Wall clock time and date at job start Mon Mar 30 2020 02:22:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30519 * 1
3 3 Si 1.86793 * 120.00053 * 2 1
4 4 H 1.48497 * 109.47260 * 274.98745 * 3 2 1
5 5 H 1.48500 * 109.47589 * 34.98589 * 3 2 1
6 6 H 1.48500 * 109.47378 * 154.98857 * 3 2 1
7 7 C 1.40460 * 119.99649 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99818 * 186.25619 * 7 2 1
9 9 C 1.41026 * 120.00234 * 6.25372 * 7 2 1
10 10 O 1.21430 * 119.99722 * 353.74289 * 9 7 2
11 11 C 1.50700 * 119.99927 * 173.74044 * 9 7 2
12 12 C 1.53000 * 109.46949 * 180.02562 * 11 9 7
13 13 C 1.53003 * 109.47041 * 179.97438 * 12 11 9
14 14 H 1.09004 * 110.79753 * 51.37692 * 13 12 11
15 15 C 1.54813 * 110.90636 * 175.00057 * 13 12 11
16 16 C 1.54096 * 104.18435 * 139.11879 * 15 13 12
17 17 O 1.43741 * 107.29767 * 2.02515 * 16 15 13
18 18 C 1.44374 * 106.97565 * 333.49074 * 17 16 15
19 19 H 0.97001 * 119.99878 * 0.02562 * 1 2 3
20 20 H 1.08994 * 109.46907 * 60.00369 * 11 9 7
21 21 H 1.08998 * 109.47150 * 299.99797 * 11 9 7
22 22 H 1.09004 * 109.47043 * 60.00519 * 12 11 9
23 23 H 1.08993 * 109.47244 * 300.00239 * 12 11 9
24 24 H 1.08997 * 110.48988 * 20.43771 * 15 13 12
25 25 H 1.08995 * 110.59997 * 257.84577 * 15 13 12
26 26 H 1.09005 * 109.87700 * 242.60361 * 16 15 13
27 27 H 1.08996 * 109.88073 * 121.45948 * 16 15 13
28 28 H 1.09001 * 110.61969 * 158.55765 * 18 17 16
29 29 H 1.08997 * 110.62048 * 281.55631 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3052 0.0000 0.0000
3 14 2.2392 1.6177 0.0000
4 1 2.3813 2.1072 -1.3947
5 1 1.4934 2.6200 0.8027
6 1 3.5855 1.4120 0.5919
7 6 2.0074 -1.2165 -0.0005
8 1 3.0826 -1.2193 0.1014
9 6 1.3086 -2.4341 -0.1341
10 8 0.0943 -2.4402 -0.1344
11 6 2.0688 -3.7275 -0.2766
12 6 1.0805 -4.8884 -0.4045
13 6 1.8523 -6.2015 -0.5497
14 1 2.5970 -6.3022 0.2399
15 6 0.8870 -7.4119 -0.5563
16 6 1.4566 -8.3433 -1.6438
17 8 2.6523 -7.7272 -2.1507
18 6 2.5118 -6.3046 -1.9486
19 1 -0.4850 0.8401 -0.0004
20 1 2.6959 -3.8789 0.6019
21 1 2.6953 -3.6844 -1.1674
22 1 0.4536 -4.7368 -1.2832
23 1 0.4535 -4.9316 0.4860
24 1 -0.1223 -7.0935 -0.8170
25 1 0.8904 -7.9104 0.4130
26 1 0.7307 -8.4610 -2.4483
27 1 1.6949 -9.3152 -1.2117
28 1 3.4874 -5.8185 -1.9497
29 1 1.8647 -5.8707 -2.7109
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000238635263.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:22:32
Heat of formation + Delta-G solvation = -110.840089 kcal
Electronic energy + Delta-G solvation = -12441.397526 eV
Core-core repulsion = 10135.689987 eV
Total energy + Delta-G solvation = -2305.707539 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.15 seconds
Orbital eigenvalues (eV)
-39.26005 -36.87129 -33.81132 -32.54198 -30.37883 -28.36661 -26.66701 -23.61908
-22.07501 -20.11467 -19.00876 -16.40542 -16.17337 -15.48813 -15.11583 -14.97297
-13.99503 -13.43437 -13.14500 -13.01472 -12.50818 -11.77956 -11.52892 -11.33225
-11.32744 -11.03512 -10.65836 -10.43015 -10.35674 -10.06027 -10.03208 -9.83128
-9.51587 -8.89154 -7.33459 -6.20544 -4.85656 3.05835 3.14997 3.18750
4.04862 4.11282 4.28131 4.77840 4.97650 5.09533 5.28813 5.47996
5.49445 5.76543 5.84106 5.88423 5.99692 6.03009 6.12752 6.33104
6.48936 6.57204 6.88705 7.00129 7.03684 7.09089 7.29427 8.12841
8.86922 8.94961 10.38311 10.62437
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.082129 B = 0.006901 C = 0.006560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 340.843729 B = 4056.426037 C = 4267.102235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.743 5.743
2 C 0.083 3.917
3 Si 0.903 3.097
4 H -0.270 1.270
5 H -0.277 1.277
6 H -0.262 1.262
7 C -0.540 4.540
8 H 0.068 0.932
9 C 0.362 3.638
10 O -0.547 6.547
11 C -0.159 4.159
12 C -0.089 4.089
13 C -0.121 4.121
14 H 0.080 0.920
15 C -0.154 4.154
16 C 0.048 3.952
17 O -0.387 6.387
18 C 0.050 3.950
19 H 0.272 0.728
20 H 0.061 0.939
21 H 0.061 0.939
22 H 0.062 0.938
23 H 0.064 0.936
24 H 0.077 0.923
25 H 0.073 0.927
26 H 0.054 0.946
27 H 0.078 0.922
28 H 0.092 0.908
29 H 0.062 0.938
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.589 -9.123 -1.545 9.925
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.371 5.371
2 C -0.140 4.140
3 Si 0.728 3.272
4 H -0.196 1.196
5 H -0.203 1.203
6 H -0.186 1.186
7 C -0.572 4.572
8 H 0.086 0.914
9 C 0.256 3.744
10 O -0.437 6.437
11 C -0.198 4.198
12 C -0.127 4.127
13 C -0.140 4.140
14 H 0.099 0.901
15 C -0.192 4.192
16 C -0.029 4.029
17 O -0.306 6.306
18 C -0.026 4.026
19 H 0.083 0.917
20 H 0.080 0.920
21 H 0.080 0.920
22 H 0.081 0.919
23 H 0.083 0.917
24 H 0.096 0.904
25 H 0.092 0.908
26 H 0.072 0.928
27 H 0.096 0.904
28 H 0.111 0.889
29 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges 3.007 -9.198 -1.641 9.815
hybrid contribution 0.453 0.922 0.114 1.034
sum 3.461 -8.276 -1.527 9.099
Atomic orbital electron populations
1.69964 1.07518 1.27786 1.31877 1.26018 0.94545 1.00909 0.92489
0.86420 0.80576 0.81299 0.78940 1.19556 1.20265 1.18609 1.20847
0.95314 0.92337 1.48694 0.91386 1.19529 0.88970 0.87743 0.78136
1.90385 1.15654 1.88386 1.49237 1.22060 0.99159 0.97674 1.00865
1.21257 0.97634 0.91173 1.02639 1.22849 0.97708 0.95697 0.97718
0.90120 1.23014 1.00398 0.96346 0.99435 1.23117 0.87387 0.96791
0.95639 1.88811 1.38996 1.19721 1.83054 1.23704 1.01501 0.81425
0.95962 0.91743 0.92033 0.92005 0.91888 0.91735 0.90439 0.90838
0.92772 0.90414 0.88940 0.91953
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.74 -21.74 11.75 55.57 0.65 -21.09 15
2 C 0.08 2.28 5.50 -17.27 -0.09 2.19 15
3 Si 0.90 19.66 29.57 -169.99 -5.03 14.63 15
4 H -0.27 -5.75 7.11 56.52 0.40 -5.35 15
5 H -0.28 -5.88 7.11 56.52 0.40 -5.48 15
6 H -0.26 -5.54 7.11 56.52 0.40 -5.14 15
7 C -0.54 -15.14 9.22 -37.69 -0.35 -15.49 15
8 H 0.07 1.76 7.86 -52.48 -0.41 1.35 15
9 C 0.36 10.12 6.90 -33.25 -0.23 9.89 15
10 O -0.55 -17.25 14.53 5.43 0.08 -17.17 15
11 C -0.16 -3.44 5.47 -27.88 -0.15 -3.59 15
12 C -0.09 -1.72 3.90 -26.73 -0.10 -1.82 15
13 C -0.12 -1.86 3.09 -88.61 -0.27 -2.13 15
14 H 0.08 1.21 8.14 -51.93 -0.42 0.78 15
15 C -0.15 -2.03 6.60 -25.20 -0.17 -2.20 15
16 C 0.05 0.60 7.70 37.73 0.29 0.89 15
17 O -0.39 -5.93 11.52 -35.23 -0.41 -6.34 15
18 C 0.05 0.76 6.63 38.21 0.25 1.01 15
19 H 0.27 7.14 8.29 -40.82 -0.34 6.80 15
20 H 0.06 1.24 8.14 -51.93 -0.42 0.82 15
21 H 0.06 1.24 7.73 -51.93 -0.40 0.84 15
22 H 0.06 1.28 7.94 -51.93 -0.41 0.87 15
23 H 0.06 1.31 8.10 -51.93 -0.42 0.89 15
24 H 0.08 1.02 7.86 -51.93 -0.41 0.62 15
25 H 0.07 0.86 8.14 -51.93 -0.42 0.44 15
26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 15
27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 15
28 H 0.09 1.31 8.14 -51.93 -0.42 0.89 15
29 H 0.06 0.94 7.93 -51.93 -0.41 0.53 15
LS Contribution 248.24 15.07 3.74 3.74
Total: -1.00 -32.09 248.24 -5.92 -38.01
By element:
Atomic # 1 Polarization: 3.62 SS G_CDS: -4.14 Total: -0.51 kcal
Atomic # 6 Polarization: -10.44 SS G_CDS: -0.83 Total: -11.26 kcal
Atomic # 7 Polarization: -21.74 SS G_CDS: 0.65 Total: -21.09 kcal
Atomic # 8 Polarization: -23.18 SS G_CDS: -0.33 Total: -23.51 kcal
Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.63 kcal
Total LS contribution 3.74 Total: 3.74 kcal
Total: -32.09 -5.92 -38.01 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238635263.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -72.832 kcal
(2) G-P(sol) polarization free energy of solvation -32.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.919 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.921 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.008 kcal
(6) G-S(sol) free energy of system = (1) + (5) -110.840 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.15 seconds