Wall clock time and date at job start Mon Mar 30 2020 02:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30519 * 1 3 3 Si 1.86793 * 120.00053 * 2 1 4 4 H 1.48497 * 109.47260 * 274.98745 * 3 2 1 5 5 H 1.48500 * 109.47589 * 34.98589 * 3 2 1 6 6 H 1.48500 * 109.47378 * 154.98857 * 3 2 1 7 7 C 1.40460 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99818 * 186.25619 * 7 2 1 9 9 C 1.41026 * 120.00234 * 6.25372 * 7 2 1 10 10 O 1.21430 * 119.99722 * 353.74289 * 9 7 2 11 11 C 1.50700 * 119.99927 * 173.74044 * 9 7 2 12 12 C 1.53000 * 109.46949 * 180.02562 * 11 9 7 13 13 C 1.53003 * 109.47041 * 179.97438 * 12 11 9 14 14 H 1.09004 * 110.79753 * 51.37692 * 13 12 11 15 15 C 1.54813 * 110.90636 * 175.00057 * 13 12 11 16 16 C 1.54096 * 104.18435 * 139.11879 * 15 13 12 17 17 O 1.43741 * 107.29767 * 2.02515 * 16 15 13 18 18 C 1.44374 * 106.97565 * 333.49074 * 17 16 15 19 19 H 0.97001 * 119.99878 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.46907 * 60.00369 * 11 9 7 21 21 H 1.08998 * 109.47150 * 299.99797 * 11 9 7 22 22 H 1.09004 * 109.47043 * 60.00519 * 12 11 9 23 23 H 1.08993 * 109.47244 * 300.00239 * 12 11 9 24 24 H 1.08997 * 110.48988 * 20.43771 * 15 13 12 25 25 H 1.08995 * 110.59997 * 257.84577 * 15 13 12 26 26 H 1.09005 * 109.87700 * 242.60361 * 16 15 13 27 27 H 1.08996 * 109.88073 * 121.45948 * 16 15 13 28 28 H 1.09001 * 110.61969 * 158.55765 * 18 17 16 29 29 H 1.08997 * 110.62048 * 281.55631 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3052 0.0000 0.0000 3 14 2.2392 1.6177 0.0000 4 1 2.3813 2.1072 -1.3947 5 1 1.4934 2.6200 0.8027 6 1 3.5855 1.4120 0.5919 7 6 2.0074 -1.2165 -0.0005 8 1 3.0826 -1.2193 0.1014 9 6 1.3086 -2.4341 -0.1341 10 8 0.0943 -2.4402 -0.1344 11 6 2.0688 -3.7275 -0.2766 12 6 1.0805 -4.8884 -0.4045 13 6 1.8523 -6.2015 -0.5497 14 1 2.5970 -6.3022 0.2399 15 6 0.8870 -7.4119 -0.5563 16 6 1.4566 -8.3433 -1.6438 17 8 2.6523 -7.7272 -2.1507 18 6 2.5118 -6.3046 -1.9486 19 1 -0.4850 0.8401 -0.0004 20 1 2.6959 -3.8789 0.6019 21 1 2.6953 -3.6844 -1.1674 22 1 0.4536 -4.7368 -1.2832 23 1 0.4535 -4.9316 0.4860 24 1 -0.1223 -7.0935 -0.8170 25 1 0.8904 -7.9104 0.4130 26 1 0.7307 -8.4610 -2.4483 27 1 1.6949 -9.3152 -1.2117 28 1 3.4874 -5.8185 -1.9497 29 1 1.8647 -5.8707 -2.7109 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238635263.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:32 Heat of formation + Delta-G solvation = -132.250541 kcal Electronic energy + Delta-G solvation = -12442.325953 eV Core-core repulsion = 10135.689987 eV Total energy + Delta-G solvation = -2306.635966 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.45034 -38.93044 -35.36101 -34.59623 -31.74071 -29.91998 -28.50391 -25.18349 -23.28977 -21.48619 -20.86922 -18.37116 -17.48398 -17.12987 -16.54106 -16.30823 -15.47704 -15.20304 -14.98425 -14.47691 -13.83045 -13.55601 -13.24343 -12.96013 -12.71828 -12.45202 -12.37234 -12.08481 -11.96547 -11.66787 -11.55781 -11.33951 -10.96882 -10.63604 -9.49511 -8.28351 -7.07449 1.34607 1.37583 1.54370 2.20138 2.22673 3.00323 3.39501 3.62413 3.82310 3.95744 4.20069 4.34021 4.39386 4.55089 4.58134 4.79743 4.83546 4.88679 4.91259 5.05325 5.10606 5.19652 5.23121 5.37877 5.47275 5.90476 5.99571 6.74205 6.84813 8.29743 8.53491 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.082129 B = 0.006901 C = 0.006560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 340.843729 B = 4056.426037 C = 4267.102235 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.793 5.793 2 C 0.025 3.975 3 Si 0.993 3.007 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.248 1.248 7 C -0.571 4.571 8 H 0.085 0.915 9 C 0.333 3.667 10 O -0.596 6.596 11 C -0.149 4.149 12 C -0.078 4.078 13 C -0.115 4.115 14 H 0.091 0.909 15 C -0.152 4.152 16 C 0.045 3.955 17 O -0.400 6.400 18 C 0.051 3.949 19 H 0.280 0.720 20 H 0.078 0.922 21 H 0.079 0.921 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.072 0.928 25 H 0.091 0.909 26 H 0.063 0.937 27 H 0.101 0.899 28 H 0.101 0.899 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.272 -9.239 -1.514 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.193 4.193 3 Si 0.812 3.188 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.171 1.171 7 C -0.602 4.602 8 H 0.103 0.897 9 C 0.232 3.768 10 O -0.490 6.490 11 C -0.187 4.187 12 C -0.116 4.116 13 C -0.134 4.134 14 H 0.109 0.891 15 C -0.190 4.190 16 C -0.032 4.032 17 O -0.319 6.319 18 C -0.026 4.026 19 H 0.090 0.910 20 H 0.097 0.903 21 H 0.098 0.902 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.090 0.910 25 H 0.110 0.890 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.119 0.881 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.709 -9.339 -1.611 10.583 hybrid contribution -0.106 0.934 0.112 0.946 sum 4.603 -8.406 -1.498 9.700 Atomic orbital electron populations 1.70097 1.09897 1.29632 1.32578 1.27264 0.95441 1.05585 0.91045 0.85080 0.79179 0.75078 0.79493 1.18496 1.19343 1.17102 1.21418 0.96406 0.93393 1.48980 0.89671 1.20411 0.88828 0.90486 0.77104 1.90345 1.17681 1.89588 1.51361 1.21887 0.99160 0.95274 1.02354 1.21086 0.97030 0.92632 1.00819 1.22733 0.97973 0.94228 0.98447 0.89095 1.23017 0.99557 0.95609 1.00798 1.23300 0.86808 0.97344 0.95730 1.88799 1.40207 1.19566 1.83375 1.23681 1.01792 0.81750 0.95350 0.90954 0.90335 0.90245 0.93876 0.93579 0.90956 0.89034 0.91897 0.88052 0.88075 0.92619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -47.40 11.75 21.91 0.26 -47.14 15 2 C 0.03 1.39 5.50 85.43 0.47 1.85 15 3 Si 0.99 39.80 29.57 68.60 2.03 41.83 15 4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15 6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 15 7 C -0.57 -32.12 9.22 23.50 0.22 -31.90 15 8 H 0.09 4.33 7.86 -2.91 -0.02 4.31 15 9 C 0.33 19.05 6.90 26.37 0.18 19.23 15 10 O -0.60 -39.07 14.53 -3.50 -0.05 -39.13 15 11 C -0.15 -6.38 5.47 29.85 0.16 -6.22 15 12 C -0.08 -3.01 3.90 30.60 0.12 -2.89 15 13 C -0.12 -3.37 3.09 -9.49 -0.03 -3.40 15 14 H 0.09 2.50 8.14 -2.38 -0.02 2.48 15 15 C -0.15 -3.73 6.60 31.58 0.21 -3.53 15 16 C 0.04 1.01 7.70 72.35 0.56 1.57 15 17 O -0.40 -11.41 11.52 -148.98 -1.72 -13.13 15 18 C 0.05 1.44 6.63 72.66 0.48 1.92 15 19 H 0.28 14.97 8.29 -92.71 -0.77 14.20 15 20 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15 21 H 0.08 3.10 7.73 -2.39 -0.02 3.08 15 22 H 0.04 1.80 7.94 -2.39 -0.02 1.78 15 23 H 0.05 1.92 8.10 -2.39 -0.02 1.90 15 24 H 0.07 1.85 7.86 -2.39 -0.02 1.83 15 25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15 26 H 0.06 1.33 8.14 -2.38 -0.02 1.31 15 27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 15 28 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15 29 H 0.06 1.65 7.93 -2.39 -0.02 1.63 15 Total: -1.00 -70.40 248.24 4.01 -66.39 By element: Atomic # 1 Polarization: 13.41 SS G_CDS: 1.12 Total: 14.53 kcal Atomic # 6 Polarization: -25.72 SS G_CDS: 2.37 Total: -23.36 kcal Atomic # 7 Polarization: -47.40 SS G_CDS: 0.26 Total: -47.14 kcal Atomic # 8 Polarization: -50.49 SS G_CDS: -1.77 Total: -52.25 kcal Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal Total: -70.40 4.01 -66.39 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238635263.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.857 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds