Wall clock time and date at job start Mon Mar 30 2020 02:22:32
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.30519 * 1
3 3 Si 1.86793 * 120.00053 * 2 1
4 4 H 1.48497 * 109.47260 * 274.98745 * 3 2 1
5 5 H 1.48500 * 109.47589 * 34.98589 * 3 2 1
6 6 H 1.48500 * 109.47378 * 154.98857 * 3 2 1
7 7 C 1.40460 * 119.99649 * 180.02562 * 2 1 3
8 8 H 1.08005 * 119.99818 * 186.25619 * 7 2 1
9 9 C 1.41026 * 120.00234 * 6.25372 * 7 2 1
10 10 O 1.21430 * 119.99722 * 353.74289 * 9 7 2
11 11 C 1.50700 * 119.99927 * 173.74044 * 9 7 2
12 12 C 1.53000 * 109.46949 * 180.02562 * 11 9 7
13 13 C 1.53003 * 109.47041 * 179.97438 * 12 11 9
14 14 H 1.09004 * 110.79753 * 51.37692 * 13 12 11
15 15 C 1.54813 * 110.90636 * 175.00057 * 13 12 11
16 16 C 1.54096 * 104.18435 * 139.11879 * 15 13 12
17 17 O 1.43741 * 107.29767 * 2.02515 * 16 15 13
18 18 C 1.44374 * 106.97565 * 333.49074 * 17 16 15
19 19 H 0.97001 * 119.99878 * 0.02562 * 1 2 3
20 20 H 1.08994 * 109.46907 * 60.00369 * 11 9 7
21 21 H 1.08998 * 109.47150 * 299.99797 * 11 9 7
22 22 H 1.09004 * 109.47043 * 60.00519 * 12 11 9
23 23 H 1.08993 * 109.47244 * 300.00239 * 12 11 9
24 24 H 1.08997 * 110.48988 * 20.43771 * 15 13 12
25 25 H 1.08995 * 110.59997 * 257.84577 * 15 13 12
26 26 H 1.09005 * 109.87700 * 242.60361 * 16 15 13
27 27 H 1.08996 * 109.88073 * 121.45948 * 16 15 13
28 28 H 1.09001 * 110.61969 * 158.55765 * 18 17 16
29 29 H 1.08997 * 110.62048 * 281.55631 * 18 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3052 0.0000 0.0000
3 14 2.2392 1.6177 0.0000
4 1 2.3813 2.1072 -1.3947
5 1 1.4934 2.6200 0.8027
6 1 3.5855 1.4120 0.5919
7 6 2.0074 -1.2165 -0.0005
8 1 3.0826 -1.2193 0.1014
9 6 1.3086 -2.4341 -0.1341
10 8 0.0943 -2.4402 -0.1344
11 6 2.0688 -3.7275 -0.2766
12 6 1.0805 -4.8884 -0.4045
13 6 1.8523 -6.2015 -0.5497
14 1 2.5970 -6.3022 0.2399
15 6 0.8870 -7.4119 -0.5563
16 6 1.4566 -8.3433 -1.6438
17 8 2.6523 -7.7272 -2.1507
18 6 2.5118 -6.3046 -1.9486
19 1 -0.4850 0.8401 -0.0004
20 1 2.6959 -3.8789 0.6019
21 1 2.6953 -3.6844 -1.1674
22 1 0.4536 -4.7368 -1.2832
23 1 0.4535 -4.9316 0.4860
24 1 -0.1223 -7.0935 -0.8170
25 1 0.8904 -7.9104 0.4130
26 1 0.7307 -8.4610 -2.4483
27 1 1.6949 -9.3152 -1.2117
28 1 3.4874 -5.8185 -1.9497
29 1 1.8647 -5.8707 -2.7109
RHF calculation, no. of doubly occupied orbitals= 37
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000238635263.mol2 29
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:22:32
Heat of formation + Delta-G solvation = -132.250541 kcal
Electronic energy + Delta-G solvation = -12442.325953 eV
Core-core repulsion = 10135.689987 eV
Total energy + Delta-G solvation = -2306.635966 eV
No. of doubly occupied orbitals = 37
Molecular weight
(most abundant/longest-lived isotopes) = 198.104 amu
Computer time = 0.17 seconds
Orbital eigenvalues (eV)
-40.45034 -38.93044 -35.36101 -34.59623 -31.74071 -29.91998 -28.50391 -25.18349
-23.28977 -21.48619 -20.86922 -18.37116 -17.48398 -17.12987 -16.54106 -16.30823
-15.47704 -15.20304 -14.98425 -14.47691 -13.83045 -13.55601 -13.24343 -12.96013
-12.71828 -12.45202 -12.37234 -12.08481 -11.96547 -11.66787 -11.55781 -11.33951
-10.96882 -10.63604 -9.49511 -8.28351 -7.07449 1.34607 1.37583 1.54370
2.20138 2.22673 3.00323 3.39501 3.62413 3.82310 3.95744 4.20069
4.34021 4.39386 4.55089 4.58134 4.79743 4.83546 4.88679 4.91259
5.05325 5.10606 5.19652 5.23121 5.37877 5.47275 5.90476 5.99571
6.74205 6.84813 8.29743 8.53491
Molecular weight = 198.10amu
Principal moments of inertia in cm(-1)
A = 0.082129 B = 0.006901 C = 0.006560
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 340.843729 B = 4056.426037 C = 4267.102235
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.793 5.793
2 C 0.025 3.975
3 Si 0.993 3.007
4 H -0.260 1.260
5 H -0.269 1.269
6 H -0.248 1.248
7 C -0.571 4.571
8 H 0.085 0.915
9 C 0.333 3.667
10 O -0.596 6.596
11 C -0.149 4.149
12 C -0.078 4.078
13 C -0.115 4.115
14 H 0.091 0.909
15 C -0.152 4.152
16 C 0.045 3.955
17 O -0.400 6.400
18 C 0.051 3.949
19 H 0.280 0.720
20 H 0.078 0.922
21 H 0.079 0.921
22 H 0.042 0.958
23 H 0.045 0.955
24 H 0.072 0.928
25 H 0.091 0.909
26 H 0.063 0.937
27 H 0.101 0.899
28 H 0.101 0.899
29 H 0.056 0.944
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.272 -9.239 -1.514 10.745
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.422 5.422
2 C -0.193 4.193
3 Si 0.812 3.188
4 H -0.185 1.185
5 H -0.193 1.193
6 H -0.171 1.171
7 C -0.602 4.602
8 H 0.103 0.897
9 C 0.232 3.768
10 O -0.490 6.490
11 C -0.187 4.187
12 C -0.116 4.116
13 C -0.134 4.134
14 H 0.109 0.891
15 C -0.190 4.190
16 C -0.032 4.032
17 O -0.319 6.319
18 C -0.026 4.026
19 H 0.090 0.910
20 H 0.097 0.903
21 H 0.098 0.902
22 H 0.061 0.939
23 H 0.064 0.936
24 H 0.090 0.910
25 H 0.110 0.890
26 H 0.081 0.919
27 H 0.119 0.881
28 H 0.119 0.881
29 H 0.074 0.926
Dipole moment (debyes) X Y Z Total
from point charges 4.709 -9.339 -1.611 10.583
hybrid contribution -0.106 0.934 0.112 0.946
sum 4.603 -8.406 -1.498 9.700
Atomic orbital electron populations
1.70097 1.09897 1.29632 1.32578 1.27264 0.95441 1.05585 0.91045
0.85080 0.79179 0.75078 0.79493 1.18496 1.19343 1.17102 1.21418
0.96406 0.93393 1.48980 0.89671 1.20411 0.88828 0.90486 0.77104
1.90345 1.17681 1.89588 1.51361 1.21887 0.99160 0.95274 1.02354
1.21086 0.97030 0.92632 1.00819 1.22733 0.97973 0.94228 0.98447
0.89095 1.23017 0.99557 0.95609 1.00798 1.23300 0.86808 0.97344
0.95730 1.88799 1.40207 1.19566 1.83375 1.23681 1.01792 0.81750
0.95350 0.90954 0.90335 0.90245 0.93876 0.93579 0.90956 0.89034
0.91897 0.88052 0.88075 0.92619
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.79 -47.40 11.75 21.91 0.26 -47.14 15
2 C 0.03 1.39 5.50 85.43 0.47 1.85 15
3 Si 0.99 39.80 29.57 68.60 2.03 41.83 15
4 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15
5 H -0.27 -10.31 7.11 99.48 0.71 -9.60 15
6 H -0.25 -9.28 7.11 99.48 0.71 -8.57 15
7 C -0.57 -32.12 9.22 23.50 0.22 -31.90 15
8 H 0.09 4.33 7.86 -2.91 -0.02 4.31 15
9 C 0.33 19.05 6.90 26.37 0.18 19.23 15
10 O -0.60 -39.07 14.53 -3.50 -0.05 -39.13 15
11 C -0.15 -6.38 5.47 29.85 0.16 -6.22 15
12 C -0.08 -3.01 3.90 30.60 0.12 -2.89 15
13 C -0.12 -3.37 3.09 -9.49 -0.03 -3.40 15
14 H 0.09 2.50 8.14 -2.38 -0.02 2.48 15
15 C -0.15 -3.73 6.60 31.58 0.21 -3.53 15
16 C 0.04 1.01 7.70 72.35 0.56 1.57 15
17 O -0.40 -11.41 11.52 -148.98 -1.72 -13.13 15
18 C 0.05 1.44 6.63 72.66 0.48 1.92 15
19 H 0.28 14.97 8.29 -92.71 -0.77 14.20 15
20 H 0.08 3.08 8.14 -2.39 -0.02 3.06 15
21 H 0.08 3.10 7.73 -2.39 -0.02 3.08 15
22 H 0.04 1.80 7.94 -2.39 -0.02 1.78 15
23 H 0.05 1.92 8.10 -2.39 -0.02 1.90 15
24 H 0.07 1.85 7.86 -2.39 -0.02 1.83 15
25 H 0.09 1.92 8.14 -2.39 -0.02 1.90 15
26 H 0.06 1.33 8.14 -2.38 -0.02 1.31 15
27 H 0.10 1.84 8.14 -2.39 -0.02 1.82 15
28 H 0.10 2.67 8.14 -2.39 -0.02 2.65 15
29 H 0.06 1.65 7.93 -2.39 -0.02 1.63 15
Total: -1.00 -70.40 248.24 4.01 -66.39
By element:
Atomic # 1 Polarization: 13.41 SS G_CDS: 1.12 Total: 14.53 kcal
Atomic # 6 Polarization: -25.72 SS G_CDS: 2.37 Total: -23.36 kcal
Atomic # 7 Polarization: -47.40 SS G_CDS: 0.26 Total: -47.14 kcal
Atomic # 8 Polarization: -50.49 SS G_CDS: -1.77 Total: -52.25 kcal
Atomic # 14 Polarization: 39.80 SS G_CDS: 2.03 Total: 41.83 kcal
Total: -70.40 4.01 -66.39 kcal
The number of atoms in the molecule is 29
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000238635263.mol2 29
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -65.857 kcal
(2) G-P(sol) polarization free energy of solvation -70.398 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.256 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.005 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.393 kcal
(6) G-S(sol) free energy of system = (1) + (5) -132.251 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.17 seconds