Wall clock time and date at job start Mon Mar 30 2020 02:20:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86798 * 119.99784 * 2 1 4 4 H 1.48506 * 109.47297 * 269.99763 * 3 2 1 5 5 H 1.48503 * 109.47261 * 149.99944 * 3 2 1 6 6 H 1.48500 * 109.47454 * 29.99937 * 3 2 1 7 7 C 1.37881 * 120.00186 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99307 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99889 * 180.02562 * 7 2 1 10 10 C 1.52998 * 109.46700 * 180.02562 * 9 7 2 11 11 H 1.08999 * 109.48443 * 55.00242 * 10 9 7 12 12 C 1.52964 * 109.48180 * 175.02644 * 10 9 7 13 13 C 1.52958 * 109.81819 * 183.57541 * 12 10 9 14 14 C 1.53225 * 109.40510 * 296.40093 * 13 12 10 15 15 C 1.51269 * 108.53648 * 54.62588 * 14 13 12 16 16 O 1.20770 * 120.84898 * 128.63629 * 15 14 13 17 17 C 1.51268 * 118.31467 * 308.66439 * 15 14 13 18 18 H 1.09006 * 109.61406 * 291.61750 * 17 15 14 19 19 O 1.42898 * 109.64283 * 171.04481 * 17 15 14 20 20 H 0.96998 * 120.00124 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.47017 * 299.99842 * 9 7 2 22 22 H 1.08997 * 109.47037 * 59.99777 * 9 7 2 23 23 H 1.09007 * 109.41307 * 303.68375 * 12 10 9 24 24 H 1.08998 * 109.41345 * 63.54061 * 12 10 9 25 25 H 1.09002 * 109.47782 * 56.38254 * 13 12 10 26 26 H 1.09000 * 109.48228 * 176.41907 * 13 12 10 27 27 H 1.09000 * 109.62894 * 174.34265 * 14 13 12 28 28 H 1.08999 * 109.62515 * 294.72122 * 14 13 12 29 29 H 0.96703 * 114.00100 * 60.94607 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 3.5467 1.4403 0.7001 6 1 1.4466 2.6527 0.7000 7 6 2.0046 -1.1941 0.0005 8 1 1.4646 -2.1293 0.0014 9 6 3.5116 -1.1940 0.0011 10 6 4.0216 -2.6365 0.0010 11 1 3.5874 -3.1755 -0.8411 12 6 5.5462 -2.6386 -0.1234 13 6 6.0571 -4.0774 -0.2138 14 6 5.7289 -4.8169 1.0874 15 6 4.2433 -4.6981 1.3465 16 8 3.5745 -5.6771 1.5760 17 6 3.6165 -3.3219 1.3102 18 1 3.9734 -2.7348 2.1565 19 8 2.1937 -3.4404 1.3696 20 1 -0.4850 0.8400 -0.0004 21 1 3.8753 -0.6803 -0.8889 22 1 3.8746 -0.6799 0.8911 23 1 5.8371 -2.0936 -1.0216 24 1 5.9817 -2.1548 0.7508 25 1 5.5747 -4.5825 -1.0507 26 1 7.1364 -4.0711 -0.3661 27 1 6.0006 -5.8680 0.9898 28 1 6.2841 -4.3704 1.9123 29 1 1.8677 -3.8664 2.1743 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000238699475.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:20 Heat of formation + Delta-G solvation = -127.167652 kcal Electronic energy + Delta-G solvation = -13042.943142 eV Core-core repulsion = 10736.527586 eV Total energy + Delta-G solvation = -2306.415555 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.19537 -38.19796 -36.53297 -34.89604 -32.83458 -29.15843 -29.06754 -24.78125 -22.87660 -21.67149 -20.24201 -18.85086 -18.17270 -16.90954 -16.68280 -16.05929 -15.83547 -15.40308 -14.65797 -14.31613 -14.10554 -13.59099 -13.42109 -13.29591 -12.88785 -12.55911 -12.30759 -11.79084 -11.69937 -11.55573 -11.38902 -11.16442 -11.01514 -10.64004 -9.95385 -8.11007 -6.11162 0.88095 1.39366 1.41309 1.51955 2.45630 3.04252 3.20595 3.43441 3.84864 3.95739 4.10819 4.18629 4.36806 4.45945 4.62170 4.82697 4.91463 4.99095 5.10396 5.21835 5.28711 5.33813 5.45419 5.64906 5.80143 6.40498 6.55398 6.91298 7.12876 7.49288 9.06017 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.048080 B = 0.011381 C = 0.009651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.227282 B = 2459.719021 C = 2900.419878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.963 5.963 2 C -0.010 4.010 3 Si 0.944 3.056 4 H -0.271 1.271 5 H -0.240 1.240 6 H -0.294 1.294 7 C -0.502 4.502 8 H 0.054 0.946 9 C -0.007 4.007 10 C -0.062 4.062 11 H 0.046 0.954 12 C -0.116 4.116 13 C -0.108 4.108 14 C -0.159 4.159 15 C 0.333 3.667 16 O -0.497 6.497 17 C 0.064 3.936 18 H 0.097 0.903 19 O -0.546 6.546 20 H 0.258 0.742 21 H 0.023 0.977 22 H 0.025 0.975 23 H 0.083 0.917 24 H 0.088 0.912 25 H 0.055 0.945 26 H 0.111 0.889 27 H 0.095 0.905 28 H 0.130 0.870 29 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.829 -5.054 2.575 17.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.204 4.204 3 Si 0.769 3.231 4 H -0.197 1.197 5 H -0.163 1.163 6 H -0.220 1.220 7 C -0.540 4.540 8 H 0.072 0.928 9 C -0.044 4.044 10 C -0.081 4.081 11 H 0.064 0.936 12 C -0.153 4.153 13 C -0.145 4.145 14 C -0.197 4.197 15 C 0.211 3.789 16 O -0.373 6.373 17 C 0.004 3.996 18 H 0.114 0.886 19 O -0.350 6.350 20 H 0.067 0.933 21 H 0.041 0.959 22 H 0.044 0.956 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.074 0.926 26 H 0.130 0.870 27 H 0.114 0.886 28 H 0.148 0.852 29 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 16.402 -5.168 2.109 17.325 hybrid contribution -0.808 0.509 0.500 1.078 sum 15.594 -4.659 2.609 16.483 Atomic orbital electron populations 1.70120 1.08432 1.27238 1.54856 1.26051 0.95536 1.03229 0.95602 0.85753 0.79732 0.78829 0.78828 1.19674 1.16300 1.22023 1.21786 0.92132 0.93610 1.46494 0.92750 1.19615 0.94449 0.93506 0.96856 1.21073 0.96610 0.96391 0.93995 0.93587 1.21701 0.91548 0.97736 1.04336 1.21553 1.03419 0.94219 0.95322 1.22364 0.91479 1.04112 1.01737 1.26529 0.93395 0.90390 0.68589 1.90353 1.67317 1.41870 1.37769 1.22605 0.82306 0.93872 1.00824 0.88600 1.87054 1.20054 1.82511 1.45424 0.93320 0.95859 0.95630 0.89794 0.89353 0.92606 0.87036 0.88607 0.85204 0.78544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -63.00 13.96 21.45 0.30 -62.70 15 2 C -0.01 -0.62 5.47 84.65 0.46 -0.16 15 3 Si 0.94 44.61 27.47 68.60 1.88 46.50 15 4 H -0.27 -12.36 7.11 99.48 0.71 -11.66 15 5 H -0.24 -10.11 6.54 99.48 0.65 -9.46 15 6 H -0.29 -13.93 7.11 99.48 0.71 -13.23 15 7 C -0.50 -29.22 8.58 25.60 0.22 -29.00 15 8 H 0.05 3.60 5.96 -2.91 -0.02 3.58 15 9 C -0.01 -0.31 3.52 29.85 0.10 -0.21 15 10 C -0.06 -2.25 2.01 -10.73 -0.02 -2.27 15 11 H 0.05 1.91 8.14 -2.39 -0.02 1.89 15 12 C -0.12 -2.73 5.09 30.57 0.16 -2.58 15 13 C -0.11 -1.98 5.94 30.66 0.18 -1.80 15 14 C -0.16 -3.11 6.17 30.10 0.19 -2.92 15 15 C 0.33 10.24 6.66 29.46 0.20 10.44 15 16 O -0.50 -18.84 17.20 16.82 0.29 -18.55 15 17 C 0.06 2.27 3.11 30.11 0.09 2.36 15 18 H 0.10 3.02 8.14 -2.38 -0.02 3.00 15 19 O -0.55 -24.69 9.87 -130.68 -1.29 -25.98 15 20 H 0.26 15.86 8.31 -92.71 -0.77 15.09 15 21 H 0.02 1.00 7.57 -2.39 -0.02 0.98 15 22 H 0.03 1.09 7.20 -2.39 -0.02 1.08 15 23 H 0.08 1.85 8.14 -2.38 -0.02 1.83 15 24 H 0.09 1.73 8.14 -2.39 -0.02 1.71 15 25 H 0.06 1.17 8.14 -2.39 -0.02 1.15 15 26 H 0.11 1.29 8.14 -2.39 -0.02 1.27 15 27 H 0.10 1.71 8.14 -2.39 -0.02 1.69 15 28 H 0.13 1.74 8.14 -2.39 -0.02 1.72 15 29 H 0.37 14.05 8.86 -74.06 -0.66 13.40 15 Total: -1.00 -76.01 238.82 3.19 -72.82 By element: Atomic # 1 Polarization: 13.62 SS G_CDS: 0.43 Total: 14.05 kcal Atomic # 6 Polarization: -27.71 SS G_CDS: 1.58 Total: -26.13 kcal Atomic # 7 Polarization: -63.00 SS G_CDS: 0.30 Total: -62.70 kcal Atomic # 8 Polarization: -43.54 SS G_CDS: -1.00 Total: -44.54 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.50 kcal Total: -76.01 3.19 -72.82 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000238699475.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.347 kcal (2) G-P(sol) polarization free energy of solvation -76.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds