Wall clock time and date at job start Mon Mar 30 2020 02:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.62661 * 2 1 4 4 C 1.53004 * 117.49726 * 9.68514 * 3 2 1 5 5 C 1.53000 * 117.50016 * 301.06203 * 3 2 1 6 6 O 1.43367 * 109.63446 * 239.60911 * 2 1 3 7 7 C 1.44196 * 107.28699 * 240.79062 * 6 2 1 8 8 C 1.54914 * 103.07589 * 21.43361 * 7 6 2 9 9 H 1.09000 * 110.97500 * 82.58993 * 8 7 6 10 10 C 1.50706 * 110.97437 * 206.33070 * 8 7 6 11 11 H 1.08005 * 120.00138 * 0.02562 * 10 8 7 12 12 C 1.37871 * 119.99722 * 180.02562 * 10 8 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00073 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46845 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 119.99815 * 14 12 10 17 17 H 1.48498 * 109.47295 * 240.00422 * 14 12 10 18 18 O 1.43753 * 109.63295 * 120.24406 * 2 1 3 19 19 H 1.09010 * 109.47097 * 179.69168 * 1 2 3 20 20 H 1.08999 * 109.47577 * 299.68743 * 1 2 3 21 21 H 1.09000 * 109.47582 * 59.69371 * 1 2 3 22 22 H 1.09003 * 115.55129 * 155.38695 * 3 2 1 23 23 H 1.09003 * 117.49919 * 359.97438 * 4 3 2 24 24 H 1.08999 * 117.49741 * 145.01914 * 4 3 2 25 25 H 1.08996 * 117.49749 * 214.98043 * 5 3 2 26 26 H 1.09002 * 117.49765 * 359.97263 * 5 3 2 27 27 H 1.08997 * 110.69200 * 263.03744 * 7 6 2 28 28 H 1.08996 * 110.69302 * 139.83241 * 7 6 2 29 29 H 0.97000 * 119.99651 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 1.0210 2.5559 0.2283 5 6 1.6216 2.3418 -1.1625 6 8 2.0117 -0.6831 -1.1648 7 6 2.7885 -1.8097 -0.7102 8 6 2.2652 -2.0380 0.7299 9 1 1.3461 -2.6240 0.7227 10 6 3.3150 -2.6968 1.5872 11 1 4.2796 -2.9416 1.1674 12 6 3.0442 -2.9870 2.9076 13 7 1.8695 -2.6894 3.4187 14 14 4.3452 -3.8042 3.9702 15 1 5.5707 -4.0335 3.1634 16 1 4.6686 -2.9239 5.1215 17 1 3.8308 -5.1044 4.4703 18 8 2.0130 -0.6820 1.1697 19 1 -0.3634 -1.0277 -0.0055 20 1 -0.3634 0.5090 0.8927 21 1 -0.3634 0.5186 -0.8872 22 1 3.0439 1.5837 0.4096 23 1 -0.0181 2.2626 0.3781 24 1 1.3481 3.4320 0.7883 25 1 2.3437 3.0770 -1.5176 26 1 0.9781 1.9075 -1.9276 27 1 3.8508 -1.5660 -0.6999 28 1 2.5989 -2.6844 -1.3322 29 1 1.1936 -2.2661 2.8666 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258514982.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:05 Heat of formation + Delta-G solvation = -72.996068 kcal Electronic energy + Delta-G solvation = -13233.684871 eV Core-core repulsion = 10929.618372 eV Total energy + Delta-G solvation = -2304.066499 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.70254 -36.64502 -34.10665 -32.71434 -30.01401 -27.81399 -24.46968 -23.61018 -22.19670 -21.33105 -19.14276 -17.28770 -16.31774 -15.86789 -14.92508 -14.51558 -13.80403 -13.45496 -13.26081 -12.79207 -12.20378 -11.99843 -11.61150 -11.38365 -11.23786 -10.96307 -10.80020 -10.58765 -10.16271 -10.14028 -9.86149 -9.11552 -8.92897 -8.65935 -8.35981 -6.51705 -4.31615 3.38940 3.43156 3.56562 3.92822 4.42363 4.57102 4.67851 5.18387 5.23304 5.30908 5.53343 5.55440 5.82422 5.87088 5.96824 6.02167 6.04624 6.10697 6.27184 6.33080 6.38567 6.54526 6.59564 6.78232 7.14243 7.91004 8.19819 8.33975 8.69836 9.50785 10.89513 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.055432 B = 0.010432 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.004289 B = 2683.279341 C = 2803.309339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.274 3.726 3 C -0.149 4.149 4 C -0.179 4.179 5 C -0.167 4.167 6 O -0.395 6.395 7 C 0.031 3.969 8 C 0.163 3.837 9 H 0.034 0.966 10 C -0.607 4.607 11 H 0.062 0.938 12 C 0.033 3.967 13 N -0.886 5.886 14 Si 1.079 2.921 15 H -0.287 1.287 16 H -0.284 1.284 17 H -0.284 1.284 18 O -0.367 6.367 19 H 0.059 0.941 20 H 0.072 0.928 21 H 0.060 0.940 22 H 0.108 0.892 23 H 0.100 0.900 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.064 0.936 28 H 0.079 0.921 29 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.048 5.734 -6.202 8.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.196 3.804 3 C -0.168 4.168 4 C -0.216 4.216 5 C -0.204 4.204 6 O -0.317 6.317 7 C -0.045 4.045 8 C 0.109 3.891 9 H 0.052 0.948 10 C -0.644 4.644 11 H 0.081 0.919 12 C -0.176 4.176 13 N -0.520 5.520 14 Si 0.907 3.093 15 H -0.213 1.213 16 H -0.211 1.211 17 H -0.211 1.211 18 O -0.289 6.289 19 H 0.078 0.922 20 H 0.090 0.910 21 H 0.079 0.921 22 H 0.126 0.874 23 H 0.118 0.882 24 H 0.110 0.890 25 H 0.109 0.891 26 H 0.112 0.888 27 H 0.083 0.917 28 H 0.098 0.902 29 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -0.776 5.315 -4.689 7.130 hybrid contribution -0.280 0.535 -1.575 1.687 sum -1.056 5.850 -6.263 8.635 Atomic orbital electron populations 1.22401 0.95615 1.02623 1.01774 1.22429 0.91370 0.88871 0.77732 1.22491 1.00052 0.90831 1.03400 1.23100 0.99128 0.99981 0.99404 1.22819 1.03661 1.02283 0.91685 1.88714 1.69787 1.42748 1.30430 1.24180 0.95669 0.87553 0.97098 1.21643 0.96236 0.81022 0.90228 0.94802 1.21826 1.01159 1.42634 0.98742 0.91942 1.25989 1.00153 0.95116 0.96344 1.70644 1.04644 1.36894 1.39830 0.83412 0.74266 0.76318 0.75351 1.21284 1.21061 1.21068 1.89572 1.84776 1.25040 1.29485 0.92176 0.90951 0.92085 0.87390 0.88195 0.88965 0.89075 0.88763 0.91749 0.90247 0.91094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.10 7.80 37.16 0.29 -2.81 15 2 C 0.27 5.89 1.28 -26.73 -0.03 5.86 15 3 C -0.15 -2.78 5.75 -90.62 -0.52 -3.30 15 4 C -0.18 -2.69 9.59 -26.73 -0.26 -2.94 15 5 C -0.17 -2.49 9.82 -26.73 -0.26 -2.76 15 6 O -0.40 -8.67 10.80 -59.04 -0.64 -9.31 15 7 C 0.03 0.70 7.51 38.17 0.29 0.99 15 8 C 0.16 4.29 2.74 -26.87 -0.07 4.21 15 9 H 0.03 0.93 7.89 -51.93 -0.41 0.52 15 10 C -0.61 -17.20 8.83 -34.44 -0.30 -17.51 15 11 H 0.06 1.73 7.76 -52.48 -0.41 1.32 15 12 C 0.03 0.94 5.46 -17.82 -0.10 0.84 15 13 N -0.89 -26.96 13.63 55.43 0.76 -26.20 15 14 Si 1.08 24.93 29.90 -169.99 -5.08 19.85 15 15 H -0.29 -6.26 7.11 56.52 0.40 -5.86 15 16 H -0.28 -6.50 7.11 56.52 0.40 -6.09 15 17 H -0.28 -6.36 7.11 56.52 0.40 -5.96 15 18 O -0.37 -9.66 10.12 -59.04 -0.60 -10.25 15 19 H 0.06 1.16 8.14 -51.92 -0.42 0.73 15 20 H 0.07 1.28 6.96 -51.93 -0.36 0.92 15 21 H 0.06 0.98 7.05 -51.93 -0.37 0.61 15 22 H 0.11 2.11 8.14 -51.93 -0.42 1.69 15 23 H 0.10 1.43 5.87 -51.93 -0.30 1.13 15 24 H 0.09 1.23 8.14 -51.93 -0.42 0.81 15 25 H 0.09 1.19 8.14 -51.93 -0.42 0.76 15 26 H 0.09 1.38 7.55 -51.93 -0.39 0.99 15 27 H 0.06 1.45 8.01 -51.93 -0.42 1.03 15 28 H 0.08 1.60 8.14 -51.93 -0.42 1.18 15 29 H 0.28 8.56 6.79 -40.82 -0.28 8.28 15 LS Contribution 243.13 15.07 3.66 3.66 Total: -1.00 -30.88 243.13 -6.71 -37.60 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -3.84 Total: 2.07 kcal Atomic # 6 Polarization: -16.44 SS G_CDS: -0.97 Total: -17.41 kcal Atomic # 7 Polarization: -26.96 SS G_CDS: 0.76 Total: -26.20 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -1.23 Total: -19.56 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.08 Total: 19.85 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -30.88 -6.71 -37.60 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258514982.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.399 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds