Wall clock time and date at job start Mon Mar 30 2020 02:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53002 * 109.62661 * 2 1 4 4 C 1.53004 * 117.49726 * 9.68514 * 3 2 1 5 5 C 1.53000 * 117.50016 * 301.06203 * 3 2 1 6 6 O 1.43367 * 109.63446 * 239.60911 * 2 1 3 7 7 C 1.44196 * 107.28699 * 240.79062 * 6 2 1 8 8 C 1.54914 * 103.07589 * 21.43361 * 7 6 2 9 9 H 1.09000 * 110.97500 * 82.58993 * 8 7 6 10 10 C 1.50706 * 110.97437 * 206.33070 * 8 7 6 11 11 H 1.08005 * 120.00138 * 0.02562 * 10 8 7 12 12 C 1.37871 * 119.99722 * 180.02562 * 10 8 7 13 13 N 1.31516 * 120.00217 * 0.02562 * 12 10 8 14 14 Si 1.86800 * 120.00073 * 179.97438 * 12 10 8 15 15 H 1.48503 * 109.46845 * 0.02562 * 14 12 10 16 16 H 1.48503 * 109.47399 * 119.99815 * 14 12 10 17 17 H 1.48498 * 109.47295 * 240.00422 * 14 12 10 18 18 O 1.43753 * 109.63295 * 120.24406 * 2 1 3 19 19 H 1.09010 * 109.47097 * 179.69168 * 1 2 3 20 20 H 1.08999 * 109.47577 * 299.68743 * 1 2 3 21 21 H 1.09000 * 109.47582 * 59.69371 * 1 2 3 22 22 H 1.09003 * 115.55129 * 155.38695 * 3 2 1 23 23 H 1.09003 * 117.49919 * 359.97438 * 4 3 2 24 24 H 1.08999 * 117.49741 * 145.01914 * 4 3 2 25 25 H 1.08996 * 117.49749 * 214.98043 * 5 3 2 26 26 H 1.09002 * 117.49765 * 359.97263 * 5 3 2 27 27 H 1.08997 * 110.69200 * 263.03744 * 7 6 2 28 28 H 1.08996 * 110.69302 * 139.83241 * 7 6 2 29 29 H 0.97000 * 119.99651 * 0.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0439 1.4411 0.0000 4 6 1.0210 2.5559 0.2283 5 6 1.6216 2.3418 -1.1625 6 8 2.0117 -0.6831 -1.1648 7 6 2.7885 -1.8097 -0.7102 8 6 2.2652 -2.0380 0.7299 9 1 1.3461 -2.6240 0.7227 10 6 3.3150 -2.6968 1.5872 11 1 4.2796 -2.9416 1.1674 12 6 3.0442 -2.9870 2.9076 13 7 1.8695 -2.6894 3.4187 14 14 4.3452 -3.8042 3.9702 15 1 5.5707 -4.0335 3.1634 16 1 4.6686 -2.9239 5.1215 17 1 3.8308 -5.1044 4.4703 18 8 2.0130 -0.6820 1.1697 19 1 -0.3634 -1.0277 -0.0055 20 1 -0.3634 0.5090 0.8927 21 1 -0.3634 0.5186 -0.8872 22 1 3.0439 1.5837 0.4096 23 1 -0.0181 2.2626 0.3781 24 1 1.3481 3.4320 0.7883 25 1 2.3437 3.0770 -1.5176 26 1 0.9781 1.9075 -1.9276 27 1 3.8508 -1.5660 -0.6999 28 1 2.5989 -2.6844 -1.3322 29 1 1.1936 -2.2661 2.8666 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258514982.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:05 Heat of formation + Delta-G solvation = -92.920227 kcal Electronic energy + Delta-G solvation = -13234.548848 eV Core-core repulsion = 10929.618372 eV Total energy + Delta-G solvation = -2304.930476 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.44531 -38.07912 -36.01710 -34.78419 -31.73848 -29.63652 -26.49064 -25.17005 -23.67977 -23.02367 -20.74272 -19.31048 -18.09899 -17.51687 -16.56739 -16.18974 -15.66692 -15.29513 -14.93248 -14.55374 -13.92842 -13.49715 -13.38956 -13.16493 -12.88207 -12.64098 -12.46362 -12.18918 -11.91617 -11.47226 -11.21827 -11.03274 -10.81566 -10.69070 -10.33279 -8.78864 -6.59513 1.52493 1.61741 1.78965 2.41379 2.53697 2.95068 3.06136 3.33653 3.81609 3.85207 4.01165 4.04323 4.16924 4.18500 4.38156 4.43352 4.58957 4.73656 4.77048 4.83153 4.93902 5.05499 5.16839 5.21166 5.24466 5.79077 5.98958 6.38224 6.47008 7.32505 8.61833 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.055432 B = 0.010432 C = 0.009986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 505.004289 B = 2683.279341 C = 2803.309339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.260 3.740 3 C -0.191 4.191 4 C -0.162 4.162 5 C -0.143 4.143 6 O -0.395 6.395 7 C 0.040 3.960 8 C 0.156 3.844 9 H 0.012 0.988 10 C -0.624 4.624 11 H 0.065 0.935 12 C -0.018 4.018 13 N -0.913 5.913 14 Si 1.128 2.872 15 H -0.266 1.266 16 H -0.281 1.281 17 H -0.272 1.272 18 O -0.399 6.399 19 H 0.044 0.956 20 H 0.078 0.922 21 H 0.091 0.909 22 H 0.089 0.911 23 H 0.108 0.892 24 H 0.111 0.889 25 H 0.113 0.887 26 H 0.100 0.900 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.729 6.621 -6.940 9.620 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.184 3.816 3 C -0.210 4.210 4 C -0.199 4.199 5 C -0.179 4.179 6 O -0.317 6.317 7 C -0.036 4.036 8 C 0.101 3.899 9 H 0.029 0.971 10 C -0.661 4.661 11 H 0.083 0.917 12 C -0.220 4.220 13 N -0.548 5.548 14 Si 0.948 3.052 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.197 1.197 18 O -0.321 6.321 19 H 0.063 0.937 20 H 0.097 0.903 21 H 0.110 0.890 22 H 0.107 0.893 23 H 0.126 0.874 24 H 0.129 0.871 25 H 0.132 0.868 26 H 0.119 0.881 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -0.467 6.215 -5.458 8.285 hybrid contribution -0.415 0.327 -1.419 1.514 sum -0.882 6.542 -6.877 9.533 Atomic orbital electron populations 1.22370 0.93593 1.02279 1.03566 1.22899 0.92949 0.89853 0.75944 1.22391 1.00448 0.90156 1.07956 1.23248 0.98510 0.98498 0.99623 1.22946 1.03278 1.00535 0.91185 1.88686 1.69811 1.42519 1.30659 1.24071 0.95537 0.88691 0.95278 1.21529 0.95025 0.81099 0.92207 0.97073 1.22209 1.01635 1.42879 0.99374 0.91673 1.27580 1.01215 0.95019 0.98192 1.70781 1.05475 1.38775 1.39758 0.82816 0.72455 0.75857 0.74052 1.19069 1.20649 1.19736 1.89483 1.85484 1.24944 1.32150 0.93685 0.90297 0.88993 0.89296 0.87386 0.87073 0.86834 0.88137 0.91854 0.87918 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 7.80 71.98 0.56 -5.27 15 2 C 0.26 11.13 1.28 30.59 0.04 11.17 15 3 C -0.19 -6.89 5.75 -10.79 -0.06 -6.95 15 4 C -0.16 -4.40 9.59 30.60 0.29 -4.10 15 5 C -0.14 -3.79 9.82 30.60 0.30 -3.49 15 6 O -0.39 -17.03 10.80 -126.22 -1.36 -18.40 15 7 C 0.04 1.82 7.51 72.64 0.55 2.37 15 8 C 0.16 8.41 2.74 30.50 0.08 8.49 15 9 H 0.01 0.66 7.89 -2.39 -0.02 0.64 15 10 C -0.62 -35.91 8.83 25.60 0.23 -35.69 15 11 H 0.07 3.61 7.76 -2.91 -0.02 3.58 15 12 C -0.02 -1.06 5.46 84.65 0.46 -0.60 15 13 N -0.91 -56.84 13.63 21.45 0.29 -56.55 15 14 Si 1.13 49.88 29.90 68.60 2.05 51.93 15 15 H -0.27 -10.75 7.11 99.48 0.71 -10.04 15 16 H -0.28 -12.17 7.11 99.48 0.71 -11.46 15 17 H -0.27 -11.41 7.11 99.48 0.71 -10.70 15 18 O -0.40 -21.46 10.12 -126.22 -1.28 -22.74 15 19 H 0.04 1.73 8.14 -2.38 -0.02 1.71 15 20 H 0.08 2.72 6.96 -2.39 -0.02 2.71 15 21 H 0.09 2.72 7.05 -2.39 -0.02 2.70 15 22 H 0.09 3.50 8.14 -2.39 -0.02 3.48 15 23 H 0.11 2.76 5.87 -2.39 -0.01 2.74 15 24 H 0.11 2.60 8.14 -2.39 -0.02 2.58 15 25 H 0.11 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.10 2.57 7.55 -2.39 -0.02 2.55 15 27 H 0.06 2.84 8.01 -2.39 -0.02 2.82 15 28 H 0.10 4.07 8.14 -2.39 -0.02 4.05 15 29 H 0.26 16.75 6.79 -92.71 -0.63 16.12 15 Total: -1.00 -67.26 243.13 3.42 -63.84 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: 1.27 Total: 15.98 kcal Atomic # 6 Polarization: -36.52 SS G_CDS: 2.45 Total: -34.07 kcal Atomic # 7 Polarization: -56.84 SS G_CDS: 0.29 Total: -56.55 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -2.64 Total: -41.14 kcal Atomic # 14 Polarization: 49.88 SS G_CDS: 2.05 Total: 51.93 kcal Total: -67.26 3.42 -63.84 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258514982.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.079 kcal (2) G-P(sol) polarization free energy of solvation -67.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds