Wall clock time and date at job start Mon Mar 30 2020 02:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42904 * 113.99714 * 2 1 4 4 C 1.50701 * 109.46836 * 179.97438 * 3 2 1 5 5 N 1.30275 * 126.27979 * 90.02322 * 4 3 2 6 6 N 1.28672 * 109.37886 * 179.97438 * 5 4 3 7 7 C 1.30271 * 109.37980 * 0.02562 * 6 5 4 8 8 C 1.50700 * 126.28254 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.46869 * 90.02532 * 8 7 6 10 10 H 1.08002 * 120.00299 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99942 * 179.72213 * 9 8 7 12 12 N 1.31514 * 119.99985 * 180.27663 * 11 9 8 13 13 Si 1.86800 * 119.99777 * 0.28166 * 11 9 8 14 14 H 1.48498 * 109.47109 * 89.99834 * 13 11 9 15 15 H 1.48507 * 109.46754 * 209.99574 * 13 11 9 16 16 H 1.48498 * 109.47278 * 329.99405 * 13 11 9 17 17 O 1.34364 * 126.28220 * 270.31245 * 4 3 2 18 18 H 1.09003 * 109.47364 * 60.00445 * 1 2 3 19 19 H 1.09007 * 109.47338 * 180.02562 * 1 2 3 20 20 H 1.08997 * 109.47380 * 299.99990 * 1 2 3 21 21 H 1.09001 * 109.47092 * 59.99636 * 3 2 1 22 22 H 1.08998 * 109.47170 * 299.99377 * 3 2 1 23 23 H 1.09004 * 109.47210 * 330.02825 * 8 7 6 24 24 H 1.08994 * 109.47551 * 210.02478 * 8 7 6 25 25 H 0.96996 * 119.99730 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2814 1.1259 -1.0492 6 7 5.5086 1.0291 -0.6746 7 6 5.5642 1.0242 0.6269 8 6 6.8121 0.9251 1.4658 9 6 7.3398 2.3085 1.7465 10 1 6.8230 3.1730 1.3568 11 6 8.4790 2.4708 2.5062 12 7 8.9365 3.6783 2.7557 13 14 9.3726 0.9755 3.1808 14 1 10.3911 0.5230 2.1994 15 1 10.0405 1.3327 4.4582 16 1 8.3967 -0.1176 3.4212 17 8 4.3042 1.1181 1.0841 18 1 -0.3634 0.5138 -0.8900 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3634 0.5138 0.8899 21 1 1.6885 1.8464 0.8900 22 1 1.6886 1.8464 -0.8900 23 1 7.5666 0.3506 0.9283 24 1 6.5787 0.4274 2.4070 25 1 9.7381 3.7924 3.2898 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259538373.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:31 Heat of formation + Delta-G solvation = -8.996361 kcal Electronic energy + Delta-G solvation = -12060.731105 eV Core-core repulsion = 9655.899498 eV Total energy + Delta-G solvation = -2404.831607 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -43.57085 -38.07620 -35.51795 -33.77941 -31.97181 -29.89450 -27.37155 -25.78713 -23.70363 -22.04067 -21.19329 -17.45961 -16.91653 -16.79509 -16.00854 -15.87744 -15.47243 -14.58205 -13.72231 -13.25343 -12.72532 -12.42266 -12.19583 -11.81066 -11.71118 -11.36318 -11.06329 -10.80521 -10.43004 -10.21386 -9.98652 -9.69867 -8.81458 -8.77076 -6.26304 -4.30813 1.66151 2.69356 3.01496 3.20194 3.26826 3.27581 3.81433 4.24335 4.42395 4.84885 4.95434 5.03369 5.12648 5.13670 5.37594 5.43540 5.88796 5.98991 6.24978 6.59053 6.77485 6.79115 7.29636 8.21159 8.72467 8.93236 9.27655 10.85822 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.071393 B = 0.007395 C = 0.007303 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 392.102158 B = 3785.356671 C = 3833.203574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.170 3.830 4 C 0.118 3.882 5 N -0.266 5.266 6 N -0.313 5.313 7 C 0.237 3.763 8 C 0.071 3.929 9 C -0.530 4.530 10 H 0.077 0.923 11 C 0.079 3.921 12 N -0.887 5.887 13 Si 0.879 3.121 14 H -0.270 1.270 15 H -0.281 1.281 16 H -0.262 1.262 17 O -0.220 6.220 18 H 0.047 0.953 19 H 0.090 0.910 20 H 0.046 0.954 21 H 0.082 0.918 22 H 0.095 0.905 23 H 0.067 0.933 24 H 0.054 0.946 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.561 -6.017 -1.732 14.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C 0.092 3.908 4 C -0.094 4.094 5 N -0.116 5.116 6 N -0.159 5.159 7 C 0.029 3.971 8 C 0.033 3.967 9 C -0.569 4.569 10 H 0.095 0.905 11 C -0.125 4.125 12 N -0.524 5.524 13 Si 0.704 3.296 14 H -0.195 1.195 15 H -0.207 1.207 16 H -0.187 1.187 17 O -0.100 6.100 18 H 0.065 0.935 19 H 0.109 0.891 20 H 0.064 0.936 21 H 0.100 0.900 22 H 0.113 0.887 23 H 0.085 0.915 24 H 0.072 0.928 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -12.941 -6.112 -2.856 14.594 hybrid contribution -0.021 -0.307 1.580 1.610 sum -12.962 -6.418 -1.276 14.521 Atomic orbital electron populations 1.22803 0.79778 1.03328 1.00432 1.87969 1.20448 1.26427 1.95571 1.20384 0.80972 0.85999 1.03403 1.26984 0.96216 1.05427 0.80761 1.74228 0.96951 1.14313 1.26062 1.74441 1.10741 1.20803 1.09920 1.28881 0.84850 0.92028 0.91385 1.18591 0.83717 1.00974 0.93465 1.20641 1.11656 0.89788 1.34790 0.90468 1.24868 0.96320 0.96263 0.95029 1.69862 1.23048 1.21341 1.38118 0.86794 0.80578 0.83038 0.79158 1.19489 1.20666 1.18685 1.84794 1.18433 1.69006 1.37728 0.93469 0.89127 0.93551 0.90027 0.88672 0.91533 0.92786 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 11.01 101.05 1.11 1.38 15 2 O -0.39 -5.20 10.69 -35.23 -0.38 -5.58 15 3 C 0.17 2.24 6.56 36.01 0.24 2.48 15 4 C 0.12 2.26 8.11 -12.94 -0.10 2.16 15 5 N -0.27 -5.77 12.22 32.55 0.40 -5.37 15 6 N -0.31 -7.47 12.22 32.55 0.40 -7.07 15 7 C 0.24 5.56 7.67 -12.94 -0.10 5.46 15 8 C 0.07 1.69 4.67 -29.03 -0.14 1.56 15 9 C -0.53 -14.86 9.65 -34.44 -0.33 -15.19 15 10 H 0.08 2.39 7.98 -52.49 -0.42 1.98 15 11 C 0.08 2.21 5.47 -17.82 -0.10 2.11 15 12 N -0.89 -26.31 13.96 55.43 0.77 -25.54 15 13 Si 0.88 20.18 27.47 -169.99 -4.67 15.51 15 14 H -0.27 -6.09 7.11 56.52 0.40 -5.69 15 15 H -0.28 -6.39 7.11 56.52 0.40 -5.99 15 16 H -0.26 -5.66 6.54 56.52 0.37 -5.29 15 17 O -0.22 -4.76 10.87 5.38 0.06 -4.70 15 18 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 15 19 H 0.09 0.63 8.14 -51.92 -0.42 0.21 15 20 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 15 21 H 0.08 0.88 8.14 -51.93 -0.42 0.45 15 22 H 0.10 1.02 8.14 -51.93 -0.42 0.59 15 23 H 0.07 1.51 7.58 -51.93 -0.39 1.12 15 24 H 0.05 1.21 7.19 -51.93 -0.37 0.83 15 25 H 0.27 7.40 8.31 -40.82 -0.34 7.06 15 LS Contribution 233.09 15.07 3.51 3.51 Total: -1.00 -32.42 233.09 -1.79 -34.22 By element: Atomic # 1 Polarization: -2.48 SS G_CDS: -2.47 Total: -4.94 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 0.58 Total: -0.03 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 1.57 Total: -37.98 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: -0.32 Total: -10.28 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -4.67 Total: 15.51 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -32.42 -1.79 -34.22 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259538373.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.220 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds