Wall clock time and date at job start Mon Mar 30 2020 02:25:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.50106 * 2 1 4 4 O 1.42878 * 109.47348 * 239.90349 * 2 1 3 5 5 C 1.42893 * 114.50443 * 304.92518 * 4 2 1 6 6 C 1.53361 * 109.31111 * 295.13476 * 5 4 2 7 7 C 1.51516 * 108.09500 * 52.23094 * 6 5 4 8 8 O 1.20762 * 121.21091 * 131.56164 * 7 6 5 9 9 C 1.51504 * 117.57400 * 311.58638 * 7 6 5 10 10 H 1.09002 * 109.73757 * 168.11146 * 9 7 6 11 11 C 1.50701 * 109.73675 * 288.76673 * 9 7 6 12 12 H 1.07997 * 120.00370 * 119.99816 * 11 9 7 13 13 C 1.37879 * 119.99601 * 299.99913 * 11 9 7 14 14 N 1.31507 * 120.00265 * 359.97438 * 13 11 9 15 15 Si 1.86800 * 119.99800 * 180.02562 * 13 11 9 16 16 H 1.48510 * 109.47242 * 59.99808 * 15 13 11 17 17 H 1.48503 * 109.47412 * 180.02562 * 15 13 11 18 18 H 1.48504 * 109.47031 * 300.00176 * 15 13 11 19 19 H 1.08996 * 109.47161 * 299.92459 * 1 2 3 20 20 H 1.09001 * 109.46844 * 59.92251 * 1 2 3 21 21 H 1.09000 * 109.47257 * 179.91840 * 1 2 3 22 22 H 1.09002 * 109.46586 * 180.02562 * 3 2 1 23 23 H 1.08998 * 109.47232 * 300.07715 * 3 2 1 24 24 H 1.08995 * 109.47227 * 60.08061 * 3 2 1 25 25 H 1.09002 * 109.50560 * 175.17274 * 5 4 2 26 26 H 1.09003 * 109.49964 * 55.09382 * 5 4 2 27 27 H 1.08996 * 109.73793 * 171.88397 * 6 5 4 28 28 H 1.08997 * 109.73919 * 292.54100 * 6 5 4 29 29 H 0.97002 * 120.00277 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0408 1.4423 0.0000 4 8 2.0063 -0.6755 -1.1654 5 6 1.5021 -2.0025 -1.3290 6 6 2.0119 -2.8837 -0.1820 7 6 1.6837 -2.1912 1.1251 8 8 1.1554 -2.7866 2.0332 9 6 2.0420 -0.7245 1.2510 10 1 1.5697 -0.3051 2.1393 11 6 3.5380 -0.5728 1.3504 12 1 4.0729 0.0031 0.6098 13 6 4.2240 -1.1695 2.3871 14 7 3.5727 -1.8704 3.2892 15 14 6.0783 -0.9809 2.5108 16 1 6.4224 0.4585 2.6342 17 1 6.5718 -1.7125 3.7051 18 1 6.7151 -1.5391 1.2908 19 1 -0.3633 0.5126 0.8906 20 1 -0.3633 0.5150 -0.8893 21 1 -0.3634 -1.0277 -0.0015 22 1 3.1308 1.4416 -0.0005 23 1 1.6766 1.9567 -0.8893 24 1 1.6789 1.9559 0.8907 25 1 1.8466 -2.4080 -2.2803 26 1 0.4123 -1.9819 -1.3154 27 1 1.5195 -3.8554 -0.2176 28 1 3.0905 -3.0142 -0.2694 29 1 4.0553 -2.2898 4.0188 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259601105.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:53 Heat of formation + Delta-G solvation = -113.415968 kcal Electronic energy + Delta-G solvation = -13605.153575 eV Core-core repulsion = 11299.334338 eV Total energy + Delta-G solvation = -2305.819238 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.13142 -38.63105 -35.39454 -34.02928 -32.21226 -29.71255 -28.09116 -26.03319 -24.33106 -21.62981 -19.83460 -18.37087 -17.32600 -16.91129 -16.51249 -16.00255 -15.55821 -15.26209 -14.67262 -14.23648 -13.63514 -13.50959 -13.24817 -12.92295 -12.84607 -12.69315 -12.58364 -12.52017 -12.23165 -12.07656 -11.35284 -11.00905 -10.70693 -10.23666 -9.86613 -8.18309 -6.32824 1.39211 1.41545 1.50190 1.60194 2.39023 2.94628 3.13399 3.64992 4.03550 4.09650 4.24286 4.30003 4.36500 4.48247 4.71011 4.87637 4.93203 4.98728 5.02608 5.16214 5.24695 5.28740 5.42840 5.56330 5.75280 6.11297 6.52881 6.76514 7.13010 7.34805 8.86761 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.036343 B = 0.016087 C = 0.014088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 770.255822 B = 1740.104212 C = 1987.031792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.120 3.880 3 C -0.121 4.121 4 O -0.376 6.376 5 C 0.072 3.928 6 C -0.199 4.199 7 C 0.369 3.631 8 O -0.515 6.515 9 C -0.019 4.019 10 H 0.015 0.985 11 C -0.507 4.507 12 H 0.080 0.920 13 C 0.001 3.999 14 N -0.915 5.915 15 Si 0.960 3.040 16 H -0.263 1.263 17 H -0.292 1.292 18 H -0.265 1.265 19 H 0.064 0.936 20 H 0.088 0.912 21 H 0.047 0.953 22 H 0.059 0.941 23 H 0.074 0.926 24 H 0.065 0.935 25 H 0.128 0.872 26 H 0.065 0.935 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.899 3.025 -9.672 10.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.080 3.920 3 C -0.178 4.178 4 O -0.295 6.295 5 C -0.005 4.005 6 C -0.237 4.237 7 C 0.249 3.751 8 O -0.392 6.392 9 C -0.038 4.038 10 H 0.033 0.967 11 C -0.545 4.545 12 H 0.098 0.902 13 C -0.199 4.199 14 N -0.553 5.553 15 Si 0.785 3.215 16 H -0.187 1.187 17 H -0.218 1.218 18 H -0.190 1.190 19 H 0.083 0.917 20 H 0.107 0.893 21 H 0.066 0.934 22 H 0.078 0.922 23 H 0.093 0.907 24 H 0.084 0.916 25 H 0.146 0.854 26 H 0.083 0.917 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.032 2.710 -9.170 10.032 hybrid contribution 0.863 -0.521 1.036 1.446 sum -2.169 2.189 -8.134 8.699 Atomic orbital electron populations 1.22454 0.95315 1.01898 1.03585 1.21615 0.92570 0.93735 0.84032 1.21629 1.02227 0.92032 1.01954 1.87835 1.71380 1.26916 1.43352 1.22666 0.98511 0.81781 0.97506 1.22926 1.04003 1.00649 0.96110 1.25623 0.69990 0.93037 0.86491 1.90192 1.36289 1.70054 1.42693 1.20093 0.97769 0.90995 0.94988 0.96728 1.21158 0.90690 1.32528 1.10129 0.90208 1.26042 1.03484 0.94925 0.95414 1.70242 1.37347 1.33671 1.14061 0.85558 0.79654 0.78824 0.77468 1.18722 1.21821 1.19016 0.91663 0.89296 0.93440 0.92218 0.90674 0.91563 0.85418 0.91701 0.89168 0.89125 0.93150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.72 7.97 71.98 0.57 -5.15 15 2 C 0.12 4.66 0.80 -10.67 -0.01 4.66 15 3 C -0.12 -4.21 8.49 71.98 0.61 -3.60 15 4 O -0.38 -14.03 10.00 -148.98 -1.49 -15.52 15 5 C 0.07 2.29 6.53 72.10 0.47 2.77 15 6 C -0.20 -7.93 6.28 30.23 0.19 -7.74 15 7 C 0.37 18.78 4.24 29.62 0.13 18.90 15 8 O -0.51 -30.12 17.36 -1.46 -0.03 -30.14 15 9 C -0.02 -0.95 1.71 -11.91 -0.02 -0.97 15 10 H 0.01 0.84 8.14 -2.39 -0.02 0.82 15 11 C -0.51 -26.97 7.60 25.60 0.19 -26.78 15 12 H 0.08 4.07 6.18 -2.91 -0.02 4.05 15 13 C 0.00 0.06 5.31 84.66 0.45 0.51 15 14 N -0.92 -55.83 11.97 21.45 0.26 -55.57 15 15 Si 0.96 43.50 29.54 68.60 2.03 45.52 15 16 H -0.26 -11.31 7.11 99.48 0.71 -10.61 15 17 H -0.29 -13.36 7.11 99.48 0.71 -12.65 15 18 H -0.27 -11.51 7.11 99.48 0.71 -10.80 15 19 H 0.06 2.11 8.14 -2.39 -0.02 2.09 15 20 H 0.09 2.32 8.14 -2.39 -0.02 2.30 15 21 H 0.05 1.58 5.75 -2.39 -0.01 1.57 15 22 H 0.06 2.25 6.20 -2.39 -0.01 2.23 15 23 H 0.07 2.11 8.14 -2.39 -0.02 2.09 15 24 H 0.07 2.22 8.14 -2.39 -0.02 2.20 15 25 H 0.13 3.10 8.14 -2.39 -0.02 3.08 15 26 H 0.06 1.85 6.12 -2.39 -0.01 1.83 15 27 H 0.09 3.22 8.14 -2.39 -0.02 3.20 15 28 H 0.09 3.80 8.14 -2.39 -0.02 3.78 15 29 H 0.26 15.32 8.31 -92.71 -0.77 14.55 15 Total: -1.00 -67.86 236.80 4.49 -63.37 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: 1.13 Total: 9.74 kcal Atomic # 6 Polarization: -19.98 SS G_CDS: 2.59 Total: -17.40 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.26 Total: -55.57 kcal Atomic # 8 Polarization: -44.15 SS G_CDS: -1.51 Total: -45.66 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.52 kcal Total: -67.86 4.49 -63.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601105.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.046 kcal (2) G-P(sol) polarization free energy of solvation -67.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds