Wall clock time and date at job start Mon Mar 30 2020 02:25:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53002 * 109.53892 * 2 1 4 4 O 1.42997 * 109.56950 * 239.86487 * 2 1 3 5 5 C 1.42888 * 114.51948 * 175.14763 * 4 2 1 6 6 C 1.53361 * 109.27822 * 64.94417 * 5 4 2 7 7 C 1.51515 * 108.09480 * 307.73858 * 6 5 4 8 8 O 1.20758 * 121.21356 * 228.40005 * 7 6 5 9 9 C 1.51504 * 117.56974 * 48.41866 * 7 6 5 10 10 H 1.09001 * 109.73583 * 191.89060 * 9 7 6 11 11 C 1.50696 * 109.74189 * 71.23262 * 9 7 6 12 12 H 1.07999 * 120.00319 * 240.65854 * 11 9 7 13 13 C 1.37885 * 119.99717 * 60.65237 * 11 9 7 14 14 N 1.31516 * 119.99913 * 180.02562 * 13 11 9 15 15 Si 1.86798 * 119.99766 * 0.02562 * 13 11 9 16 16 H 1.48500 * 109.47353 * 269.99586 * 15 13 11 17 17 H 1.48501 * 109.47293 * 30.00037 * 15 13 11 18 18 H 1.48504 * 109.46680 * 149.99835 * 15 13 11 19 19 H 1.08998 * 109.47243 * 299.90696 * 1 2 3 20 20 H 1.09002 * 109.46644 * 59.90313 * 1 2 3 21 21 H 1.08994 * 109.46820 * 179.90213 * 1 2 3 22 22 H 1.08998 * 109.47172 * 180.09302 * 3 2 1 23 23 H 1.09001 * 109.46883 * 300.09956 * 3 2 1 24 24 H 1.09002 * 109.47024 * 60.09241 * 3 2 1 25 25 H 1.08999 * 109.50621 * 304.99580 * 5 4 2 26 26 H 1.09008 * 109.49974 * 184.88034 * 5 4 2 27 27 H 1.08998 * 109.73762 * 188.09192 * 6 5 4 28 28 H 1.08998 * 109.78300 * 67.40933 * 6 5 4 29 29 H 0.97001 * 119.99646 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0417 1.4419 0.0000 4 8 2.0090 -0.6764 -1.1653 5 6 3.4282 -0.6440 -1.3285 6 6 4.0876 -1.4189 -0.1810 7 6 3.5442 -0.8777 1.1257 8 8 4.2814 -0.5793 2.0344 9 6 2.0420 -0.7250 1.2508 10 1 1.8043 -0.1393 2.1389 11 6 1.3988 -2.0841 1.3503 12 1 0.6854 -2.3999 0.6035 13 6 1.7210 -2.9245 2.3948 14 7 1.1600 -4.1109 2.4814 15 14 2.9545 -2.3780 3.6868 16 1 4.3212 -2.7805 3.2681 17 1 2.8964 -0.9014 3.8334 18 1 2.6263 -3.0177 4.9862 19 1 -0.3633 0.5124 0.8908 20 1 -0.3633 0.5154 -0.8892 21 1 -0.3633 -1.0276 -0.0018 22 1 3.1317 1.4406 -0.0017 23 1 1.6775 1.9567 -0.8891 24 1 1.6804 1.9557 0.8908 25 1 3.7726 0.3900 -1.3146 26 1 3.6957 -1.1046 -2.2795 27 1 5.1681 -1.2797 -0.2160 28 1 3.8501 -2.4791 -0.2674 29 1 1.3871 -4.7022 3.2161 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259601108.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:25:56 Heat of formation + Delta-G solvation = -83.969879 kcal Electronic energy + Delta-G solvation = -13683.034505 eV Core-core repulsion = 11378.492145 eV Total energy + Delta-G solvation = -2304.542359 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.81063 -37.32860 -33.66202 -32.36046 -30.81535 -28.49243 -26.76589 -24.14748 -22.60059 -20.27237 -18.21455 -16.87508 -15.92776 -15.55065 -14.79828 -14.58087 -14.08972 -13.43010 -13.23947 -12.67633 -12.39597 -12.32216 -11.74128 -11.50787 -11.45319 -11.32891 -10.97052 -10.63283 -10.43938 -9.93584 -9.73221 -9.22158 -8.82637 -8.77770 -8.35121 -6.20738 -4.23341 2.80170 3.37990 3.43764 3.65944 4.30230 4.37604 4.91647 5.17780 5.37346 5.40830 5.54637 5.61647 5.66417 5.78364 5.95676 6.10757 6.24986 6.33723 6.37718 6.52380 6.63216 6.71314 6.84609 7.03572 7.46818 7.90286 8.25737 8.44628 8.85116 9.36878 10.88654 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.036541 B = 0.018275 C = 0.015821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.071038 B = 1531.741981 C = 1769.327913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.132 3.868 3 C -0.183 4.183 4 O -0.362 6.362 5 C 0.073 3.927 6 C -0.202 4.202 7 C 0.353 3.647 8 O -0.485 6.485 9 C -0.048 4.048 10 H 0.058 0.942 11 C -0.501 4.501 12 H 0.094 0.906 13 C 0.074 3.926 14 N -0.885 5.885 15 Si 0.866 3.134 16 H -0.278 1.278 17 H -0.253 1.253 18 H -0.295 1.295 19 H 0.064 0.936 20 H 0.046 0.954 21 H 0.082 0.918 22 H 0.052 0.948 23 H 0.060 0.940 24 H 0.066 0.934 25 H 0.047 0.953 26 H 0.093 0.907 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.108 7.855 -6.139 10.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.093 3.907 3 C -0.240 4.240 4 O -0.281 6.281 5 C -0.004 4.004 6 C -0.240 4.240 7 C 0.233 3.767 8 O -0.363 6.363 9 C -0.068 4.068 10 H 0.076 0.924 11 C -0.538 4.538 12 H 0.112 0.888 13 C -0.130 4.130 14 N -0.521 5.521 15 Si 0.695 3.305 16 H -0.204 1.204 17 H -0.177 1.177 18 H -0.223 1.223 19 H 0.083 0.917 20 H 0.065 0.935 21 H 0.101 0.899 22 H 0.071 0.929 23 H 0.079 0.921 24 H 0.085 0.915 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.096 0.904 28 H 0.128 0.872 29 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.338 7.753 -5.696 9.900 hybrid contribution 1.082 0.059 0.984 1.464 sum 3.419 7.811 -4.712 9.742 Atomic orbital electron populations 1.21664 0.92068 1.04102 1.00433 1.21434 0.95390 0.88865 0.85015 1.22547 1.01178 0.97935 1.02382 1.87923 1.19753 1.76517 1.43933 1.22407 0.82381 0.98324 0.97332 1.22894 1.00535 1.04109 0.96439 1.25744 0.93627 0.70659 0.86634 1.90226 1.63235 1.41445 1.41370 1.20595 0.89983 1.00030 0.96158 0.92382 1.20737 1.25135 0.96705 1.11194 0.88769 1.25064 0.95748 0.94778 0.97411 1.69865 1.42547 1.07902 1.31833 0.87016 0.81425 0.80606 0.81403 1.20403 1.17730 1.22279 0.91693 0.93537 0.89934 0.92879 0.92087 0.91501 0.93444 0.88855 0.90393 0.87184 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.49 37.16 0.32 -1.94 15 2 C 0.13 2.56 0.80 -90.42 -0.07 2.49 15 3 C -0.18 -2.95 7.97 37.16 0.30 -2.66 15 4 O -0.36 -7.04 10.00 -35.23 -0.35 -7.40 15 5 C 0.07 1.20 6.53 37.34 0.24 1.45 15 6 C -0.20 -3.88 6.28 -27.30 -0.17 -4.05 15 7 C 0.35 8.21 3.73 -28.24 -0.11 8.10 15 8 O -0.48 -12.35 14.19 6.00 0.09 -12.26 15 9 C -0.05 -1.12 1.28 -92.34 -0.12 -1.24 15 10 H 0.06 1.41 7.20 -51.93 -0.37 1.04 15 11 C -0.50 -13.47 8.16 -34.44 -0.28 -13.75 15 12 H 0.09 2.69 6.45 -52.49 -0.34 2.35 15 13 C 0.07 2.12 5.45 -17.82 -0.10 2.02 15 14 N -0.88 -26.51 13.96 55.43 0.77 -25.74 15 15 Si 0.87 23.21 23.96 -169.99 -4.07 19.14 15 16 H -0.28 -7.67 7.05 56.52 0.40 -7.27 15 17 H -0.25 -6.79 5.96 56.52 0.34 -6.45 15 18 H -0.30 -7.78 7.11 56.52 0.40 -7.38 15 19 H 0.06 1.08 8.14 -51.93 -0.42 0.66 15 20 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 21 H 0.08 1.66 6.21 -51.93 -0.32 1.34 15 22 H 0.05 0.86 5.75 -51.93 -0.30 0.56 15 23 H 0.06 0.85 8.14 -51.93 -0.42 0.43 15 24 H 0.07 1.02 8.14 -51.93 -0.42 0.60 15 25 H 0.05 0.70 6.12 -51.93 -0.32 0.38 15 26 H 0.09 1.27 8.14 -51.92 -0.42 0.85 15 27 H 0.08 1.32 8.14 -51.93 -0.42 0.90 15 28 H 0.11 2.24 8.14 -51.93 -0.42 1.82 15 29 H 0.27 7.59 8.31 -40.82 -0.34 7.25 15 LS Contribution 227.95 15.07 3.44 3.44 Total: -1.00 -31.11 227.95 -3.93 -35.05 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -3.81 Total: -2.65 kcal Atomic # 6 Polarization: -9.58 SS G_CDS: 0.01 Total: -9.57 kcal Atomic # 7 Polarization: -26.51 SS G_CDS: 0.77 Total: -25.74 kcal Atomic # 8 Polarization: -19.39 SS G_CDS: -0.27 Total: -19.66 kcal Atomic # 14 Polarization: 23.21 SS G_CDS: -4.07 Total: 19.14 kcal Total LS contribution 3.44 Total: 3.44 kcal Total: -31.11 -3.93 -35.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259601108.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.925 kcal (2) G-P(sol) polarization free energy of solvation -31.110 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.035 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds