Wall clock time and date at job start Mon Mar 30 2020 02:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 109.50532 * 2 1 4 4 O 1.42888 * 109.50928 * 120.08469 * 2 1 3 5 5 C 1.42886 * 114.50395 * 184.90895 * 4 2 1 6 6 C 1.53358 * 109.27617 * 295.06909 * 5 4 2 7 7 C 1.51510 * 108.10073 * 52.25401 * 6 5 4 8 8 O 1.20763 * 121.21585 * 131.55494 * 7 6 5 9 9 C 1.51512 * 117.56840 * 311.83706 * 7 6 5 10 10 H 1.09008 * 109.73310 * 288.51067 * 9 7 6 11 11 C 1.53002 * 109.73747 * 167.81622 * 9 7 6 12 12 C 1.50699 * 109.47142 * 64.99680 * 11 9 7 13 13 H 1.07999 * 120.00397 * 359.97438 * 12 11 9 14 14 C 1.37875 * 120.00094 * 180.02562 * 12 11 9 15 15 N 1.31511 * 120.00564 * 180.02562 * 14 12 11 16 16 Si 1.86808 * 119.99668 * 359.97438 * 14 12 11 17 17 H 1.48496 * 109.47209 * 90.00168 * 16 14 12 18 18 H 1.48495 * 109.47054 * 210.00248 * 16 14 12 19 19 H 1.48505 * 109.46951 * 330.00136 * 16 14 12 20 20 H 1.09004 * 109.47008 * 299.91248 * 1 2 3 21 21 H 1.08989 * 109.47553 * 59.91765 * 1 2 3 22 22 H 1.08999 * 109.46973 * 179.97438 * 1 2 3 23 23 H 1.08999 * 109.50680 * 175.12530 * 5 4 2 24 24 H 1.09005 * 109.53172 * 55.02558 * 5 4 2 25 25 H 1.09000 * 109.74132 * 292.60176 * 6 5 4 26 26 H 1.09004 * 109.77508 * 171.92455 * 6 5 4 27 27 H 1.08997 * 109.46622 * 184.99707 * 11 9 7 28 28 H 1.09000 * 109.46711 * 304.99271 * 11 9 7 29 29 H 0.97000 * 120.00363 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 8 2.0072 -0.6751 1.1654 5 6 3.4261 -0.6420 1.3302 6 6 4.0872 -1.4170 0.1837 7 6 3.5449 -0.8767 -1.1238 8 8 4.2830 -0.5776 -2.0315 9 6 2.0431 -0.7193 -1.2485 10 1 1.5751 -1.7009 -1.3227 11 6 1.7118 0.1075 -2.4925 12 6 2.1340 -0.6491 -3.7255 13 1 2.5931 -1.6220 -3.6314 14 6 1.9351 -0.0986 -4.9739 15 7 2.3030 -0.7590 -6.0501 16 14 1.1415 1.5847 -5.1368 17 1 2.1939 2.6321 -5.1160 18 1 0.3952 1.6581 -6.4185 19 1 0.2046 1.8018 -4.0052 20 1 -0.3633 0.5125 0.8908 21 1 -0.3634 0.5150 -0.8891 22 1 -0.3633 -1.0277 -0.0005 23 1 3.6929 -1.1020 2.2817 24 1 3.7705 0.3921 1.3166 25 1 3.8494 -2.4771 0.2708 26 1 5.1677 -1.2780 0.2195 27 1 0.6384 0.2933 -2.5299 28 1 2.2437 1.0579 -2.4493 29 1 2.1634 -0.3716 -6.9283 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259710394.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:12 Heat of formation + Delta-G solvation = -116.791778 kcal Electronic energy + Delta-G solvation = -13099.618908 eV Core-core repulsion = 10793.653285 eV Total energy + Delta-G solvation = -2305.965624 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.26164 -38.80655 -35.89485 -34.16536 -32.69995 -30.68732 -27.89914 -25.24331 -23.20326 -22.54968 -20.21341 -19.07931 -17.39493 -16.97067 -16.81815 -16.32590 -15.95371 -15.36963 -14.91750 -14.55970 -13.99701 -13.82717 -13.41180 -13.17275 -13.03757 -12.82632 -12.33018 -12.27933 -12.03637 -11.80647 -11.48773 -11.35333 -10.77177 -10.55423 -10.16179 -8.25925 -6.26722 1.11311 1.32711 1.35686 1.46070 2.36253 2.74542 3.06499 3.17186 3.77205 3.85508 4.09727 4.10442 4.24387 4.46875 4.53986 4.66107 4.78656 4.85701 4.94795 5.03853 5.05001 5.22244 5.30316 5.46516 5.64904 6.19376 6.29402 6.69191 6.78374 7.33162 8.92193 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.043384 B = 0.012270 C = 0.010383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 645.241850 B = 2281.377574 C = 2696.157011 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.102 3.898 3 H 0.063 0.937 4 O -0.382 6.382 5 C 0.070 3.930 6 C -0.197 4.197 7 C 0.341 3.659 8 O -0.475 6.475 9 C -0.155 4.155 10 H 0.099 0.901 11 C 0.003 3.997 12 C -0.502 4.502 13 H 0.020 0.980 14 C -0.005 4.005 15 N -0.959 5.959 16 Si 0.949 3.051 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.233 1.233 20 H 0.083 0.917 21 H 0.073 0.927 22 H 0.066 0.934 23 H 0.140 0.860 24 H 0.060 0.940 25 H 0.116 0.884 26 H 0.105 0.895 27 H 0.044 0.956 28 H 0.009 0.991 29 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.248 2.775 17.124 17.492 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.045 3.955 3 H 0.081 0.919 4 O -0.301 6.301 5 C -0.007 4.007 6 C -0.235 4.235 7 C 0.217 3.783 8 O -0.348 6.348 9 C -0.174 4.174 10 H 0.117 0.883 11 C -0.034 4.034 12 C -0.540 4.540 13 H 0.039 0.961 14 C -0.200 4.200 15 N -0.601 5.601 16 Si 0.772 3.228 17 H -0.202 1.202 18 H -0.208 1.208 19 H -0.156 1.156 20 H 0.102 0.898 21 H 0.091 0.909 22 H 0.085 0.915 23 H 0.157 0.843 24 H 0.079 0.921 25 H 0.134 0.866 26 H 0.123 0.877 27 H 0.062 0.938 28 H 0.027 0.973 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -1.985 2.853 16.606 16.966 hybrid contribution 0.322 0.331 -1.212 1.297 sum -1.662 3.184 15.394 15.808 Atomic orbital electron populations 1.21808 0.91055 1.03615 1.03322 1.22083 0.96851 0.94397 0.82216 0.91864 1.87861 1.22239 1.76897 1.43068 1.22778 0.79767 0.99912 0.98199 1.23083 1.03126 1.03703 0.93599 1.25492 0.91808 0.72792 0.88212 1.90451 1.62525 1.39074 1.42771 1.22486 0.94997 1.02415 0.97478 0.88265 1.19433 0.97274 0.94828 0.91904 1.21218 1.37945 1.03568 0.91288 0.96129 1.26030 0.96432 1.02205 0.95376 1.70084 1.50566 1.40796 0.98612 0.85688 0.79383 0.79013 0.78738 1.20247 1.20781 1.15604 0.89787 0.90856 0.91478 0.84273 0.92122 0.86562 0.87697 0.93782 0.97291 0.92798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.55 9.38 71.98 0.68 -2.87 15 2 C 0.10 3.01 2.70 30.58 0.08 3.09 15 3 H 0.06 1.81 8.12 -2.39 -0.02 1.79 15 4 O -0.38 -9.89 10.33 -148.98 -1.54 -11.43 15 5 C 0.07 1.46 6.85 72.10 0.49 1.95 15 6 C -0.20 -5.19 6.40 30.23 0.19 -4.99 15 7 C 0.34 13.61 6.44 29.62 0.19 13.80 15 8 O -0.47 -24.32 15.70 -1.46 -0.02 -24.34 15 9 C -0.15 -6.00 2.05 -11.30 -0.02 -6.03 15 10 H 0.10 3.92 8.14 -2.38 -0.02 3.90 15 11 C 0.00 0.14 3.13 29.85 0.09 0.23 15 12 C -0.50 -30.36 8.19 25.60 0.21 -30.15 15 13 H 0.02 1.39 7.69 -2.91 -0.02 1.37 15 14 C -0.01 -0.33 5.47 84.65 0.46 0.13 15 15 N -0.96 -63.54 13.96 21.45 0.30 -63.24 15 16 Si 0.95 45.85 27.47 68.60 1.88 47.74 15 17 H -0.28 -13.24 7.11 99.48 0.71 -12.54 15 18 H -0.28 -13.27 7.11 99.48 0.71 -12.56 15 19 H -0.23 -9.93 6.54 99.48 0.65 -9.28 15 20 H 0.08 1.70 8.14 -2.38 -0.02 1.68 15 21 H 0.07 1.93 6.63 -2.39 -0.02 1.91 15 22 H 0.07 1.65 8.14 -2.39 -0.02 1.64 15 23 H 0.14 1.86 8.14 -2.39 -0.02 1.84 15 24 H 0.06 1.19 8.13 -2.38 -0.02 1.17 15 25 H 0.12 2.73 8.14 -2.39 -0.02 2.71 15 26 H 0.10 2.48 8.14 -2.38 -0.02 2.46 15 27 H 0.04 1.94 5.61 -2.39 -0.01 1.93 15 28 H 0.01 0.43 7.57 -2.39 -0.02 0.41 15 29 H 0.26 16.25 8.31 -92.71 -0.77 15.48 15 Total: -1.00 -76.26 239.72 4.07 -72.19 By element: Atomic # 1 Polarization: 2.84 SS G_CDS: 1.07 Total: 3.91 kcal Atomic # 6 Polarization: -27.21 SS G_CDS: 2.38 Total: -24.83 kcal Atomic # 7 Polarization: -63.54 SS G_CDS: 0.30 Total: -63.24 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.56 Total: -35.77 kcal Atomic # 14 Polarization: 45.85 SS G_CDS: 1.88 Total: 47.74 kcal Total: -76.26 4.07 -72.19 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259710394.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.600 kcal (2) G-P(sol) polarization free energy of solvation -76.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.792 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds