Wall clock time and date at job start Mon Mar 30 2020 02:46:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08997 * 109.50110 * 2 1 4 4 O 1.42886 * 109.50278 * 239.87687 * 2 1 3 5 5 C 1.42888 * 114.49711 * 175.12886 * 4 2 1 6 6 C 1.52913 * 109.37047 * 64.78202 * 5 4 2 7 7 C 1.51512 * 108.33244 * 308.01645 * 6 5 4 8 8 O 1.20763 * 121.21514 * 228.34327 * 7 6 5 9 9 C 1.51510 * 117.56841 * 48.06541 * 7 6 5 10 10 H 1.09009 * 109.73455 * 192.20443 * 9 7 6 11 11 C 1.52998 * 109.73556 * 71.55937 * 9 7 6 12 12 C 1.50704 * 109.47392 * 64.99810 * 11 9 7 13 13 H 1.07991 * 119.99926 * 359.97438 * 12 11 9 14 14 C 1.37871 * 119.99560 * 180.02562 * 12 11 9 15 15 N 1.31507 * 120.00664 * 359.97438 * 14 12 11 16 16 Si 1.86810 * 119.99637 * 179.97438 * 14 12 11 17 17 H 1.48505 * 109.46783 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.47191 * 119.99594 * 16 14 12 19 19 H 1.48504 * 109.47195 * 240.00057 * 16 14 12 20 20 H 1.09008 * 109.47198 * 299.92787 * 1 2 3 21 21 H 1.09001 * 109.46879 * 59.92340 * 1 2 3 22 22 H 1.08994 * 109.47576 * 179.97438 * 1 2 3 23 23 H 1.09001 * 109.50862 * 184.87108 * 5 4 2 24 24 H 1.09002 * 109.50753 * 304.95377 * 5 4 2 25 25 H 1.08995 * 109.67962 * 188.25921 * 6 5 4 26 26 H 1.08993 * 109.55906 * 67.70453 * 6 5 4 27 27 H 1.09005 * 109.46966 * 184.99808 * 11 9 7 28 28 H 1.09001 * 109.47169 * 304.99428 * 11 9 7 29 29 H 0.97003 * 120.00388 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0274 0.0000 4 8 2.0070 -0.6759 -1.1650 5 6 3.4260 -0.6437 -1.3293 6 6 4.0868 -1.4125 -0.1846 7 6 3.5440 -0.8773 1.1248 8 8 4.2820 -0.5786 2.0328 9 6 2.0419 -0.7245 1.2510 10 1 1.8049 -0.1382 2.1389 11 6 1.3891 -2.1043 1.3538 12 6 1.8273 -2.7736 2.6310 13 1 2.5041 -2.2658 3.3020 14 6 1.3649 -4.0347 2.9421 15 7 0.5411 -4.6533 2.1248 16 14 1.9087 -4.8646 4.5249 17 1 2.8307 -3.9651 5.2639 18 1 0.7195 -5.1544 5.3657 19 1 2.6087 -6.1341 4.2030 20 1 -0.3634 0.5127 0.8907 21 1 -0.3633 0.5150 -0.8893 22 1 -0.3634 -1.0276 -0.0005 23 1 3.6929 -1.1042 -2.2806 24 1 3.7705 0.3904 -1.3164 25 1 5.1667 -1.2693 -0.2214 26 1 3.8523 -2.4732 -0.2742 27 1 0.3046 -1.9940 1.3550 28 1 1.6913 -2.7137 0.5020 29 1 0.2155 -5.5404 2.3439 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259710398.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:15 Heat of formation + Delta-G solvation = -100.067395 kcal Electronic energy + Delta-G solvation = -13154.683079 eV Core-core repulsion = 10849.442679 eV Total energy + Delta-G solvation = -2305.240400 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -39.76531 -37.32917 -34.02459 -32.31971 -31.30313 -28.55136 -26.00414 -23.62927 -22.51534 -20.98783 -18.14122 -16.57348 -16.07416 -15.71501 -14.91702 -14.59647 -14.56545 -13.89809 -13.34406 -12.57920 -12.16341 -12.12894 -11.92921 -11.66670 -11.36533 -11.10723 -10.98032 -10.56735 -10.41037 -10.15672 -9.74774 -9.24587 -8.94655 -8.68404 -8.33594 -6.04107 -4.06902 2.67611 3.30397 3.38127 3.45299 4.04107 4.44793 4.67709 5.16465 5.19231 5.32510 5.38735 5.49029 5.49742 5.73176 5.85963 6.02193 6.21019 6.24762 6.30237 6.48029 6.63161 6.81760 7.54126 7.60030 7.67584 7.94803 8.17480 8.33607 9.00619 9.58322 11.06311 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.039141 B = 0.012206 C = 0.010767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.194385 B = 2293.318951 C = 2599.860456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.096 3.904 3 H 0.048 0.952 4 O -0.372 6.372 5 C 0.073 3.927 6 C -0.207 4.207 7 C 0.383 3.617 8 O -0.470 6.470 9 C -0.160 4.160 10 H 0.089 0.911 11 C 0.040 3.960 12 C -0.529 4.529 13 H 0.057 0.943 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.272 1.272 18 H -0.283 1.283 19 H -0.283 1.283 20 H 0.069 0.931 21 H 0.055 0.945 22 H 0.081 0.919 23 H 0.099 0.901 24 H 0.046 0.954 25 H 0.087 0.913 26 H 0.112 0.888 27 H 0.036 0.964 28 H 0.029 0.971 29 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.340 7.491 -6.513 10.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.039 3.961 3 H 0.066 0.934 4 O -0.291 6.291 5 C -0.004 4.004 6 C -0.245 4.245 7 C 0.259 3.741 8 O -0.344 6.344 9 C -0.179 4.179 10 H 0.107 0.893 11 C 0.003 3.997 12 C -0.567 4.567 13 H 0.076 0.924 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.210 1.210 20 H 0.088 0.912 21 H 0.074 0.926 22 H 0.100 0.900 23 H 0.117 0.883 24 H 0.065 0.935 25 H 0.105 0.895 26 H 0.130 0.870 27 H 0.054 0.946 28 H 0.047 0.953 29 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.508 7.402 -6.180 9.964 hybrid contribution 0.495 -0.574 1.073 1.314 sum 3.003 6.828 -5.107 9.040 Atomic orbital electron populations 1.21814 0.92617 1.04318 1.01418 1.22212 0.95880 0.93490 0.84537 0.93367 1.87904 1.20400 1.76941 1.43807 1.22375 0.81585 0.98621 0.97806 1.22922 1.01516 1.04173 0.95914 1.24664 0.91554 0.71071 0.86805 1.90308 1.62520 1.40094 1.41491 1.22806 0.93594 1.03283 0.98225 0.89289 1.19100 0.96196 0.86876 0.97523 1.21360 1.28350 1.01189 1.05832 0.92431 1.24964 0.94967 0.97256 0.96847 1.69965 1.32496 1.14116 1.36466 0.86572 0.78588 0.79464 0.83722 1.19649 1.20881 1.20951 0.91201 0.92628 0.90022 0.88302 0.93530 0.89473 0.86972 0.94560 0.95265 0.92965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 9.01 37.16 0.33 -1.94 15 2 C 0.10 1.65 2.96 -26.55 -0.08 1.57 15 3 H 0.05 0.73 8.13 -51.93 -0.42 0.31 15 4 O -0.37 -6.42 10.04 -35.23 -0.35 -6.77 15 5 C 0.07 1.05 6.83 37.11 0.25 1.30 15 6 C -0.21 -3.49 6.11 -27.53 -0.17 -3.66 15 7 C 0.38 7.99 5.51 -28.24 -0.16 7.84 15 8 O -0.47 -11.07 17.91 6.00 0.11 -10.96 15 9 C -0.16 -3.32 2.27 -91.19 -0.21 -3.53 15 10 H 0.09 1.88 8.14 -51.92 -0.42 1.46 15 11 C 0.04 1.00 3.88 -27.88 -0.11 0.89 15 12 C -0.53 -15.01 8.61 -34.44 -0.30 -15.31 15 13 H 0.06 1.68 7.61 -52.49 -0.40 1.28 15 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 15 15 N -0.89 -26.33 13.29 55.43 0.74 -25.59 15 16 Si 0.89 22.04 29.54 -169.99 -5.02 17.02 15 17 H -0.27 -6.77 7.11 56.52 0.40 -6.37 15 18 H -0.28 -6.87 7.11 56.52 0.40 -6.47 15 19 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 20 H 0.07 1.00 8.14 -51.92 -0.42 0.58 15 21 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 22 H 0.08 1.47 6.28 -51.93 -0.33 1.14 15 23 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 24 H 0.05 0.58 8.13 -51.93 -0.42 0.16 15 25 H 0.09 1.28 8.14 -51.93 -0.42 0.85 15 26 H 0.11 2.01 7.84 -51.93 -0.41 1.61 15 27 H 0.04 0.94 6.14 -51.93 -0.32 0.62 15 28 H 0.03 0.77 7.49 -51.93 -0.39 0.39 15 29 H 0.26 7.27 8.31 -40.82 -0.34 6.93 15 LS Contribution 243.40 15.07 3.67 3.67 Total: -1.00 -31.49 243.40 -5.32 -36.81 By element: Atomic # 1 Polarization: 0.93 SS G_CDS: -3.93 Total: -3.00 kcal Atomic # 6 Polarization: -10.65 SS G_CDS: -0.52 Total: -11.17 kcal Atomic # 7 Polarization: -26.33 SS G_CDS: 0.74 Total: -25.59 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.25 Total: -17.74 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.02 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -31.49 -5.32 -36.81 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259710398.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.261 kcal (2) G-P(sol) polarization free energy of solvation -31.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds