Wall clock time and date at job start Mon Mar 30 2020 02:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86795 * 120.00271 * 2 1 4 4 H 1.48498 * 109.47105 * 239.99961 * 3 2 1 5 5 H 1.48506 * 109.46947 * 119.99937 * 3 2 1 6 6 H 1.48501 * 109.47012 * 0.02562 * 3 2 1 7 7 C 1.37875 * 119.99460 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99939 * 175.43079 * 7 2 1 9 9 C 1.50703 * 120.00409 * 355.42818 * 7 2 1 10 10 H 1.09001 * 109.31050 * 34.73913 * 9 7 2 11 11 C 1.52624 * 109.31123 * 275.13023 * 9 7 2 12 12 C 1.52952 * 110.26082 * 172.74566 * 11 9 7 13 13 S 1.81702 * 109.12836 * 65.63440 * 12 11 9 14 14 C 1.81853 * 102.18080 * 304.12814 * 13 12 11 15 15 C 1.52793 * 109.31328 * 154.16330 * 9 7 2 16 16 C 1.52954 * 117.70570 * 39.53403 * 15 9 7 17 17 C 1.52932 * 117.74448 * 330.71629 * 15 9 7 18 18 H 0.97001 * 120.00501 * 185.46744 * 1 2 3 19 19 H 1.08994 * 109.33937 * 292.99348 * 11 9 7 20 20 H 1.08999 * 109.33400 * 52.50531 * 11 9 7 21 21 H 1.08994 * 109.52556 * 185.52779 * 12 11 9 22 22 H 1.08998 * 109.52722 * 305.67001 * 12 11 9 23 23 H 1.08998 * 109.68117 * 170.33244 * 14 13 12 24 24 H 1.08997 * 109.68449 * 290.89456 * 14 13 12 25 25 H 1.08997 * 117.50596 * 359.77391 * 16 15 9 26 26 H 1.08998 * 117.50001 * 144.80773 * 16 15 9 27 27 H 1.08999 * 117.49624 * 215.13087 * 17 15 9 28 28 H 1.08995 * 117.49872 * 0.13092 * 17 15 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 3.1030 1.6962 1.2126 6 1 1.2843 2.7464 0.0006 7 6 2.0045 -1.1941 -0.0005 8 1 3.0819 -1.1956 -0.0750 9 6 1.2545 -2.4972 0.1029 10 1 0.3038 -2.4086 -0.4228 11 6 0.9910 -2.8126 1.5728 12 6 0.0780 -4.0334 1.6971 13 16 0.9501 -5.4962 1.0638 14 6 1.3952 -4.9777 -0.6215 15 6 2.0818 -3.6088 -0.5408 16 6 3.5941 -3.5932 -0.3123 17 6 3.0232 -3.2252 -1.6834 18 1 -0.4851 -0.8362 0.0800 19 1 1.9374 -3.0171 2.0733 20 1 0.5132 -1.9547 2.0459 21 1 -0.1817 -4.1889 2.7442 22 1 -0.8301 -3.8697 1.1169 23 1 2.0775 -5.7052 -1.0612 24 1 0.4954 -4.9017 -1.2319 25 1 4.0030 -2.7862 0.2957 26 1 4.0990 -4.5546 -0.2189 27 1 3.1525 -3.9445 -2.4920 28 1 3.0561 -2.1762 -1.9776 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259772060.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:16 Heat of formation + Delta-G solvation = 5.263708 kcal Electronic energy + Delta-G solvation = -11176.644985 eV Core-core repulsion = 9318.724955 eV Total energy + Delta-G solvation = -1857.920030 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.17507 -33.73762 -31.88773 -28.17741 -26.96525 -23.32715 -21.81651 -21.07364 -18.52248 -16.50583 -16.05928 -14.85770 -13.97057 -13.80571 -13.60817 -13.06169 -12.71363 -12.26818 -11.54165 -11.24761 -11.11280 -10.90532 -10.68838 -10.61272 -10.17140 -10.02089 -9.42680 -9.08223 -8.79860 -8.43853 -8.30502 -7.17141 -6.38818 -4.10546 2.34175 3.02703 3.40243 3.41488 3.59908 4.47950 4.66602 5.28416 5.32110 5.50119 5.62374 5.73557 5.79602 5.82895 6.05696 6.13628 6.23260 6.35999 6.59425 6.77874 6.84852 6.98675 7.08166 7.29570 7.52727 8.17192 8.38674 8.83285 9.60413 10.98723 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045847 B = 0.013300 C = 0.011326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.583779 B = 2104.714377 C = 2471.513275 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.021 3.979 3 Si 1.064 2.936 4 H -0.288 1.288 5 H -0.288 1.288 6 H -0.283 1.283 7 C -0.588 4.588 8 H 0.056 0.944 9 C 0.062 3.938 10 H 0.033 0.967 11 C -0.106 4.106 12 C -0.072 4.072 13 S -0.298 6.298 14 C -0.034 4.034 15 C -0.113 4.113 16 C -0.163 4.163 17 C -0.161 4.161 18 H 0.269 0.731 19 H 0.058 0.942 20 H 0.064 0.936 21 H 0.087 0.913 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.077 0.923 25 H 0.098 0.902 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.816 -6.384 0.012 6.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.184 4.184 3 Si 0.892 3.108 4 H -0.215 1.215 5 H -0.214 1.214 6 H -0.209 1.209 7 C -0.626 4.626 8 H 0.074 0.926 9 C 0.043 3.957 10 H 0.051 0.949 11 C -0.145 4.145 12 C -0.220 4.220 13 S -0.071 6.071 14 C -0.182 4.182 15 C -0.114 4.114 16 C -0.200 4.200 17 C -0.200 4.200 18 H 0.081 0.919 19 H 0.077 0.923 20 H 0.083 0.917 21 H 0.106 0.894 22 H 0.092 0.908 23 H 0.108 0.892 24 H 0.096 0.904 25 H 0.117 0.883 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.783 -5.738 0.481 6.395 hybrid contribution -0.079 -0.632 -0.479 0.798 sum 2.704 -6.370 0.002 6.920 Atomic orbital electron populations 1.70803 1.06858 1.30950 1.46175 1.25773 0.96497 1.02491 0.93616 0.83605 0.74974 0.75624 0.76554 1.21474 1.21448 1.20863 1.21920 0.94685 0.90982 1.55043 0.92582 1.18314 0.95337 0.91960 0.90068 0.94922 1.21894 0.97469 0.93882 1.01276 1.23504 1.00394 0.95691 1.02435 1.86252 1.75395 1.26821 1.18620 1.22989 1.02623 0.98665 0.93945 1.21658 0.92004 0.94229 1.03504 1.22850 0.95668 1.01446 1.00072 1.22990 1.03832 1.02512 0.90712 0.91934 0.92316 0.91710 0.89408 0.90763 0.89235 0.90408 0.88335 0.90710 0.90935 0.87394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -26.43 13.62 55.43 0.76 -25.67 15 2 C 0.02 0.56 5.45 -17.82 -0.10 0.46 15 3 Si 1.06 24.38 29.91 -169.99 -5.08 19.30 15 4 H -0.29 -6.34 7.11 56.52 0.40 -5.94 15 5 H -0.29 -6.36 7.11 56.52 0.40 -5.95 15 6 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 7 C -0.59 -15.32 6.64 -34.44 -0.23 -15.55 15 8 H 0.06 1.45 5.55 -52.49 -0.29 1.16 15 9 C 0.06 1.46 1.68 -92.07 -0.15 1.30 15 10 H 0.03 0.86 6.65 -51.93 -0.35 0.51 15 11 C -0.11 -2.31 4.98 -26.95 -0.13 -2.45 15 12 C -0.07 -1.36 6.40 37.13 0.24 -1.12 15 13 S -0.30 -5.44 22.33 -107.50 -2.40 -7.84 15 14 C -0.03 -0.62 6.19 37.34 0.23 -0.39 15 15 C -0.11 -2.29 1.84 -154.49 -0.28 -2.58 15 16 C -0.16 -3.13 9.45 -26.75 -0.25 -3.38 15 17 C -0.16 -3.11 9.44 -26.76 -0.25 -3.36 15 18 H 0.27 7.76 6.66 -40.82 -0.27 7.48 15 19 H 0.06 1.30 8.14 -51.93 -0.42 0.87 15 20 H 0.06 1.53 8.12 -51.93 -0.42 1.11 15 21 H 0.09 1.48 8.14 -51.93 -0.42 1.06 15 22 H 0.07 1.39 8.14 -51.93 -0.42 0.97 15 23 H 0.09 1.45 8.12 -51.93 -0.42 1.03 15 24 H 0.08 1.38 8.14 -51.93 -0.42 0.95 15 25 H 0.10 2.03 6.66 -51.93 -0.35 1.68 15 26 H 0.07 1.29 8.14 -51.93 -0.42 0.86 15 27 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 28 H 0.11 2.30 6.86 -51.93 -0.36 1.95 15 LS Contribution 236.73 15.07 3.57 3.57 Total: -1.00 -27.48 236.73 -7.88 -35.36 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -3.79 Total: 2.35 kcal Atomic # 6 Polarization: -26.12 SS G_CDS: -0.94 Total: -27.05 kcal Atomic # 7 Polarization: -26.43 SS G_CDS: 0.76 Total: -25.67 kcal Atomic # 14 Polarization: 24.38 SS G_CDS: -5.08 Total: 19.30 kcal Atomic # 16 Polarization: -5.44 SS G_CDS: -2.40 Total: -7.84 kcal Total LS contribution 3.57 Total: 3.57 kcal Total: -27.48 -7.88 -35.36 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259772060.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.622 kcal (2) G-P(sol) polarization free energy of solvation -27.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds