Wall clock time and date at job start Mon Mar 30 2020 02:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31248 * 1 3 3 Si 1.86805 * 120.00005 * 2 1 4 4 H 1.48500 * 109.47328 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46994 * 300.00532 * 3 2 1 6 6 H 1.48497 * 109.47219 * 60.00120 * 3 2 1 7 7 C 1.39012 * 120.00384 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.37570 * 119.99788 * 359.97438 * 7 2 1 10 10 C 1.36665 * 126.88942 * 180.02562 * 9 7 2 11 11 C 1.34940 * 106.72807 * 179.74079 * 10 9 7 12 12 C 1.50700 * 125.48360 * 179.97438 * 11 10 9 13 13 H 1.09003 * 109.47462 * 245.00131 * 12 11 10 14 14 O 1.42899 * 109.47534 * 5.00361 * 12 11 10 15 15 C 1.53001 * 109.47122 * 125.00311 * 12 11 10 16 16 N 1.46901 * 109.47167 * 180.02562 * 15 12 11 17 17 N 1.33453 * 109.02976 * 0.02562 * 11 10 9 18 18 N 1.28754 * 109.98784 * 359.97438 * 17 11 10 19 19 H 0.97002 * 119.99946 * 359.97438 * 1 2 3 20 20 H 1.08002 * 126.63253 * 359.72040 * 10 9 7 21 21 H 0.96700 * 114.00364 * 59.99394 * 14 12 11 22 22 H 1.09001 * 109.46911 * 299.99687 * 15 12 11 23 23 H 1.08997 * 109.47027 * 59.99915 * 15 12 11 24 24 H 1.00901 * 111.00295 * 56.04554 * 16 15 12 25 25 H 1.00902 * 110.99683 * 179.97438 * 16 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3125 0.0000 0.0000 3 14 2.2465 1.6178 0.0000 4 1 3.7065 1.3465 -0.0006 5 1 1.8876 2.3965 -1.2125 6 1 1.8878 2.3965 1.2125 7 6 2.0076 -1.2038 -0.0005 8 1 3.0876 -1.2038 -0.0010 9 7 1.3198 -2.3952 -0.0005 10 6 1.8563 -3.6522 -0.0005 11 6 0.8202 -4.5167 0.0053 12 6 0.9346 -6.0193 0.0070 13 1 0.5251 -6.4160 -0.9221 14 8 2.3096 -6.3923 0.1189 15 6 0.1536 -6.5890 1.1928 16 7 0.2657 -8.0537 1.1948 17 7 -0.3222 -3.8268 0.0083 18 7 -0.0734 -2.5635 0.0052 19 1 -0.4850 0.8401 0.0004 20 1 2.9063 -3.9047 -0.0048 21 1 2.7396 -6.0724 0.9238 22 1 0.5632 -6.1924 2.1218 23 1 -0.8951 -6.3046 1.1075 24 1 1.2324 -8.3424 1.2084 25 1 -0.2418 -8.4541 1.9695 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259780516.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:04:57 Heat of formation + Delta-G solvation = 34.712119 kcal Electronic energy + Delta-G solvation = -12373.372692 eV Core-core repulsion = 10002.729178 eV Total energy + Delta-G solvation = -2370.643514 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.22634 -37.14949 -34.12691 -33.39878 -31.39603 -29.62175 -26.76750 -25.23003 -21.99431 -21.25727 -19.72505 -17.97135 -16.19344 -15.74139 -15.52831 -15.04538 -14.23485 -13.79604 -13.56053 -13.06919 -12.73688 -11.97971 -11.83389 -11.62117 -11.43339 -11.01919 -10.62485 -10.26493 -9.92252 -9.36739 -9.28923 -8.75067 -8.46756 -7.46578 -6.86650 -4.67547 2.78153 2.92957 3.00175 3.28523 3.65036 3.99188 4.54858 4.73686 4.77525 4.99419 5.52995 5.60258 5.82590 6.27958 6.29106 6.40678 6.72106 6.88178 7.01578 7.33117 7.61842 7.71016 7.85763 8.03810 8.46174 9.06797 10.09790 10.14146 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.085673 B = 0.008463 C = 0.007912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 326.744980 B = 3307.900871 C = 3538.026214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.759 5.759 2 C 0.047 3.953 3 Si 0.943 3.057 4 H -0.260 1.260 5 H -0.270 1.270 6 H -0.271 1.271 7 C -0.315 4.315 8 H 0.122 0.878 9 N -0.147 5.147 10 C -0.108 4.108 11 C -0.112 4.112 12 C 0.211 3.789 13 H 0.104 0.896 14 O -0.560 6.560 15 C 0.041 3.959 16 N -0.849 5.849 17 N -0.320 5.320 18 N -0.092 5.092 19 H 0.282 0.718 20 H 0.157 0.843 21 H 0.369 0.631 22 H 0.024 0.976 23 H 0.086 0.914 24 H 0.341 0.659 25 H 0.335 0.665 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.862 -4.643 3.027 7.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.386 5.386 2 C -0.173 4.173 3 Si 0.766 3.234 4 H -0.184 1.184 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.451 4.451 8 H 0.139 0.861 9 N 0.082 4.918 10 C -0.262 4.262 11 C -0.260 4.260 12 C 0.149 3.851 13 H 0.122 0.878 14 O -0.363 6.363 15 C -0.090 4.090 16 N -0.379 5.379 17 N -0.181 5.181 18 N -0.069 5.069 19 H 0.093 0.907 20 H 0.175 0.825 21 H 0.215 0.785 22 H 0.043 0.957 23 H 0.105 0.895 24 H 0.154 0.846 25 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 2.693 -4.064 1.740 5.176 hybrid contribution 2.028 0.886 1.465 2.654 sum 4.720 -3.177 3.205 6.530 Atomic orbital electron populations 1.70148 1.06450 1.29070 1.32897 1.25800 0.95813 1.00888 0.94819 0.85621 0.79693 0.79285 0.78791 1.18350 1.19529 1.19562 1.20221 0.92273 0.80553 1.52086 0.86065 1.46725 1.06863 1.04560 1.33692 1.22200 0.99129 0.84902 1.19943 1.21356 0.90166 0.96148 1.18356 1.19695 0.80215 0.87126 0.98047 0.87839 1.86520 1.24613 1.78472 1.46727 1.22421 1.02312 0.87107 0.97206 1.58671 1.18536 1.09185 1.51462 1.73969 1.25033 1.00861 1.18286 1.82546 0.88856 1.06673 1.28794 0.90671 0.82524 0.78506 0.95731 0.89512 0.84596 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.49 11.89 55.50 0.66 -19.83 15 2 C 0.05 1.15 5.50 -17.51 -0.10 1.06 15 3 Si 0.94 18.00 29.55 -169.99 -5.02 12.98 15 4 H -0.26 -4.71 7.11 56.52 0.40 -4.30 15 5 H -0.27 -5.12 7.11 56.52 0.40 -4.72 15 6 H -0.27 -5.10 7.11 56.52 0.40 -4.70 15 7 C -0.31 -8.10 10.31 -14.69 -0.15 -8.25 15 8 H 0.12 2.77 7.83 -52.49 -0.41 2.36 15 9 N -0.15 -4.03 3.78 -11.48 -0.04 -4.07 15 10 C -0.11 -2.56 10.73 -16.57 -0.18 -2.73 15 11 C -0.11 -2.62 6.33 -83.06 -0.53 -3.15 15 12 C 0.21 3.93 3.79 -27.88 -0.11 3.82 15 13 H 0.10 2.02 8.14 -51.93 -0.42 1.60 15 14 O -0.56 -9.16 12.04 -35.23 -0.42 -9.58 15 15 C 0.04 0.67 6.45 -3.82 -0.02 0.65 15 16 N -0.85 -11.57 9.62 -10.37 -0.10 -11.67 15 17 N -0.32 -8.67 12.29 33.16 0.41 -8.26 15 18 N -0.09 -2.70 11.73 60.35 0.71 -1.99 15 19 H 0.28 6.86 8.31 -40.82 -0.34 6.52 15 20 H 0.16 3.15 7.79 -52.49 -0.41 2.75 15 21 H 0.37 4.90 8.77 45.56 0.40 5.30 15 22 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 15 23 H 0.09 1.57 8.14 -51.93 -0.42 1.15 15 24 H 0.34 4.26 8.38 -39.29 -0.33 3.93 15 25 H 0.34 3.81 9.08 -39.29 -0.36 3.45 15 LS Contribution 229.92 15.07 3.46 3.46 Total: -1.00 -31.32 229.92 -2.94 -34.26 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -1.51 Total: 13.32 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -1.08 Total: -8.60 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 1.63 Total: -45.83 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -0.42 Total: -9.58 kcal Atomic # 14 Polarization: 18.00 SS G_CDS: -5.02 Total: 12.98 kcal Total LS contribution 3.46 Total: 3.46 kcal Total: -31.32 -2.94 -34.26 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259780516.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.970 kcal (2) G-P(sol) polarization free energy of solvation -31.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds