Wall clock time and date at job start Mon Mar 30 2020 02:11:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30318 * 125.97508 * 2 1 4 4 N 1.39877 * 109.23210 * 179.97438 * 3 2 1 5 5 C 1.46496 * 125.67900 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47294 * 304.97718 * 5 4 3 7 7 F 1.39890 * 109.47644 * 180.02562 * 6 5 4 8 8 C 1.34508 * 108.64716 * 359.76085 * 4 3 2 9 9 C 1.39278 * 107.18535 * 0.37416 * 8 4 3 10 10 C 1.41595 * 126.55608 * 179.89215 * 9 8 4 11 11 H 1.08009 * 120.00125 * 179.40808 * 10 9 8 12 12 C 1.39692 * 120.00234 * 359.68536 * 10 9 8 13 13 N 1.31030 * 119.99937 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00325 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47057 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 120.00050 * 14 12 10 17 17 H 1.48508 * 109.47034 * 240.00042 * 14 12 10 18 18 H 1.08998 * 109.47145 * 270.03912 * 1 2 3 19 19 H 1.08991 * 109.46930 * 30.04226 * 1 2 3 20 20 H 1.09003 * 109.46908 * 150.04528 * 1 2 3 21 21 H 1.09004 * 109.47102 * 64.97886 * 5 4 3 22 22 H 1.08999 * 109.47496 * 184.97382 * 5 4 3 23 23 H 1.09009 * 109.46761 * 300.00300 * 6 5 4 24 24 H 1.08999 * 109.47123 * 59.99436 * 6 5 4 25 25 H 1.08000 * 126.40869 * 180.26641 * 8 4 3 26 26 H 0.96996 * 119.99923 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6120 0.6517 0.0006 5 6 4.7731 1.5451 0.0013 6 6 4.6736 2.5116 -1.1805 7 9 5.7825 3.3644 -1.1802 8 6 3.6567 -0.6927 0.0063 9 6 2.3406 -1.1482 0.0006 10 6 1.9156 -2.4989 0.0015 11 1 0.8613 -2.7333 0.0064 12 6 2.8599 -3.5282 0.0020 13 7 4.1390 -3.2439 0.0021 14 14 2.2993 -5.3101 0.0025 15 1 0.8152 -5.3621 0.0029 16 1 2.8187 -5.9928 -1.2097 17 1 2.8183 -5.9920 1.2154 18 1 -0.3633 0.0007 1.0276 19 1 -0.3633 0.8895 -0.5145 20 1 -0.3633 -0.8904 -0.5131 21 1 4.7955 2.1110 0.9327 22 1 5.6854 0.9553 -0.0874 23 1 4.6511 1.9456 -2.1119 24 1 3.7612 3.1014 -1.0918 25 1 4.5467 -1.3044 0.0122 26 1 4.7947 -3.9587 0.0028 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259796734.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:06 Heat of formation + Delta-G solvation = 7.344191 kcal Electronic energy + Delta-G solvation = -12244.946927 eV Core-core repulsion = 9853.196689 eV Total energy + Delta-G solvation = -2391.750238 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -47.45030 -39.36905 -33.90868 -32.91870 -29.88391 -28.60221 -26.51310 -24.60223 -22.21972 -19.77863 -18.16051 -16.90920 -16.02036 -15.89603 -15.06246 -14.64477 -14.04625 -13.51351 -12.84679 -12.64824 -12.37565 -11.87630 -11.63998 -11.38102 -11.18898 -10.87620 -10.78458 -10.55091 -10.37440 -9.69082 -9.23786 -8.90052 -7.77202 -7.09303 -6.40462 -3.99442 3.10093 3.21678 3.26588 3.34821 3.71560 4.18342 4.24695 4.85812 5.06859 5.25305 5.54766 5.55438 5.82235 6.13538 6.19270 6.22285 6.50296 6.67719 6.91027 7.29771 7.55534 7.82255 7.92411 8.39319 8.80763 9.08383 9.17192 9.39624 10.61046 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.043726 B = 0.009937 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.203354 B = 2817.013267 C = 3372.512907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 C 0.015 3.985 3 N -0.340 5.340 4 N -0.395 5.395 5 C 0.125 3.875 6 C 0.051 3.949 7 F -0.220 7.220 8 C -0.051 4.051 9 C -0.043 4.043 10 C -0.422 4.422 11 H 0.071 0.929 12 C 0.054 3.946 13 N -0.848 5.848 14 Si 0.914 3.086 15 H -0.266 1.266 16 H -0.280 1.280 17 H -0.280 1.280 18 H 0.057 0.943 19 H 0.051 0.949 20 H 0.068 0.932 21 H 0.073 0.927 22 H 0.094 0.906 23 H 0.077 0.923 24 H 0.084 0.916 25 H 0.193 0.807 26 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.218 4.163 -0.924 4.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.151 4.151 3 N -0.164 5.164 4 N -0.184 5.184 5 C 0.001 3.999 6 C -0.005 4.005 7 F -0.202 7.202 8 C -0.192 4.192 9 C -0.052 4.052 10 C -0.457 4.457 11 H 0.089 0.911 12 C -0.154 4.154 13 N -0.481 5.481 14 Si 0.741 3.259 15 H -0.191 1.191 16 H -0.206 1.206 17 H -0.206 1.206 18 H 0.075 0.925 19 H 0.070 0.930 20 H 0.087 0.913 21 H 0.091 0.909 22 H 0.112 0.888 23 H 0.095 0.905 24 H 0.103 0.897 25 H 0.209 0.791 26 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.571 5.323 -0.924 5.433 hybrid contribution 0.050 -1.759 0.034 1.761 sum 0.621 3.564 -0.890 3.725 Atomic orbital electron populations 1.19841 0.88791 1.01261 1.01007 1.22313 0.95418 0.91883 1.05503 1.76254 0.87408 1.24458 1.28294 1.47456 1.02852 1.05303 1.62742 1.21635 0.87614 0.92528 0.98152 1.22312 0.86279 0.91459 1.00412 1.92725 1.56588 1.72941 1.97900 1.23966 1.01448 0.80689 1.13126 1.18015 0.89680 0.92915 1.04617 1.18797 0.93563 0.88961 1.44359 0.91109 1.25545 0.94526 1.00702 0.94592 1.69435 1.01200 1.33303 1.44117 0.86157 0.79448 0.82424 0.77918 1.19057 1.20574 1.20585 0.92454 0.93048 0.91332 0.90912 0.88810 0.90500 0.89736 0.79099 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.99 10.24 36.01 0.37 -0.62 15 2 C 0.02 0.37 7.28 -81.84 -0.60 -0.23 15 3 N -0.34 -8.17 12.30 34.00 0.42 -7.75 15 4 N -0.40 -9.12 3.65 -60.40 -0.22 -9.34 15 5 C 0.13 2.23 6.94 -4.04 -0.03 2.20 15 6 C 0.05 0.82 7.73 37.16 0.29 1.11 15 7 F -0.22 -3.47 17.36 2.25 0.04 -3.43 15 8 C -0.05 -1.34 10.41 -15.99 -0.17 -1.50 15 9 C -0.04 -1.16 5.94 -106.84 -0.63 -1.80 15 10 C -0.42 -11.43 9.15 -37.76 -0.35 -11.78 15 11 H 0.07 1.83 7.37 -52.48 -0.39 1.44 15 12 C 0.05 1.42 5.49 -17.35 -0.10 1.32 15 13 N -0.85 -22.43 10.33 55.54 0.57 -21.85 15 14 Si 0.91 19.75 29.56 -169.99 -5.02 14.72 15 15 H -0.27 -5.65 7.11 56.52 0.40 -5.25 15 16 H -0.28 -5.99 7.11 56.52 0.40 -5.59 15 17 H -0.28 -6.00 7.11 56.52 0.40 -5.60 15 18 H 0.06 1.04 8.14 -51.93 -0.42 0.62 15 19 H 0.05 0.90 8.14 -51.93 -0.42 0.48 15 20 H 0.07 1.30 7.62 -51.93 -0.40 0.91 15 21 H 0.07 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.09 1.53 8.06 -51.93 -0.42 1.11 15 23 H 0.08 1.22 8.14 -51.92 -0.42 0.80 15 24 H 0.08 1.36 8.14 -51.93 -0.42 0.94 15 25 H 0.19 5.09 5.75 -52.49 -0.30 4.79 15 26 H 0.27 6.60 8.30 -40.82 -0.34 6.26 15 LS Contribution 235.51 15.07 3.55 3.55 Total: -1.00 -29.07 235.51 -4.63 -33.70 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -2.75 Total: 1.69 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -1.21 Total: -11.29 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: 0.77 Total: -38.95 kcal Atomic # 9 Polarization: -3.47 SS G_CDS: 0.04 Total: -3.43 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.02 Total: 14.72 kcal Total LS contribution 3.55 Total: 3.55 kcal Total: -29.07 -4.63 -33.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796734.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.044 kcal (2) G-P(sol) polarization free energy of solvation -29.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds