Wall clock time and date at job start Mon Mar 30 2020 02:11:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50704 * 1
3 3 N 1.30318 * 125.97508 * 2 1
4 4 N 1.39877 * 109.23210 * 179.97438 * 3 2 1
5 5 C 1.46496 * 125.67900 * 180.02562 * 4 3 2
6 6 C 1.53000 * 109.47294 * 304.97718 * 5 4 3
7 7 F 1.39890 * 109.47644 * 180.02562 * 6 5 4
8 8 C 1.34508 * 108.64716 * 359.76085 * 4 3 2
9 9 C 1.39278 * 107.18535 * 0.37416 * 8 4 3
10 10 C 1.41595 * 126.55608 * 179.89215 * 9 8 4
11 11 H 1.08009 * 120.00125 * 179.40808 * 10 9 8
12 12 C 1.39692 * 120.00234 * 359.68536 * 10 9 8
13 13 N 1.31030 * 119.99937 * 0.02562 * 12 10 9
14 14 Si 1.86800 * 120.00325 * 180.02562 * 12 10 9
15 15 H 1.48501 * 109.47057 * 359.97438 * 14 12 10
16 16 H 1.48500 * 109.47389 * 120.00050 * 14 12 10
17 17 H 1.48508 * 109.47034 * 240.00042 * 14 12 10
18 18 H 1.08998 * 109.47145 * 270.03912 * 1 2 3
19 19 H 1.08991 * 109.46930 * 30.04226 * 1 2 3
20 20 H 1.09003 * 109.46908 * 150.04528 * 1 2 3
21 21 H 1.09004 * 109.47102 * 64.97886 * 5 4 3
22 22 H 1.08999 * 109.47496 * 184.97382 * 5 4 3
23 23 H 1.09009 * 109.46761 * 300.00300 * 6 5 4
24 24 H 1.08999 * 109.47123 * 59.99436 * 6 5 4
25 25 H 1.08000 * 126.40869 * 180.26641 * 8 4 3
26 26 H 0.96996 * 119.99923 * 179.97438 * 13 12 10
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 7 2.2726 1.0546 0.0000
4 7 3.6120 0.6517 0.0006
5 6 4.7731 1.5451 0.0013
6 6 4.6736 2.5116 -1.1805
7 9 5.7825 3.3644 -1.1802
8 6 3.6567 -0.6927 0.0063
9 6 2.3406 -1.1482 0.0006
10 6 1.9156 -2.4989 0.0015
11 1 0.8613 -2.7333 0.0064
12 6 2.8599 -3.5282 0.0020
13 7 4.1390 -3.2439 0.0021
14 14 2.2993 -5.3101 0.0025
15 1 0.8152 -5.3621 0.0029
16 1 2.8187 -5.9928 -1.2097
17 1 2.8183 -5.9920 1.2154
18 1 -0.3633 0.0007 1.0276
19 1 -0.3633 0.8895 -0.5145
20 1 -0.3633 -0.8904 -0.5131
21 1 4.7955 2.1110 0.9327
22 1 5.6854 0.9553 -0.0874
23 1 4.6511 1.9456 -2.1119
24 1 3.7612 3.1014 -1.0918
25 1 4.5467 -1.3044 0.0122
26 1 4.7947 -3.9587 0.0028
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000259796734.mol2 26
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:11:05
Heat of formation + Delta-G solvation = -9.823964 kcal
Electronic energy + Delta-G solvation = -12245.691394 eV
Core-core repulsion = 9853.196689 eV
Total energy + Delta-G solvation = -2392.494705 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 198.086 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-48.74631 -41.21955 -35.69230 -34.72015 -31.46217 -30.54427 -28.18613 -26.44500
-23.74330 -21.68008 -19.96641 -18.78897 -17.65920 -17.27043 -16.62950 -16.20331
-15.67368 -15.14590 -14.54867 -14.39112 -13.99883 -13.53944 -13.28460 -13.12257
-12.89689 -12.58424 -12.30777 -12.12326 -11.90910 -11.59245 -11.14013 -10.78766
-9.58303 -9.06675 -8.33785 -6.00187 1.38043 1.46696 1.49647 1.60221
2.04219 2.32086 2.38384 3.43246 3.55884 3.72725 3.93473 4.14167
4.38434 4.54497 4.61854 4.82446 4.97793 5.05587 5.15500 5.36917
5.64939 5.87982 6.04529 6.47700 6.88756 7.13010 7.18108 7.47884
8.68551
Molecular weight = 198.09amu
Principal moments of inertia in cm(-1)
A = 0.043726 B = 0.009937 C = 0.008300
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 640.203354 B = 2817.013267 C = 3372.512907
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.046 4.046
2 C 0.000 4.000
3 N -0.340 5.340
4 N -0.394 5.394
5 C 0.115 3.885
6 C 0.067 3.933
7 F -0.216 7.216
8 C -0.065 4.065
9 C -0.082 4.082
10 C -0.452 4.452
11 H 0.073 0.927
12 C 0.010 3.990
13 N -0.872 5.872
14 Si 0.985 3.015
15 H -0.260 1.260
16 H -0.275 1.275
17 H -0.276 1.276
18 H 0.071 0.929
19 H 0.072 0.928
20 H 0.071 0.929
21 H 0.087 0.913
22 H 0.106 0.894
23 H 0.077 0.923
24 H 0.086 0.914
25 H 0.183 0.817
26 H 0.275 0.725
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.182 4.101 -0.984 4.222
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.105 4.105
2 C -0.166 4.166
3 N -0.165 5.165
4 N -0.182 5.182
5 C -0.007 4.007
6 C 0.011 3.989
7 F -0.197 7.197
8 C -0.207 4.207
9 C -0.092 4.092
10 C -0.487 4.487
11 H 0.091 0.909
12 C -0.196 4.196
13 N -0.506 5.506
14 Si 0.809 3.191
15 H -0.184 1.184
16 H -0.200 1.200
17 H -0.201 1.201
18 H 0.090 0.910
19 H 0.091 0.909
20 H 0.089 0.911
21 H 0.106 0.894
22 H 0.125 0.875
23 H 0.096 0.904
24 H 0.104 0.896
25 H 0.199 0.801
26 H 0.086 0.914
Dipole moment (debyes) X Y Z Total
from point charges 0.186 5.300 -0.986 5.394
hybrid contribution 0.245 -1.654 0.065 1.673
sum 0.431 3.646 -0.921 3.785
Atomic orbital electron populations
1.19929 0.85840 1.02451 1.02286 1.22947 0.97537 0.91011 1.05126
1.76192 0.87900 1.24455 1.27964 1.47726 1.03665 1.05030 1.61825
1.21980 0.86374 0.92615 0.99778 1.22074 0.86378 0.91002 0.99461
1.92739 1.56426 1.72695 1.97828 1.23859 1.01051 0.82095 1.13723
1.18491 0.90856 0.94029 1.05787 1.19083 0.94065 0.89744 1.45808
0.90866 1.26416 0.94517 1.04855 0.93800 1.69518 1.02111 1.34726
1.44208 0.85070 0.79216 0.76872 0.77962 1.18375 1.20041 1.20113
0.91029 0.90887 0.91060 0.89436 0.87542 0.90431 0.89597 0.80087
0.91436
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.05 -1.76 10.24 71.24 0.73 -1.03 15
2 C 0.00 0.01 7.28 43.69 0.32 0.33 15
3 N -0.34 -16.08 12.30 -46.35 -0.57 -16.65 15
4 N -0.39 -17.99 3.65 -345.02 -1.26 -19.25 15
5 C 0.12 3.96 6.94 86.38 0.60 4.56 15
6 C 0.07 2.02 7.73 71.98 0.56 2.58 15
7 F -0.22 -6.35 17.36 44.97 0.78 -5.57 15
8 C -0.07 -3.44 10.41 84.53 0.88 -2.56 15
9 C -0.08 -4.49 5.94 -21.30 -0.13 -4.62 15
10 C -0.45 -24.67 9.15 23.45 0.21 -24.45 15
11 H 0.07 3.79 7.37 -2.91 -0.02 3.77 15
12 C 0.01 0.50 5.49 85.16 0.47 0.96 15
13 N -0.87 -46.46 10.33 21.79 0.23 -46.24 15
14 Si 0.99 40.17 29.56 68.60 2.03 42.20 15
15 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15
16 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15
17 H -0.28 -10.96 7.11 99.48 0.71 -10.25 15
18 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15
19 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15
20 H 0.07 2.63 7.62 -2.39 -0.02 2.61 15
21 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15
22 H 0.11 3.36 8.06 -2.39 -0.02 3.34 15
23 H 0.08 2.36 8.14 -2.38 -0.02 2.34 15
24 H 0.09 2.61 8.14 -2.39 -0.02 2.59 15
25 H 0.18 9.86 5.75 -2.91 -0.02 9.84 15
26 H 0.28 13.49 8.30 -92.71 -0.77 12.72 15
Total: -1.00 -60.91 235.51 6.02 -54.88
By element:
Atomic # 1 Polarization: 13.67 SS G_CDS: 1.18 Total: 14.84 kcal
Atomic # 6 Polarization: -27.86 SS G_CDS: 3.64 Total: -24.22 kcal
Atomic # 7 Polarization: -80.54 SS G_CDS: -1.61 Total: -82.14 kcal
Atomic # 9 Polarization: -6.35 SS G_CDS: 0.78 Total: -5.57 kcal
Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal
Total: -60.91 6.02 -54.88 kcal
The number of atoms in the molecule is 26
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259796734.mol2 26
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 45.061 kcal
(2) G-P(sol) polarization free energy of solvation -60.906 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.845 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.885 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.824 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds