Wall clock time and date at job start Mon Mar 30 2020 02:11:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30318 * 125.97508 * 2 1 4 4 N 1.39877 * 109.23210 * 179.97438 * 3 2 1 5 5 C 1.46496 * 125.67900 * 180.02562 * 4 3 2 6 6 C 1.53000 * 109.47294 * 304.97718 * 5 4 3 7 7 F 1.39890 * 109.47644 * 180.02562 * 6 5 4 8 8 C 1.34508 * 108.64716 * 359.76085 * 4 3 2 9 9 C 1.39278 * 107.18535 * 0.37416 * 8 4 3 10 10 C 1.41595 * 126.55608 * 179.89215 * 9 8 4 11 11 H 1.08009 * 120.00125 * 179.40808 * 10 9 8 12 12 C 1.39692 * 120.00234 * 359.68536 * 10 9 8 13 13 N 1.31030 * 119.99937 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00325 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47057 * 359.97438 * 14 12 10 16 16 H 1.48500 * 109.47389 * 120.00050 * 14 12 10 17 17 H 1.48508 * 109.47034 * 240.00042 * 14 12 10 18 18 H 1.08998 * 109.47145 * 270.03912 * 1 2 3 19 19 H 1.08991 * 109.46930 * 30.04226 * 1 2 3 20 20 H 1.09003 * 109.46908 * 150.04528 * 1 2 3 21 21 H 1.09004 * 109.47102 * 64.97886 * 5 4 3 22 22 H 1.08999 * 109.47496 * 184.97382 * 5 4 3 23 23 H 1.09009 * 109.46761 * 300.00300 * 6 5 4 24 24 H 1.08999 * 109.47123 * 59.99436 * 6 5 4 25 25 H 1.08000 * 126.40869 * 180.26641 * 8 4 3 26 26 H 0.96996 * 119.99923 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2726 1.0546 0.0000 4 7 3.6120 0.6517 0.0006 5 6 4.7731 1.5451 0.0013 6 6 4.6736 2.5116 -1.1805 7 9 5.7825 3.3644 -1.1802 8 6 3.6567 -0.6927 0.0063 9 6 2.3406 -1.1482 0.0006 10 6 1.9156 -2.4989 0.0015 11 1 0.8613 -2.7333 0.0064 12 6 2.8599 -3.5282 0.0020 13 7 4.1390 -3.2439 0.0021 14 14 2.2993 -5.3101 0.0025 15 1 0.8152 -5.3621 0.0029 16 1 2.8187 -5.9928 -1.2097 17 1 2.8183 -5.9920 1.2154 18 1 -0.3633 0.0007 1.0276 19 1 -0.3633 0.8895 -0.5145 20 1 -0.3633 -0.8904 -0.5131 21 1 4.7955 2.1110 0.9327 22 1 5.6854 0.9553 -0.0874 23 1 4.6511 1.9456 -2.1119 24 1 3.7612 3.1014 -1.0918 25 1 4.5467 -1.3044 0.0122 26 1 4.7947 -3.9587 0.0028 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259796734.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:05 Heat of formation + Delta-G solvation = -9.823964 kcal Electronic energy + Delta-G solvation = -12245.691394 eV Core-core repulsion = 9853.196689 eV Total energy + Delta-G solvation = -2392.494705 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -48.74631 -41.21955 -35.69230 -34.72015 -31.46217 -30.54427 -28.18613 -26.44500 -23.74330 -21.68008 -19.96641 -18.78897 -17.65920 -17.27043 -16.62950 -16.20331 -15.67368 -15.14590 -14.54867 -14.39112 -13.99883 -13.53944 -13.28460 -13.12257 -12.89689 -12.58424 -12.30777 -12.12326 -11.90910 -11.59245 -11.14013 -10.78766 -9.58303 -9.06675 -8.33785 -6.00187 1.38043 1.46696 1.49647 1.60221 2.04219 2.32086 2.38384 3.43246 3.55884 3.72725 3.93473 4.14167 4.38434 4.54497 4.61854 4.82446 4.97793 5.05587 5.15500 5.36917 5.64939 5.87982 6.04529 6.47700 6.88756 7.13010 7.18108 7.47884 8.68551 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.043726 B = 0.009937 C = 0.008300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 640.203354 B = 2817.013267 C = 3372.512907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 C 0.000 4.000 3 N -0.340 5.340 4 N -0.394 5.394 5 C 0.115 3.885 6 C 0.067 3.933 7 F -0.216 7.216 8 C -0.065 4.065 9 C -0.082 4.082 10 C -0.452 4.452 11 H 0.073 0.927 12 C 0.010 3.990 13 N -0.872 5.872 14 Si 0.985 3.015 15 H -0.260 1.260 16 H -0.275 1.275 17 H -0.276 1.276 18 H 0.071 0.929 19 H 0.072 0.928 20 H 0.071 0.929 21 H 0.087 0.913 22 H 0.106 0.894 23 H 0.077 0.923 24 H 0.086 0.914 25 H 0.183 0.817 26 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.182 4.101 -0.984 4.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.166 4.166 3 N -0.165 5.165 4 N -0.182 5.182 5 C -0.007 4.007 6 C 0.011 3.989 7 F -0.197 7.197 8 C -0.207 4.207 9 C -0.092 4.092 10 C -0.487 4.487 11 H 0.091 0.909 12 C -0.196 4.196 13 N -0.506 5.506 14 Si 0.809 3.191 15 H -0.184 1.184 16 H -0.200 1.200 17 H -0.201 1.201 18 H 0.090 0.910 19 H 0.091 0.909 20 H 0.089 0.911 21 H 0.106 0.894 22 H 0.125 0.875 23 H 0.096 0.904 24 H 0.104 0.896 25 H 0.199 0.801 26 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 0.186 5.300 -0.986 5.394 hybrid contribution 0.245 -1.654 0.065 1.673 sum 0.431 3.646 -0.921 3.785 Atomic orbital electron populations 1.19929 0.85840 1.02451 1.02286 1.22947 0.97537 0.91011 1.05126 1.76192 0.87900 1.24455 1.27964 1.47726 1.03665 1.05030 1.61825 1.21980 0.86374 0.92615 0.99778 1.22074 0.86378 0.91002 0.99461 1.92739 1.56426 1.72695 1.97828 1.23859 1.01051 0.82095 1.13723 1.18491 0.90856 0.94029 1.05787 1.19083 0.94065 0.89744 1.45808 0.90866 1.26416 0.94517 1.04855 0.93800 1.69518 1.02111 1.34726 1.44208 0.85070 0.79216 0.76872 0.77962 1.18375 1.20041 1.20113 0.91029 0.90887 0.91060 0.89436 0.87542 0.90431 0.89597 0.80087 0.91436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -1.76 10.24 71.24 0.73 -1.03 15 2 C 0.00 0.01 7.28 43.69 0.32 0.33 15 3 N -0.34 -16.08 12.30 -46.35 -0.57 -16.65 15 4 N -0.39 -17.99 3.65 -345.02 -1.26 -19.25 15 5 C 0.12 3.96 6.94 86.38 0.60 4.56 15 6 C 0.07 2.02 7.73 71.98 0.56 2.58 15 7 F -0.22 -6.35 17.36 44.97 0.78 -5.57 15 8 C -0.07 -3.44 10.41 84.53 0.88 -2.56 15 9 C -0.08 -4.49 5.94 -21.30 -0.13 -4.62 15 10 C -0.45 -24.67 9.15 23.45 0.21 -24.45 15 11 H 0.07 3.79 7.37 -2.91 -0.02 3.77 15 12 C 0.01 0.50 5.49 85.16 0.47 0.96 15 13 N -0.87 -46.46 10.33 21.79 0.23 -46.24 15 14 Si 0.99 40.17 29.56 68.60 2.03 42.20 15 15 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 16 H -0.27 -10.91 7.11 99.48 0.71 -10.20 15 17 H -0.28 -10.96 7.11 99.48 0.71 -10.25 15 18 H 0.07 2.48 8.14 -2.39 -0.02 2.46 15 19 H 0.07 2.41 8.14 -2.39 -0.02 2.39 15 20 H 0.07 2.63 7.62 -2.39 -0.02 2.61 15 21 H 0.09 2.76 8.14 -2.39 -0.02 2.74 15 22 H 0.11 3.36 8.06 -2.39 -0.02 3.34 15 23 H 0.08 2.36 8.14 -2.38 -0.02 2.34 15 24 H 0.09 2.61 8.14 -2.39 -0.02 2.59 15 25 H 0.18 9.86 5.75 -2.91 -0.02 9.84 15 26 H 0.28 13.49 8.30 -92.71 -0.77 12.72 15 Total: -1.00 -60.91 235.51 6.02 -54.88 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: 1.18 Total: 14.84 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 3.64 Total: -24.22 kcal Atomic # 7 Polarization: -80.54 SS G_CDS: -1.61 Total: -82.14 kcal Atomic # 9 Polarization: -6.35 SS G_CDS: 0.78 Total: -5.57 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -60.91 6.02 -54.88 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259796734.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.061 kcal (2) G-P(sol) polarization free energy of solvation -60.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds