Wall clock time and date at job start Mon Mar 30 2020 02:05:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86798 * 120.00321 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00244 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99829 * 3 2 1 7 7 C 1.37885 * 119.99913 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99806 * 179.97438 * 7 2 1 9 9 C 1.50697 * 119.99686 * 359.72095 * 7 2 1 10 10 H 1.09000 * 109.19450 * 300.67578 * 9 7 2 11 11 C 1.52476 * 109.19549 * 60.00305 * 9 7 2 12 12 C 1.53175 * 110.31544 * 194.28007 * 11 9 7 13 13 S 1.82032 * 108.47078 * 294.15044 * 12 11 9 14 14 C 1.81834 * 101.58594 * 50.41525 * 13 12 11 15 15 C 1.52626 * 117.78773 * 166.49759 * 14 13 12 16 16 C 1.52628 * 117.77200 * 97.43835 * 14 13 12 17 17 C 1.52835 * 109.19004 * 181.39526 * 9 7 2 18 18 H 0.97000 * 119.99651 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.32708 * 314.54232 * 11 9 7 20 20 H 1.09001 * 109.32761 * 74.02405 * 11 9 7 21 21 H 1.08998 * 109.63702 * 53.84808 * 12 11 9 22 22 H 1.09004 * 109.63322 * 174.25483 * 12 11 9 23 23 H 1.09001 * 117.50409 * 359.69769 * 15 14 13 24 24 H 1.08996 * 117.51049 * 144.76659 * 15 14 13 25 25 H 1.09000 * 117.50971 * 215.25490 * 16 14 13 26 26 H 1.09001 * 117.50559 * 0.29054 * 16 14 13 27 27 H 1.08997 * 109.50495 * 293.18265 * 17 9 7 28 28 H 1.09006 * 109.49673 * 53.28953 * 17 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1030 1.6963 1.2126 7 6 2.0046 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4991 0.0052 10 1 0.6207 -2.5451 0.8934 11 6 0.3716 -2.5758 -1.2380 12 6 -0.6577 -3.7008 -1.0929 13 16 0.2276 -5.2909 -1.0542 14 6 1.4909 -4.9747 0.2148 15 6 2.2527 -6.1730 0.7745 16 6 1.2086 -5.4570 1.6351 17 6 2.2496 -3.6557 0.0385 18 1 -0.4850 0.8401 0.0004 19 1 -0.1476 -1.6267 -1.3717 20 1 0.9961 -2.7685 -2.1103 21 1 -1.2156 -3.5695 -0.1658 22 1 -1.3440 -3.6808 -1.9394 23 1 1.9954 -7.1588 0.3870 24 1 3.3020 -6.0275 1.0309 25 1 1.5712 -4.8404 2.4576 26 1 0.2642 -5.9711 1.8138 27 1 2.8094 -3.6802 -0.8964 28 1 2.9383 -3.5179 0.8721 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259806531.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:04 Heat of formation + Delta-G solvation = -5.904338 kcal Electronic energy + Delta-G solvation = -10953.714975 eV Core-core repulsion = 9095.310662 eV Total energy + Delta-G solvation = -1858.404313 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.07053 -36.60354 -33.74399 -30.71090 -27.57100 -24.72070 -23.43975 -22.20580 -20.91243 -18.41649 -17.58794 -16.54298 -16.05551 -15.44963 -14.84652 -14.55649 -14.20465 -13.52026 -13.40062 -13.27097 -12.79331 -12.54994 -12.40074 -12.07966 -11.92464 -11.63262 -11.35888 -11.10722 -10.67538 -10.61254 -10.18336 -8.56111 -8.09219 -6.26280 0.96876 1.41745 1.42303 1.50045 1.61134 2.41610 2.81843 3.15120 3.78702 3.98277 4.04059 4.17949 4.33404 4.61820 4.71305 4.76056 4.78565 4.90562 4.97290 5.14638 5.22069 5.24336 5.42723 5.57584 5.91177 6.05618 6.34253 6.84630 7.42157 8.92356 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.052777 B = 0.011297 C = 0.010038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 530.406255 B = 2477.845858 C = 2788.759016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.014 3.986 3 Si 0.953 3.047 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.535 4.535 8 H 0.053 0.947 9 C 0.046 3.954 10 H -0.004 1.004 11 C -0.105 4.105 12 C -0.064 4.064 13 S -0.245 6.245 14 C -0.117 4.117 15 C -0.123 4.123 16 C -0.154 4.154 17 C -0.061 4.061 18 H 0.262 0.738 19 H 0.076 0.924 20 H 0.037 0.963 21 H 0.066 0.934 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.117 0.883 25 H 0.098 0.902 26 H 0.105 0.895 27 H 0.053 0.947 28 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.843 -8.379 0.694 8.607 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.184 4.184 3 Si 0.779 3.221 4 H -0.197 1.197 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.071 0.929 9 C 0.027 3.973 10 H 0.014 0.986 11 C -0.144 4.144 12 C -0.212 4.212 13 S -0.015 6.015 14 C -0.227 4.227 15 C -0.162 4.162 16 C -0.194 4.194 17 C -0.100 4.100 18 H 0.071 0.929 19 H 0.095 0.905 20 H 0.056 0.944 21 H 0.085 0.915 22 H 0.120 0.880 23 H 0.128 0.872 24 H 0.135 0.865 25 H 0.116 0.884 26 H 0.124 0.876 27 H 0.072 0.928 28 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.461 -9.190 0.040 9.306 hybrid contribution 0.340 2.265 0.626 2.374 sum 1.802 -6.926 0.666 7.187 Atomic orbital electron populations 1.69982 1.07099 1.27291 1.50957 1.25718 0.95689 1.02306 0.94736 0.85686 0.78460 0.79157 0.78816 1.19693 1.20931 1.19710 1.21527 0.93073 0.91942 1.50799 0.92904 1.18515 0.93076 0.92435 0.93224 0.98612 1.21596 0.96548 0.97628 0.98673 1.23464 0.99634 0.93762 1.04385 1.85839 1.38670 1.22910 1.54101 1.23490 1.02432 0.99891 0.96874 1.23020 0.98143 0.94671 1.00359 1.23248 1.01211 1.02837 0.92150 1.21220 0.97112 0.90938 1.00703 0.92912 0.90536 0.94432 0.91527 0.88047 0.87207 0.86531 0.88385 0.87648 0.92845 0.92080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.93 11.29 21.45 0.24 -51.69 15 2 C 0.01 0.78 5.23 84.66 0.44 1.23 15 3 Si 0.95 43.09 29.54 68.60 2.03 45.11 15 4 H -0.27 -11.99 7.11 99.48 0.71 -11.28 15 5 H -0.28 -12.60 7.11 99.48 0.71 -11.89 15 6 H -0.27 -11.98 7.11 99.48 0.71 -11.27 15 7 C -0.54 -29.26 8.53 25.60 0.22 -29.04 15 8 H 0.05 2.83 7.73 -2.92 -0.02 2.81 15 9 C 0.05 2.29 1.85 -11.77 -0.02 2.27 15 10 H 0.00 -0.24 8.04 -2.39 -0.02 -0.26 15 11 C -0.11 -5.02 4.86 30.48 0.15 -4.87 15 12 C -0.06 -2.61 6.48 72.04 0.47 -2.15 15 13 S -0.25 -8.99 22.18 -56.49 -1.25 -10.24 15 14 C -0.12 -4.15 2.27 -10.98 -0.02 -4.17 15 15 C -0.12 -3.33 10.06 30.50 0.31 -3.02 15 16 C -0.15 -4.66 10.04 30.50 0.31 -4.36 15 17 C -0.06 -2.53 4.74 30.60 0.15 -2.38 15 18 H 0.26 14.20 8.31 -92.71 -0.77 13.43 15 19 H 0.08 4.11 5.75 -2.39 -0.01 4.10 15 20 H 0.04 1.77 8.06 -2.39 -0.02 1.75 15 21 H 0.07 2.80 8.09 -2.39 -0.02 2.78 15 22 H 0.10 3.69 8.14 -2.38 -0.02 3.67 15 23 H 0.11 2.65 8.14 -2.39 -0.02 2.63 15 24 H 0.12 2.76 8.14 -2.39 -0.02 2.74 15 25 H 0.10 2.94 8.14 -2.39 -0.02 2.92 15 26 H 0.11 2.99 8.14 -2.39 -0.02 2.97 15 27 H 0.05 2.25 8.11 -2.39 -0.02 2.23 15 28 H 0.06 2.46 8.11 -2.38 -0.02 2.44 15 Total: -1.00 -57.65 241.30 4.12 -53.53 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.12 Total: 9.78 kcal Atomic # 6 Polarization: -48.48 SS G_CDS: 1.99 Total: -46.49 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: 0.24 Total: -51.69 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.11 kcal Atomic # 16 Polarization: -8.99 SS G_CDS: -1.25 Total: -10.24 kcal Total: -57.65 4.12 -53.53 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259806531.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.626 kcal (2) G-P(sol) polarization free energy of solvation -57.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds