Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47219 * 2 1 4 4 C 1.50703 * 109.47235 * 239.99632 * 2 1 3 5 5 H 1.08005 * 120.00027 * 245.22015 * 4 2 1 6 6 C 1.37880 * 119.99904 * 65.22353 * 4 2 1 7 7 N 1.31515 * 119.99675 * 9.36338 * 6 4 2 8 8 Si 1.86797 * 120.00121 * 189.36622 * 6 4 2 9 9 H 1.48508 * 109.46921 * 84.99047 * 8 6 4 10 10 H 1.48498 * 109.47331 * 204.99298 * 8 6 4 11 11 H 1.48501 * 109.46850 * 324.99630 * 8 6 4 12 12 C 1.53008 * 109.47169 * 119.99887 * 2 1 3 13 13 H 1.08997 * 115.52867 * 34.44856 * 12 2 1 14 14 C 1.52802 * 117.47351 * 248.89904 * 12 2 1 15 15 C 1.53939 * 117.47380 * 180.02562 * 12 2 1 16 16 C 1.56792 * 123.21253 * 355.58524 * 15 12 2 17 17 S 1.82924 * 82.92333 * 191.83789 * 16 15 12 18 18 C 1.56801 * 123.20536 * 219.52687 * 15 12 2 19 19 H 1.08996 * 109.47226 * 303.73270 * 1 2 3 20 20 H 1.08998 * 109.46758 * 63.73020 * 1 2 3 21 21 H 1.09002 * 109.46939 * 183.73153 * 1 2 3 22 22 H 0.97002 * 119.99877 * 180.02562 * 7 6 4 23 23 H 1.08998 * 117.47401 * 144.87860 * 14 12 2 24 24 H 1.08999 * 117.46636 * 359.97438 * 14 12 2 25 25 H 1.09000 * 114.30141 * 78.32526 * 16 15 12 26 26 H 1.08998 * 114.30904 * 305.35229 * 16 15 12 27 27 H 1.09001 * 114.30543 * 54.65596 * 18 15 12 28 28 H 1.09001 * 114.30300 * 281.67786 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5820 -1.6352 -1.1335 6 6 1.7904 -0.1800 -2.4799 7 7 1.2871 1.0296 -2.5944 8 14 2.1772 -1.1795 -4.0098 9 1 1.0306 -2.0702 -4.3222 10 1 2.4172 -0.2623 -5.1528 11 1 3.3911 -2.0008 -3.7707 12 6 2.0400 -0.7213 1.2493 13 1 1.4319 -1.5597 1.5888 14 6 2.7352 0.1231 2.3164 15 6 3.5644 -0.8279 1.4352 16 6 4.5970 -0.3270 0.3669 17 16 5.7816 -1.2534 1.4083 18 6 4.2742 -2.1116 1.9891 19 1 -0.3633 0.5707 0.8546 20 1 -0.3633 0.4548 -0.9215 21 1 -0.3633 -1.0255 0.0669 22 1 1.1165 1.4027 -3.4734 23 1 2.5846 -0.1596 3.3582 24 1 2.8297 1.1926 2.1284 25 1 4.7512 0.7520 0.3635 26 1 4.4517 -0.7463 -0.6287 27 1 4.0395 -3.0251 1.4427 28 1 4.2124 -2.2269 3.0712 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259815244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = 34.478803 kcal Electronic energy + Delta-G solvation = -10937.533402 eV Core-core repulsion = 9080.880234 eV Total energy + Delta-G solvation = -1856.653168 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.84181 -33.55105 -30.94873 -28.80140 -26.47328 -25.01458 -22.26519 -19.65334 -18.05426 -16.31972 -15.81689 -14.70452 -14.20165 -14.09795 -13.41770 -12.73963 -12.48312 -11.81047 -11.51563 -11.40659 -10.93671 -10.89013 -10.81641 -10.52382 -10.44190 -10.17623 -9.49447 -9.22914 -8.93713 -8.36674 -8.24176 -7.28028 -6.04130 -4.04591 2.26031 2.63201 3.29564 3.36840 3.39171 4.31016 4.45933 4.80918 5.06718 5.28741 5.52227 5.71923 5.78945 5.86841 6.15205 6.20468 6.35960 6.53348 6.61665 6.73034 6.82684 7.15161 7.26265 7.68363 7.92256 7.98106 8.41958 8.97783 9.57582 11.04553 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.035305 B = 0.013273 C = 0.010683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.894360 B = 2109.065994 C = 2620.394364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.068 3.932 3 H 0.035 0.965 4 C -0.505 4.505 5 H 0.056 0.944 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.881 3.119 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C -0.096 4.096 13 H 0.089 0.911 14 C -0.157 4.157 15 C -0.162 4.162 16 C 0.010 3.990 17 S -0.359 6.359 18 C -0.024 4.024 19 H 0.012 0.988 20 H 0.065 0.935 21 H 0.027 0.973 22 H 0.260 0.740 23 H 0.084 0.916 24 H 0.094 0.906 25 H 0.096 0.904 26 H 0.124 0.876 27 H 0.101 0.899 28 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.382 -2.954 6.580 7.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.050 3.950 3 H 0.053 0.947 4 C -0.543 4.543 5 H 0.074 0.926 6 C -0.138 4.138 7 N -0.526 5.526 8 Si 0.709 3.291 9 H -0.207 1.207 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.116 4.116 13 H 0.107 0.893 14 C -0.194 4.194 15 C -0.163 4.163 16 C -0.137 4.137 17 S -0.133 6.133 18 C -0.172 4.172 19 H 0.031 0.969 20 H 0.084 0.916 21 H 0.046 0.954 22 H 0.070 0.930 23 H 0.103 0.897 24 H 0.112 0.888 25 H 0.115 0.885 26 H 0.142 0.858 27 H 0.119 0.881 28 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.716 -2.851 6.673 8.153 hybrid contribution -0.942 -0.530 -1.095 1.539 sum 2.773 -3.381 5.578 7.088 Atomic orbital electron populations 1.21715 0.98867 0.98334 0.99754 1.18344 0.91913 0.95577 0.89206 0.94705 1.21054 1.35033 1.08045 0.90215 0.92552 1.24939 0.95459 0.94574 0.98821 1.69955 1.44868 1.14156 1.23624 0.86774 0.78815 0.80304 0.83163 1.20650 1.21411 1.19896 1.22934 0.90837 0.99903 0.97962 0.89268 1.23192 1.03373 0.97197 0.95606 1.24195 0.95745 0.96153 1.00236 1.24586 0.88199 1.01698 0.99228 1.88001 1.18831 1.50302 1.56157 1.24397 0.91412 0.98461 1.02913 0.96902 0.91639 0.95432 0.93018 0.89735 0.88801 0.88511 0.85818 0.88062 0.88570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 9.05 37.16 0.34 -2.59 15 2 C 0.07 1.58 2.06 -91.77 -0.19 1.39 15 3 H 0.03 0.90 7.85 -51.93 -0.41 0.49 15 4 C -0.51 -12.82 6.43 -34.44 -0.22 -13.04 15 5 H 0.06 1.43 7.23 -52.48 -0.38 1.05 15 6 C 0.06 1.68 5.17 -17.82 -0.09 1.59 15 7 N -0.89 -24.60 12.14 55.43 0.67 -23.92 15 8 Si 0.88 20.66 29.55 -169.99 -5.02 15.63 15 9 H -0.28 -6.58 7.11 56.52 0.40 -6.17 15 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 15 11 H -0.27 -6.36 7.11 56.52 0.40 -5.96 15 12 C -0.10 -1.85 5.05 -90.23 -0.46 -2.31 15 13 H 0.09 1.65 8.11 -51.93 -0.42 1.23 15 14 C -0.16 -2.65 10.09 -26.36 -0.27 -2.92 15 15 C -0.16 -2.92 2.25 -149.45 -0.34 -3.25 15 16 C 0.01 0.19 7.80 39.21 0.31 0.50 15 17 S -0.36 -6.41 24.06 -107.50 -2.59 -9.00 15 18 C -0.02 -0.38 8.98 39.21 0.35 -0.02 15 19 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 15 20 H 0.06 1.65 6.80 -51.93 -0.35 1.29 15 21 H 0.03 0.58 8.14 -51.93 -0.42 0.16 15 22 H 0.26 6.95 8.31 -40.82 -0.34 6.61 15 23 H 0.08 1.24 8.14 -51.93 -0.42 0.82 15 24 H 0.09 1.62 8.04 -51.93 -0.42 1.20 15 25 H 0.10 1.82 8.14 -51.93 -0.42 1.39 15 26 H 0.12 2.59 6.50 -51.93 -0.34 2.26 15 27 H 0.10 1.55 8.14 -51.93 -0.42 1.12 15 28 H 0.10 1.32 8.14 -51.93 -0.42 0.90 15 LS Contribution 245.66 15.07 3.70 3.70 Total: -1.00 -26.62 245.66 -7.79 -34.41 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -3.99 Total: -0.17 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: -0.57 Total: -20.65 kcal Atomic # 7 Polarization: -24.60 SS G_CDS: 0.67 Total: -23.92 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: -6.41 SS G_CDS: -2.59 Total: -9.00 kcal Total LS contribution 3.70 Total: 3.70 kcal Total: -26.62 -7.79 -34.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259815244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.884 kcal (2) G-P(sol) polarization free energy of solvation -26.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds