Wall clock time and date at job start Mon Mar 30 2020 02:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.47219 * 2 1 4 4 C 1.50703 * 109.47235 * 239.99632 * 2 1 3 5 5 H 1.08005 * 120.00027 * 245.22015 * 4 2 1 6 6 C 1.37880 * 119.99904 * 65.22353 * 4 2 1 7 7 N 1.31515 * 119.99675 * 9.36338 * 6 4 2 8 8 Si 1.86797 * 120.00121 * 189.36622 * 6 4 2 9 9 H 1.48508 * 109.46921 * 84.99047 * 8 6 4 10 10 H 1.48498 * 109.47331 * 204.99298 * 8 6 4 11 11 H 1.48501 * 109.46850 * 324.99630 * 8 6 4 12 12 C 1.53008 * 109.47169 * 119.99887 * 2 1 3 13 13 H 1.08997 * 115.52867 * 34.44856 * 12 2 1 14 14 C 1.52802 * 117.47351 * 248.89904 * 12 2 1 15 15 C 1.53939 * 117.47380 * 180.02562 * 12 2 1 16 16 C 1.56792 * 123.21253 * 355.58524 * 15 12 2 17 17 S 1.82924 * 82.92333 * 191.83789 * 16 15 12 18 18 C 1.56801 * 123.20536 * 219.52687 * 15 12 2 19 19 H 1.08996 * 109.47226 * 303.73270 * 1 2 3 20 20 H 1.08998 * 109.46758 * 63.73020 * 1 2 3 21 21 H 1.09002 * 109.46939 * 183.73153 * 1 2 3 22 22 H 0.97002 * 119.99877 * 180.02562 * 7 6 4 23 23 H 1.08998 * 117.47401 * 144.87860 * 14 12 2 24 24 H 1.08999 * 117.46636 * 359.97438 * 14 12 2 25 25 H 1.09000 * 114.30141 * 78.32526 * 16 15 12 26 26 H 1.08998 * 114.30904 * 305.35229 * 16 15 12 27 27 H 1.09001 * 114.30543 * 54.65596 * 18 15 12 28 28 H 1.09001 * 114.30300 * 281.67786 * 18 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.5820 -1.6352 -1.1335 6 6 1.7904 -0.1800 -2.4799 7 7 1.2871 1.0296 -2.5944 8 14 2.1772 -1.1795 -4.0098 9 1 1.0306 -2.0702 -4.3222 10 1 2.4172 -0.2623 -5.1528 11 1 3.3911 -2.0008 -3.7707 12 6 2.0400 -0.7213 1.2493 13 1 1.4319 -1.5597 1.5888 14 6 2.7352 0.1231 2.3164 15 6 3.5644 -0.8279 1.4352 16 6 4.5970 -0.3270 0.3669 17 16 5.7816 -1.2534 1.4083 18 6 4.2742 -2.1116 1.9891 19 1 -0.3633 0.5707 0.8546 20 1 -0.3633 0.4548 -0.9215 21 1 -0.3633 -1.0255 0.0669 22 1 1.1165 1.4027 -3.4734 23 1 2.5846 -0.1596 3.3582 24 1 2.8297 1.1926 2.1284 25 1 4.7512 0.7520 0.3635 26 1 4.4517 -0.7463 -0.6287 27 1 4.0395 -3.0251 1.4427 28 1 4.2124 -2.2269 3.0712 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259815244.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:00 Heat of formation + Delta-G solvation = 21.367164 kcal Electronic energy + Delta-G solvation = -10938.101965 eV Core-core repulsion = 9080.880234 eV Total energy + Delta-G solvation = -1857.221732 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.34238 -35.41726 -32.72824 -30.37744 -27.90698 -26.94626 -23.94504 -21.25227 -19.55671 -18.26664 -17.25983 -16.57403 -15.66802 -15.50429 -15.04261 -14.57191 -13.97875 -13.55346 -13.23170 -12.90253 -12.75540 -12.71130 -12.27036 -12.22382 -12.17260 -11.90222 -11.14635 -10.99307 -10.61469 -10.35796 -9.78517 -8.69472 -8.06596 -6.10843 0.89391 1.21076 1.41647 1.44674 1.51076 2.45677 2.94674 3.25034 3.42946 3.65245 4.14858 4.26690 4.51805 4.57271 4.71135 4.79493 4.90161 4.96460 5.00571 5.07181 5.17501 5.40407 5.47554 5.69432 6.01524 6.08320 6.45146 6.98941 7.53657 9.01556 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.035305 B = 0.013273 C = 0.010683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 792.894360 B = 2109.065994 C = 2620.394364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.067 3.933 3 H 0.002 0.998 4 C -0.501 4.501 5 H 0.054 0.946 6 C 0.016 3.984 7 N -0.920 5.920 8 Si 0.934 3.066 9 H -0.277 1.277 10 H -0.291 1.291 11 H -0.269 1.269 12 C -0.111 4.111 13 H 0.104 0.896 14 C -0.136 4.136 15 C -0.166 4.166 16 C -0.001 4.001 17 S -0.367 6.367 18 C -0.006 4.006 19 H 0.032 0.968 20 H 0.033 0.967 21 H 0.036 0.964 22 H 0.257 0.743 23 H 0.119 0.881 24 H 0.085 0.915 25 H 0.089 0.911 26 H 0.099 0.901 27 H 0.110 0.890 28 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.593 -4.310 8.133 9.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.049 3.951 3 H 0.020 0.980 4 C -0.539 4.539 5 H 0.072 0.928 6 C -0.182 4.182 7 N -0.560 5.560 8 Si 0.761 3.239 9 H -0.203 1.203 10 H -0.217 1.217 11 H -0.194 1.194 12 C -0.131 4.131 13 H 0.122 0.878 14 C -0.173 4.173 15 C -0.167 4.167 16 C -0.148 4.148 17 S -0.141 6.141 18 C -0.153 4.153 19 H 0.051 0.949 20 H 0.052 0.948 21 H 0.055 0.945 22 H 0.066 0.934 23 H 0.137 0.863 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.117 0.883 27 H 0.128 0.872 28 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 3.932 -4.224 8.232 10.053 hybrid contribution -0.987 -0.103 -1.547 1.838 sum 2.945 -4.327 6.685 8.490 Atomic orbital electron populations 1.21594 0.98490 0.98896 0.98998 1.18228 0.92228 0.93999 0.90656 0.98028 1.21328 1.33859 1.07607 0.91134 0.92772 1.25579 0.95921 0.95319 1.01406 1.70070 1.46604 1.15511 1.23819 0.85934 0.78688 0.79003 0.80262 1.20332 1.21748 1.19405 1.22710 0.91979 1.01046 0.97415 0.87755 1.23251 1.00832 0.96501 0.96667 1.24327 0.94485 0.97650 1.00240 1.24398 0.90202 1.01401 0.98845 1.88027 1.19808 1.50536 1.55695 1.24556 0.88518 0.97396 1.04864 0.94851 0.94800 0.94452 0.93366 0.86277 0.89630 0.89197 0.88298 0.87208 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 9.05 71.98 0.65 -4.82 15 2 C 0.07 3.12 2.06 -11.54 -0.02 3.10 15 3 H 0.00 0.08 7.85 -2.39 -0.02 0.06 15 4 C -0.50 -25.49 6.43 25.60 0.16 -25.32 15 5 H 0.05 2.73 7.23 -2.91 -0.02 2.71 15 6 C 0.02 0.86 5.17 84.66 0.44 1.29 15 7 N -0.92 -52.19 12.14 21.45 0.26 -51.93 15 8 Si 0.93 42.73 29.55 68.60 2.03 44.76 15 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 15 10 H -0.29 -13.39 7.11 99.48 0.71 -12.68 15 11 H -0.27 -12.00 7.11 99.48 0.71 -11.29 15 12 C -0.11 -4.06 5.05 -10.54 -0.05 -4.11 15 13 H 0.10 3.52 8.11 -2.39 -0.02 3.50 15 14 C -0.14 -4.20 10.09 30.83 0.31 -3.89 15 15 C -0.17 -5.59 2.25 -48.90 -0.11 -5.70 15 16 C 0.00 -0.03 7.80 73.31 0.57 0.54 15 17 S -0.37 -12.38 24.06 -56.49 -1.36 -13.74 15 18 C -0.01 -0.16 8.98 73.31 0.66 0.50 15 19 H 0.03 1.31 8.14 -2.39 -0.02 1.29 15 20 H 0.03 1.71 6.80 -2.39 -0.02 1.69 15 21 H 0.04 1.55 8.14 -2.39 -0.02 1.53 15 22 H 0.26 14.11 8.31 -92.71 -0.77 13.34 15 23 H 0.12 2.90 8.14 -2.39 -0.02 2.88 15 24 H 0.09 2.81 8.04 -2.39 -0.02 2.79 15 25 H 0.09 3.44 8.14 -2.39 -0.02 3.42 15 26 H 0.10 4.21 6.50 -2.39 -0.02 4.20 15 27 H 0.11 2.94 8.14 -2.39 -0.02 2.92 15 28 H 0.13 2.84 8.14 -2.39 -0.02 2.82 15 Total: -1.00 -56.57 245.66 4.66 -51.91 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: 1.12 Total: 7.41 kcal Atomic # 6 Polarization: -41.02 SS G_CDS: 2.61 Total: -38.41 kcal Atomic # 7 Polarization: -52.19 SS G_CDS: 0.26 Total: -51.93 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Atomic # 16 Polarization: -12.38 SS G_CDS: -1.36 Total: -13.74 kcal Total: -56.57 4.66 -51.91 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259815244.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.278 kcal (2) G-P(sol) polarization free energy of solvation -56.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds