Wall clock time and date at job start Mon Mar 30 2020 01:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09008 * 109.46802 * 2 1 4 4 O 1.42900 * 109.47272 * 240.00562 * 2 1 3 5 5 C 1.50702 * 109.47335 * 120.00026 * 2 1 3 6 6 N 1.31126 * 126.55142 * 254.71079 * 5 2 1 7 7 C 1.34497 * 105.61473 * 180.26610 * 6 5 2 8 8 C 1.50693 * 126.28727 * 180.02562 * 7 6 5 9 9 C 1.50706 * 109.47391 * 269.97159 * 8 7 6 10 10 H 1.07998 * 119.99497 * 0.02562 * 9 8 7 11 11 C 1.37874 * 120.00123 * 180.02562 * 9 8 7 12 12 N 1.31518 * 119.99836 * 180.02562 * 11 9 8 13 13 Si 1.86794 * 120.00047 * 0.02562 * 11 9 8 14 14 H 1.48500 * 109.47160 * 90.00066 * 13 11 9 15 15 H 1.48499 * 109.47385 * 209.99979 * 13 11 9 16 16 H 1.48502 * 109.47342 * 330.00030 * 13 11 9 17 17 N 1.29948 * 107.42228 * 0.02562 * 7 6 5 18 18 O 1.21297 * 110.25402 * 359.97438 * 17 7 6 19 19 H 1.08993 * 109.47785 * 59.99837 * 1 2 3 20 20 H 1.08999 * 109.46971 * 179.97438 * 1 2 3 21 21 H 1.09002 * 109.47515 * 299.99719 * 1 2 3 22 22 H 0.96706 * 113.99991 * 59.99363 * 4 2 1 23 23 H 1.08999 * 109.47368 * 29.97703 * 8 7 6 24 24 H 1.09003 * 109.46970 * 149.97509 * 8 7 6 25 25 H 0.96998 * 119.99982 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 8 2.0063 -0.6735 -1.1668 5 6 2.0323 -0.7104 1.2305 6 7 2.5545 -0.1523 2.2959 7 6 2.8593 -1.1674 3.1239 8 6 3.4862 -1.0475 4.4889 9 6 4.9868 -1.0979 4.3588 10 1 5.4410 -1.2055 3.3849 11 6 5.7798 -1.0065 5.4830 12 7 7.0893 -1.0500 5.3693 13 14 4.9941 -0.8211 7.1675 14 1 4.7516 -2.1648 7.7513 15 1 5.9026 -0.0522 8.0556 16 1 3.7034 -0.0987 7.0350 17 7 2.5138 -2.2707 2.5304 18 8 2.0365 -2.0301 1.4416 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 -0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.7209 -0.2699 -1.9980 23 1 3.1924 -0.1006 4.9418 24 1 3.1483 -1.8713 5.1176 25 1 7.6471 -0.9861 6.1603 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259853133.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:13 Heat of formation + Delta-G solvation = -17.125470 kcal Electronic energy + Delta-G solvation = -12243.175656 eV Core-core repulsion = 9837.991544 eV Total energy + Delta-G solvation = -2405.184112 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -46.62295 -38.62653 -37.26779 -35.28957 -34.01632 -31.71614 -30.90655 -26.04440 -25.84558 -23.94592 -21.81134 -19.50552 -18.83615 -18.54511 -18.18573 -16.82799 -16.46663 -15.56877 -15.21956 -14.40294 -14.25391 -13.79103 -13.48453 -13.32364 -13.10079 -12.60939 -12.51039 -12.44680 -12.05280 -11.98606 -11.80043 -11.28354 -10.88959 -10.76883 -8.40097 -6.50432 0.14287 1.21425 1.35567 1.38395 1.50124 1.87328 2.29711 2.46942 2.92320 3.16228 3.62997 3.81605 4.00644 4.21497 4.52243 4.75595 4.79933 4.86736 4.96525 5.09909 5.23213 5.33181 6.05499 6.50463 6.82659 7.12390 7.23681 8.76953 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.070188 B = 0.008128 C = 0.007865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 398.830133 B = 3444.025877 C = 3559.440363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.207 3.793 3 H 0.122 0.878 4 O -0.575 6.575 5 C 0.172 3.828 6 N -0.492 5.492 7 C 0.193 3.807 8 C 0.074 3.926 9 C -0.536 4.536 10 H 0.017 0.983 11 C 0.016 3.984 12 N -0.942 5.942 13 Si 0.959 3.041 14 H -0.261 1.261 15 H -0.274 1.274 16 H -0.239 1.239 17 N -0.413 5.413 18 O 0.081 5.919 19 H 0.119 0.881 20 H 0.065 0.935 21 H 0.073 0.927 22 H 0.418 0.582 23 H 0.064 0.936 24 H 0.054 0.946 25 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.747 4.425 -9.780 19.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.146 3.854 3 H 0.139 0.861 4 O -0.387 6.387 5 C -0.049 4.049 6 N -0.227 5.227 7 C -0.079 4.079 8 C 0.035 3.965 9 C -0.575 4.575 10 H 0.035 0.965 11 C -0.183 4.183 12 N -0.581 5.581 13 Si 0.780 3.220 14 H -0.185 1.185 15 H -0.199 1.199 16 H -0.162 1.162 17 N -0.122 5.122 18 O 0.023 5.977 19 H 0.138 0.862 20 H 0.085 0.915 21 H 0.092 0.908 22 H 0.273 0.727 23 H 0.082 0.918 24 H 0.072 0.928 25 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.073 3.594 -8.668 17.755 hybrid contribution 0.258 0.194 0.087 0.334 sum -14.815 3.787 -8.582 17.535 Atomic orbital electron populations 1.22510 0.90674 1.04334 1.05754 1.20158 0.95181 0.92902 0.77126 0.86083 1.86509 1.77446 1.58103 1.16652 1.29494 0.95576 0.81321 0.98541 1.71783 1.16520 1.31464 1.02904 1.26202 0.97681 0.83035 1.00957 1.18068 0.93765 0.99808 0.84840 1.20816 0.89742 1.52931 0.94028 0.96454 1.25988 0.95106 0.93014 1.04189 1.70037 1.05567 1.50496 1.31981 0.85540 0.79659 0.79734 0.77078 1.18549 1.19896 1.16231 1.74589 1.17591 1.24513 0.95511 1.85215 1.58072 1.27495 1.26915 0.86231 0.91542 0.90844 0.72716 0.91808 0.92812 0.91720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.32 9.52 71.98 0.68 -1.64 15 2 C 0.21 4.33 4.13 29.85 0.12 4.45 15 3 H 0.12 2.10 8.14 -2.38 -0.02 2.08 15 4 O -0.58 -11.28 13.30 -148.89 -1.98 -13.26 15 5 C 0.17 6.08 7.40 88.38 0.65 6.74 15 6 N -0.49 -21.37 11.55 -303.20 -3.50 -24.88 15 7 C 0.19 9.48 7.41 138.46 1.03 10.50 15 8 C 0.07 3.80 4.67 29.10 0.14 3.94 15 9 C -0.54 -33.03 9.65 25.60 0.25 -32.78 15 10 H 0.02 1.21 7.98 -2.91 -0.02 1.18 15 11 C 0.02 0.93 5.47 84.65 0.46 1.39 15 12 N -0.94 -60.00 13.96 21.45 0.30 -59.70 15 13 Si 0.96 43.68 27.47 68.60 1.88 45.56 15 14 H -0.26 -11.34 7.11 99.48 0.71 -10.64 15 15 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 16 H -0.24 -9.92 6.54 99.48 0.65 -9.27 15 17 N -0.41 -19.53 12.16 -60.32 -0.73 -20.27 15 18 O 0.08 3.26 11.31 74.92 0.85 4.11 15 19 H 0.12 0.62 8.14 -2.39 -0.02 0.60 15 20 H 0.07 1.01 8.14 -2.39 -0.02 0.99 15 21 H 0.07 1.05 8.14 -2.39 -0.02 1.03 15 22 H 0.42 2.58 9.08 -74.05 -0.67 1.91 15 23 H 0.06 3.08 7.20 -2.39 -0.02 3.07 15 24 H 0.05 2.61 7.57 -2.39 -0.02 2.59 15 25 H 0.27 15.96 8.31 -92.71 -0.77 15.19 15 Total: -1.00 -79.01 231.45 0.63 -78.38 By element: Atomic # 1 Polarization: -3.04 SS G_CDS: 0.49 Total: -2.56 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 3.33 Total: -7.40 kcal Atomic # 7 Polarization: -100.90 SS G_CDS: -3.94 Total: -104.84 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: -1.13 Total: -9.15 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 1.88 Total: 45.56 kcal Total: -79.01 0.63 -78.38 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259853133.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.255 kcal (2) G-P(sol) polarization free energy of solvation -79.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds