Wall clock time and date at job start Mon Mar 30 2020 02:00:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35715 * 117.00103 * 2 1 4 4 N 1.30362 * 125.39528 * 359.69588 * 3 2 1 5 5 O 1.41863 * 107.37600 * 179.85353 * 4 3 2 6 6 N 1.41847 * 106.52738 * 0.40503 * 5 4 3 7 7 C 1.29834 * 107.55790 * 359.75937 * 6 5 4 8 8 C 1.50698 * 125.33640 * 180.02562 * 7 6 5 9 9 C 1.52997 * 109.47164 * 269.99582 * 8 7 6 10 10 C 1.50694 * 109.47162 * 179.97438 * 9 8 7 11 11 H 1.08006 * 120.00121 * 0.02562 * 10 9 8 12 12 C 1.37882 * 120.00061 * 180.02562 * 10 9 8 13 13 N 1.31517 * 119.99794 * 180.02562 * 12 10 9 14 14 Si 1.86793 * 119.99828 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47175 * 90.00228 * 14 12 10 16 16 H 1.48502 * 109.47056 * 210.00397 * 14 12 10 17 17 H 1.48498 * 109.47375 * 329.99972 * 14 12 10 18 18 H 1.09004 * 109.47453 * 59.99455 * 1 2 3 19 19 H 1.08995 * 109.47439 * 179.97438 * 1 2 3 20 20 H 1.08996 * 109.47255 * 299.99772 * 1 2 3 21 21 H 1.09002 * 109.46888 * 29.99766 * 8 7 6 22 22 H 1.09003 * 109.47152 * 149.99410 * 8 7 6 23 23 H 1.08996 * 109.47431 * 300.00298 * 9 8 7 24 24 H 1.08998 * 109.46792 * 60.00039 * 9 8 7 25 25 H 0.96999 * 119.99404 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 7 1.4411 2.3644 -0.0056 5 8 2.4445 3.3672 0.0001 6 7 3.6912 2.6906 0.0001 7 6 3.4449 1.4158 0.0000 8 6 4.4866 0.3268 0.0004 9 6 4.8397 -0.0418 -1.4419 10 6 5.8819 -1.1303 -1.4414 11 1 6.2548 -1.5205 -0.5059 12 6 6.3594 -1.6281 -2.6353 13 7 7.2685 -2.5784 -2.6348 14 14 5.7149 -0.9527 -4.2532 15 1 6.5558 0.1941 -4.6809 16 1 5.7646 -2.0162 -5.2885 17 1 4.3120 -0.4991 -4.0766 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 5.3807 0.6796 0.5146 22 1 4.0945 -0.5509 0.5142 23 1 3.9457 -0.3944 -1.9561 24 1 5.2319 0.8360 -1.9556 25 1 7.6041 -2.9288 -3.4748 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259902765.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:24 Heat of formation + Delta-G solvation = 25.374766 kcal Electronic energy + Delta-G solvation = -12251.527427 eV Core-core repulsion = 9848.186264 eV Total energy + Delta-G solvation = -2403.341163 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -42.70169 -39.81393 -36.56280 -34.65040 -33.16570 -32.39954 -28.89555 -27.88375 -24.16438 -23.29239 -21.85097 -19.46816 -18.98498 -17.86119 -17.50735 -16.39806 -16.05423 -16.01332 -15.41756 -14.96826 -14.64629 -13.74172 -13.53016 -13.36894 -13.03719 -12.89199 -12.75457 -12.49029 -11.96701 -11.74838 -11.55195 -11.43033 -10.98283 -10.77092 -8.29234 -6.33562 -0.62648 0.88453 1.03441 1.36228 1.37803 1.47670 1.88118 2.08576 2.35162 3.06314 3.14046 3.81219 4.01044 4.23597 4.24708 4.43969 4.48473 4.62824 4.85130 5.26302 5.30488 5.46979 5.58658 5.88479 6.24458 6.73759 7.30921 8.86723 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.041329 B = 0.009567 C = 0.009050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 677.323512 B = 2925.889097 C = 3093.211936 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.277 6.277 3 C 0.277 3.723 4 N -0.348 5.348 5 O 0.016 5.984 6 N -0.278 5.278 7 C 0.106 3.894 8 C -0.036 4.036 9 C -0.002 4.002 10 C -0.527 4.527 11 H 0.050 0.950 12 C 0.014 3.986 13 N -0.944 5.944 14 Si 0.938 3.062 15 H -0.270 1.270 16 H -0.281 1.281 17 H -0.251 1.251 18 H 0.067 0.933 19 H 0.144 0.856 20 H 0.074 0.926 21 H 0.095 0.905 22 H 0.110 0.890 23 H 0.026 0.974 24 H 0.016 0.984 25 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.675 5.143 4.071 15.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.179 6.179 3 C 0.057 3.943 4 N -0.119 5.119 5 O -0.119 6.119 6 N -0.025 5.025 7 C -0.078 4.078 8 C -0.075 4.075 9 C -0.040 4.040 10 C -0.565 4.565 11 H 0.068 0.932 12 C -0.184 4.184 13 N -0.584 5.584 14 Si 0.762 3.238 15 H -0.195 1.195 16 H -0.206 1.206 17 H -0.175 1.175 18 H 0.086 0.914 19 H 0.162 0.838 20 H 0.093 0.907 21 H 0.113 0.887 22 H 0.128 0.872 23 H 0.044 0.956 24 H 0.034 0.966 25 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.724 6.131 3.967 15.546 hybrid contribution 0.010 -0.585 -0.768 0.966 sum -13.714 5.545 3.199 15.134 Atomic orbital electron populations 1.23642 0.73580 1.07214 1.03363 1.86409 1.25685 1.19017 1.86767 1.22957 0.90933 0.87325 0.93072 1.80188 1.10680 0.96140 1.24891 1.93312 1.07443 1.24484 1.86692 1.79973 1.03063 1.05358 1.14097 1.24696 0.93590 0.94264 0.95264 1.20384 0.94239 0.92637 1.00210 1.19449 0.96258 0.95760 0.92561 1.21281 1.22004 1.19433 0.93824 0.93218 1.25821 0.94781 0.94865 1.02927 1.70028 1.31043 1.29181 1.28186 0.85845 0.80240 0.78433 0.79314 1.19547 1.20623 1.17495 0.91421 0.83817 0.90716 0.88666 0.87194 0.95561 0.96590 0.92350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.26 10.66 113.37 1.21 1.47 15 2 O -0.28 -7.36 10.54 -90.36 -0.95 -8.31 15 3 C 0.28 8.56 7.83 85.72 0.67 9.23 15 4 N -0.35 -10.97 12.34 -170.75 -2.11 -13.07 15 5 O 0.02 0.54 13.70 70.26 0.96 1.50 15 6 N -0.28 -9.97 12.97 -46.83 -0.61 -10.57 15 7 C 0.11 3.63 6.46 43.66 0.28 3.92 15 8 C -0.04 -1.30 5.68 29.85 0.17 -1.13 15 9 C 0.00 -0.07 4.02 29.85 0.12 0.05 15 10 C -0.53 -28.73 9.66 25.60 0.25 -28.48 15 11 H 0.05 2.91 7.99 -2.91 -0.02 2.88 15 12 C 0.01 0.78 5.47 84.66 0.46 1.25 15 13 N -0.94 -57.27 13.96 21.45 0.30 -56.97 15 14 Si 0.94 43.24 27.47 68.60 1.88 45.13 15 15 H -0.27 -12.19 7.11 99.48 0.71 -11.48 15 16 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 17 H -0.25 -10.86 6.54 99.48 0.65 -10.21 15 18 H 0.07 1.12 8.14 -2.38 -0.02 1.10 15 19 H 0.14 1.53 8.14 -2.39 -0.02 1.51 15 20 H 0.07 1.12 8.14 -2.39 -0.02 1.10 15 21 H 0.09 3.35 8.14 -2.39 -0.02 3.34 15 22 H 0.11 3.66 8.14 -2.39 -0.02 3.64 15 23 H 0.03 1.15 7.20 -2.39 -0.02 1.13 15 24 H 0.02 0.72 7.57 -2.39 -0.02 0.70 15 25 H 0.27 15.17 8.31 -92.71 -0.77 14.40 15 Total: -1.00 -63.60 233.29 3.78 -59.82 By element: Atomic # 1 Polarization: -4.96 SS G_CDS: 1.14 Total: -3.82 kcal Atomic # 6 Polarization: -16.87 SS G_CDS: 3.16 Total: -13.71 kcal Atomic # 7 Polarization: -78.20 SS G_CDS: -2.41 Total: -80.62 kcal Atomic # 8 Polarization: -6.82 SS G_CDS: 0.01 Total: -6.81 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.88 Total: 45.13 kcal Total: -63.60 3.78 -59.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259902765.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.197 kcal (2) G-P(sol) polarization free energy of solvation -63.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.822 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.375 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds