Wall clock time and date at job start Mon Mar 30 2020 02:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86796 * 120.00436 * 2 1 4 4 H 1.48497 * 109.47293 * 269.99908 * 3 2 1 5 5 H 1.48506 * 109.46987 * 29.99636 * 3 2 1 6 6 H 1.48497 * 109.47159 * 149.99636 * 3 2 1 7 7 C 1.37879 * 119.99685 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00241 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00032 * 0.02562 * 7 2 1 10 10 C 1.50697 * 109.47023 * 180.02562 * 9 7 2 11 11 C 1.34675 * 126.59403 * 85.02341 * 10 9 7 12 12 N 1.34124 * 108.02139 * 179.73770 * 11 10 9 13 13 C 1.30503 * 109.25583 * 359.97438 * 12 11 10 14 14 N 1.35041 * 108.69928 * 0.02562 * 13 12 11 15 15 C 1.46499 * 126.39322 * 180.02562 * 14 13 12 16 16 C 1.53002 * 109.47287 * 264.95635 * 15 14 13 17 17 F 1.39896 * 109.47290 * 180.02562 * 16 15 14 18 18 H 0.97003 * 119.99753 * 0.02562 * 1 2 3 19 19 H 1.08989 * 109.47052 * 60.00059 * 9 7 2 20 20 H 1.09002 * 109.46804 * 299.99709 * 9 7 2 21 21 H 1.07993 * 125.98561 * 359.73433 * 11 10 9 22 22 H 1.07997 * 125.64686 * 179.97438 * 13 12 11 23 23 H 1.08993 * 109.47447 * 24.95911 * 15 14 13 24 24 H 1.09005 * 109.47140 * 144.96052 * 15 14 13 25 25 H 1.09002 * 109.46910 * 300.00382 * 16 15 14 26 26 H 1.09005 * 109.46690 * 60.00141 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2301 -3.6447 0.0018 11 6 2.8223 -4.1935 1.0797 12 7 3.6162 -5.1879 0.6557 13 6 3.5381 -5.2766 -0.6440 14 7 2.6839 -4.3314 -1.0919 15 6 2.3116 -4.0873 -2.4876 16 6 3.1978 -2.9823 -3.0660 17 9 2.8420 -2.7488 -4.3987 18 1 -0.4850 0.8401 -0.0004 19 1 0.6246 -2.5571 -0.8896 20 1 0.6239 -2.5567 0.8903 21 1 2.6824 -3.8866 2.1056 22 1 4.0693 -5.9875 -1.2594 23 1 2.4475 -5.0016 -3.0651 24 1 1.2674 -3.7785 -2.5365 25 1 3.0619 -2.0679 -2.4885 26 1 4.2421 -3.2912 -3.0172 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259978571.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:10:49 Heat of formation + Delta-G solvation = -21.403994 kcal Electronic energy + Delta-G solvation = -12422.861163 eV Core-core repulsion = 10029.864310 eV Total energy + Delta-G solvation = -2392.996853 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.086 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -48.71424 -42.89273 -35.73342 -35.29202 -32.46317 -30.17375 -28.39705 -25.08711 -24.55553 -22.19535 -20.65187 -18.55940 -18.17899 -17.20122 -16.85879 -16.50755 -16.16271 -15.34224 -15.07965 -14.55695 -14.28284 -13.94641 -13.62871 -13.36235 -12.72592 -12.64172 -12.58937 -11.99234 -11.82936 -11.62460 -10.86381 -10.60156 -10.43284 -9.13929 -8.22414 -6.35922 1.23512 1.38890 1.41421 1.51356 1.89975 2.28678 2.41416 3.08638 3.52953 3.62467 3.94121 3.95783 4.10842 4.26465 4.37180 4.64098 4.82802 4.89338 5.14913 5.27344 5.68976 5.73985 5.84832 6.12138 6.46823 6.74091 7.21667 7.33421 8.85517 Molecular weight = 198.09amu Principal moments of inertia in cm(-1) A = 0.028485 B = 0.013056 C = 0.010215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.721010 B = 2144.112741 C = 2740.369147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.957 3.043 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.268 1.268 7 C -0.524 4.524 8 H 0.052 0.948 9 C 0.096 3.904 10 C 0.013 3.987 11 C -0.069 4.069 12 N -0.525 5.525 13 C 0.174 3.826 14 N -0.458 5.458 15 C 0.084 3.916 16 C 0.051 3.949 17 F -0.217 7.217 18 H 0.266 0.734 19 H 0.010 0.990 20 H 0.018 0.982 21 H 0.159 0.841 22 H 0.249 0.751 23 H 0.143 0.857 24 H 0.086 0.914 25 H 0.065 0.935 26 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.565 -6.795 -6.526 10.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.186 4.186 3 Si 0.782 3.218 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.562 4.562 8 H 0.071 0.929 9 C 0.058 3.942 10 C -0.102 4.102 11 C -0.214 4.214 12 N -0.243 5.243 13 C -0.107 4.107 14 N -0.143 5.143 15 C -0.039 4.039 16 C -0.004 4.004 17 F -0.198 7.198 18 H 0.075 0.925 19 H 0.029 0.971 20 H 0.036 0.964 21 H 0.176 0.824 22 H 0.265 0.735 23 H 0.160 0.840 24 H 0.105 0.895 25 H 0.084 0.916 26 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 5.849 -7.159 -6.168 11.114 hybrid contribution -0.489 1.601 -0.300 1.701 sum 5.360 -5.558 -6.468 10.073 Atomic orbital electron populations 1.70046 1.07463 1.28045 1.50841 1.25790 0.95643 1.02679 0.94535 0.85555 0.78702 0.78989 0.78534 1.19702 1.20562 1.19284 1.21235 0.92849 0.90815 1.51338 0.92948 1.17505 0.91410 0.88589 0.96713 1.21879 1.02911 0.98242 0.87193 1.21958 1.01892 0.98613 0.98936 1.70145 1.22932 1.20447 1.10816 1.25674 0.96998 0.96386 0.91679 1.45263 1.35302 1.26927 1.06810 1.22371 1.00692 1.01807 0.79068 1.22286 1.00505 1.00196 0.77448 1.92741 1.94011 1.96021 1.37022 0.92453 0.97135 0.96411 0.82376 0.73541 0.83956 0.89543 0.91626 0.88015 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.26 13.29 21.45 0.28 -52.97 15 2 C 0.01 0.69 5.46 84.66 0.46 1.16 15 3 Si 0.96 42.84 29.54 68.60 2.03 44.86 15 4 H -0.27 -11.74 7.11 99.48 0.71 -11.04 15 5 H -0.28 -12.29 7.11 99.48 0.71 -11.59 15 6 H -0.27 -11.75 7.11 99.48 0.71 -11.04 15 7 C -0.52 -28.26 8.84 25.60 0.23 -28.03 15 8 H 0.05 2.82 7.74 -2.91 -0.02 2.80 15 9 C 0.10 4.84 5.31 29.10 0.15 5.00 15 10 C 0.01 0.54 6.14 40.95 0.25 0.79 15 11 C -0.07 -2.94 11.79 83.53 0.98 -1.95 15 12 N -0.52 -20.11 11.25 -200.32 -2.25 -22.36 15 13 C 0.17 5.27 12.56 180.26 2.26 7.53 15 14 N -0.46 -15.43 2.75 -514.57 -1.42 -16.84 15 15 C 0.08 2.26 6.38 86.38 0.55 2.81 15 16 C 0.05 1.46 7.88 71.98 0.57 2.03 15 17 F -0.22 -6.45 17.36 44.97 0.78 -5.67 15 18 H 0.27 14.49 8.31 -92.71 -0.77 13.72 15 19 H 0.01 0.55 7.20 -2.39 -0.02 0.53 15 20 H 0.02 0.97 8.14 -2.39 -0.02 0.95 15 21 H 0.16 6.59 8.06 -2.91 -0.02 6.56 15 22 H 0.25 4.51 8.06 -2.91 -0.02 4.49 15 23 H 0.14 2.50 8.13 -2.39 -0.02 2.48 15 24 H 0.09 2.64 7.29 -2.38 -0.02 2.62 15 25 H 0.07 2.38 7.88 -2.39 -0.02 2.36 15 26 H 0.10 2.34 8.14 -2.38 -0.02 2.32 15 Total: -1.00 -64.56 238.80 6.05 -58.50 By element: Atomic # 1 Polarization: 4.00 SS G_CDS: 1.17 Total: 5.17 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: 5.46 Total: -10.68 kcal Atomic # 7 Polarization: -88.80 SS G_CDS: -3.38 Total: -92.18 kcal Atomic # 9 Polarization: -6.45 SS G_CDS: 0.78 Total: -5.67 kcal Atomic # 14 Polarization: 42.84 SS G_CDS: 2.03 Total: 44.86 kcal Total: -64.56 6.05 -58.50 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259978571.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.100 kcal (2) G-P(sol) polarization free energy of solvation -64.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds