Wall clock time and date at job start Mon Mar 30 2020 02:05:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00307 * 2 1 4 4 H 1.48498 * 109.46867 * 270.00351 * 3 2 1 5 5 H 1.48497 * 109.46656 * 30.00385 * 3 2 1 6 6 H 1.48495 * 109.46858 * 150.00281 * 3 2 1 7 7 C 1.37885 * 119.99774 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.50695 * 119.99800 * 359.97438 * 7 2 1 10 10 C 1.53007 * 109.47140 * 180.02562 * 9 7 2 11 11 H 1.08998 * 115.53658 * 330.61062 * 10 9 7 12 12 C 1.52889 * 117.48622 * 116.22913 * 10 9 7 13 13 C 1.53538 * 60.14714 * 107.52923 * 12 10 9 14 14 C 1.53428 * 119.33050 * 251.22928 * 13 12 10 15 15 C 1.55012 * 109.11950 * 245.35594 * 14 13 12 16 16 S 1.84156 * 100.85980 * 318.08423 * 15 14 13 17 17 C 1.54194 * 118.84556 * 108.38857 * 13 12 10 18 18 H 0.97005 * 119.99862 * 359.97438 * 1 2 3 19 19 H 1.09000 * 109.47142 * 60.00520 * 9 7 2 20 20 H 1.08995 * 109.47742 * 300.00553 * 9 7 2 21 21 H 1.09000 * 117.48186 * 0.02562 * 12 10 9 22 22 H 1.08997 * 117.48588 * 215.06325 * 12 10 9 23 23 H 1.08999 * 109.54831 * 5.28832 * 14 13 12 24 24 H 1.09003 * 109.54492 * 125.43364 * 14 13 12 25 25 H 1.09005 * 111.14551 * 75.91531 * 15 14 13 26 26 H 1.08999 * 111.15203 * 200.09298 * 15 14 13 27 27 H 1.09002 * 110.29510 * 261.27519 * 17 13 12 28 28 H 1.08999 * 110.29393 * 23.30429 * 17 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6525 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6622 -0.0005 11 1 3.2019 -3.4626 -0.4832 12 6 2.2480 -4.5881 1.2161 13 6 1.6741 -5.0827 -0.1193 14 6 0.1584 -5.2729 -0.2616 15 6 -0.1470 -6.7782 -0.4710 16 16 1.1937 -7.2442 -1.6443 17 6 2.4628 -6.1357 -0.9235 18 1 -0.4850 0.8401 0.0004 19 1 0.6240 -2.5567 -0.8903 20 1 0.6246 -2.5571 0.8896 21 1 1.5413 -4.3690 2.0166 22 1 3.2067 -4.9977 1.5343 23 1 -0.3397 -4.9219 0.6422 24 1 -0.2015 -4.7050 -1.1196 25 1 -0.0591 -7.3311 0.4644 26 1 -1.1304 -6.9215 -0.9186 27 1 3.0378 -5.6545 -1.7147 28 1 3.1246 -6.6972 -0.2641 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260029468.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:09 Heat of formation + Delta-G solvation = -11.095242 kcal Electronic energy + Delta-G solvation = -10578.811073 eV Core-core repulsion = 8720.181666 eV Total energy + Delta-G solvation = -1858.629407 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.66212 -35.16162 -33.30694 -30.68670 -28.75313 -25.30309 -24.75797 -21.76216 -19.55476 -18.51841 -17.46514 -16.60481 -16.14720 -15.75553 -14.85819 -14.36342 -14.30840 -13.99465 -13.33019 -13.27034 -12.84206 -12.78027 -12.70526 -12.39341 -12.16143 -11.56904 -11.36200 -11.18682 -10.75725 -10.42420 -10.26817 -8.72162 -8.19798 -6.30015 0.92703 1.34275 1.40620 1.41364 1.52434 2.40730 2.80121 3.14027 3.56923 3.73298 3.89667 4.04114 4.19207 4.44906 4.56503 4.61292 4.62382 4.78939 4.85844 5.01335 5.05356 5.24681 5.29629 5.53525 5.66067 5.82861 6.26022 6.85299 7.38762 8.91641 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.068250 B = 0.007808 C = 0.007536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 410.160784 B = 3585.035505 C = 3714.392017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.963 3.037 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.263 1.263 7 C -0.538 4.538 8 H 0.059 0.941 9 C 0.060 3.940 10 C -0.124 4.124 11 H 0.095 0.905 12 C -0.148 4.148 13 C -0.143 4.143 14 C -0.088 4.088 15 C -0.044 4.044 16 S -0.337 6.337 17 C -0.019 4.019 18 H 0.263 0.737 19 H -0.008 1.008 20 H -0.004 1.004 21 H 0.088 0.912 22 H 0.113 0.887 23 H 0.076 0.924 24 H 0.059 0.941 25 H 0.108 0.892 26 H 0.119 0.881 27 H 0.094 0.906 28 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.662 -11.479 0.958 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.187 1.187 7 C -0.576 4.576 8 H 0.078 0.922 9 C 0.023 3.977 10 C -0.143 4.143 11 H 0.113 0.887 12 C -0.185 4.185 13 C -0.144 4.144 14 C -0.127 4.127 15 C -0.192 4.192 16 S -0.111 6.111 17 C -0.167 4.167 18 H 0.072 0.928 19 H 0.010 0.990 20 H 0.014 0.986 21 H 0.107 0.893 22 H 0.131 0.869 23 H 0.095 0.905 24 H 0.078 0.922 25 H 0.126 0.874 26 H 0.137 0.863 27 H 0.113 0.887 28 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 2.550 -12.176 0.012 12.440 hybrid contribution 0.084 1.904 0.790 2.063 sum 2.634 -10.272 0.802 10.634 Atomic orbital electron populations 1.70088 1.07731 1.27723 1.51791 1.25936 0.95728 1.03199 0.94812 0.85478 0.78736 0.78620 0.78416 1.19945 1.20793 1.18717 1.21677 0.93502 0.92198 1.50257 0.92250 1.18488 0.93090 0.91467 0.94633 1.22668 1.00160 0.89472 1.01952 0.88731 1.23338 1.02591 1.02165 0.90415 1.22343 0.94210 0.96556 1.01273 1.21797 0.93150 0.95083 1.02662 1.24327 0.98505 0.96470 0.99882 1.87676 1.14786 1.59379 1.49237 1.23467 0.96915 0.95432 1.00876 0.92806 0.98998 0.98572 0.89322 0.86881 0.90510 0.92195 0.87370 0.86310 0.88737 0.87506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.42 13.29 21.45 0.28 -56.13 15 2 C 0.00 0.05 5.46 84.66 0.46 0.52 15 3 Si 0.96 44.06 29.54 68.60 2.03 46.09 15 4 H -0.27 -12.18 7.11 99.48 0.71 -11.47 15 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 15 6 H -0.26 -11.48 7.11 99.48 0.71 -10.77 15 7 C -0.54 -30.40 9.08 25.60 0.23 -30.17 15 8 H 0.06 3.22 7.68 -2.91 -0.02 3.20 15 9 C 0.06 3.11 4.46 29.85 0.13 3.25 15 10 C -0.12 -4.96 5.49 -10.64 -0.06 -5.01 15 11 H 0.09 3.77 8.00 -2.39 -0.02 3.75 15 12 C -0.15 -4.74 9.70 30.74 0.30 -4.44 15 13 C -0.14 -4.60 2.52 -51.27 -0.13 -4.73 15 14 C -0.09 -2.78 5.15 31.43 0.16 -2.61 15 15 C -0.04 -1.09 7.53 72.67 0.55 -0.55 15 16 S -0.34 -9.54 23.23 -56.49 -1.31 -10.86 15 17 C -0.02 -0.53 6.97 72.39 0.50 -0.02 15 18 H 0.26 14.97 8.31 -92.70 -0.77 14.20 15 19 H -0.01 -0.47 7.81 -2.39 -0.02 -0.49 15 20 H 0.00 -0.22 7.87 -2.39 -0.02 -0.24 15 21 H 0.09 2.93 8.03 -2.39 -0.02 2.91 15 22 H 0.11 2.99 8.14 -2.39 -0.02 2.97 15 23 H 0.08 2.44 8.03 -2.39 -0.02 2.42 15 24 H 0.06 2.16 7.84 -2.39 -0.02 2.14 15 25 H 0.11 2.25 8.14 -2.38 -0.02 2.23 15 26 H 0.12 2.53 8.14 -2.39 -0.02 2.51 15 27 H 0.09 2.66 8.14 -2.39 -0.02 2.64 15 28 H 0.11 2.51 8.12 -2.39 -0.02 2.49 15 Total: -1.00 -62.39 247.99 4.27 -58.12 By element: Atomic # 1 Polarization: 5.43 SS G_CDS: 1.12 Total: 6.55 kcal Atomic # 6 Polarization: -45.93 SS G_CDS: 2.15 Total: -43.77 kcal Atomic # 7 Polarization: -56.42 SS G_CDS: 0.28 Total: -56.13 kcal Atomic # 14 Polarization: 44.06 SS G_CDS: 2.03 Total: 46.09 kcal Atomic # 16 Polarization: -9.54 SS G_CDS: -1.31 Total: -10.86 kcal Total: -62.39 4.27 -58.12 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260029468.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.029 kcal (2) G-P(sol) polarization free energy of solvation -62.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.363 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.124 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds