Wall clock time and date at job start Mon Mar 30 2020 02:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40281 * 126.64089 * 2 1 4 4 C 1.29188 * 107.86900 * 180.14947 * 3 2 1 5 5 C 1.50701 * 125.34869 * 179.88759 * 4 3 2 6 6 C 1.52997 * 109.47212 * 359.72185 * 5 4 3 7 7 C 1.50697 * 109.47466 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99890 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00428 * 179.97438 * 7 6 5 10 10 N 1.31519 * 119.99563 * 0.02562 * 9 7 6 11 11 Si 1.86800 * 120.00432 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.46616 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47104 * 119.99966 * 11 9 7 14 14 H 1.48489 * 109.47200 * 240.00246 * 11 9 7 15 15 O 1.34770 * 109.30057 * 359.62784 * 4 3 2 16 16 C 1.34315 * 108.85532 * 0.24097 * 15 4 3 17 17 O 1.21709 * 126.37577 * 180.02562 * 16 15 4 18 18 H 1.08996 * 109.47331 * 180.23976 * 1 2 3 19 19 H 1.09003 * 109.47083 * 300.24203 * 1 2 3 20 20 H 1.08999 * 109.47192 * 60.23912 * 1 2 3 21 21 H 1.09002 * 109.47060 * 119.72240 * 5 4 3 22 22 H 1.09001 * 109.47380 * 239.72328 * 5 4 3 23 23 H 1.09002 * 109.47153 * 299.99998 * 6 5 4 24 24 H 1.08998 * 109.47533 * 59.99628 * 6 5 4 25 25 H 0.97002 * 119.99731 * 180.02562 * 10 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3022 1.1256 0.0000 4 6 3.5253 0.7099 -0.0032 5 6 4.7464 1.5931 -0.0068 6 6 4.3142 3.0608 -0.0131 7 6 5.5352 3.9440 -0.0160 8 1 6.5209 3.5027 -0.0141 9 6 5.3940 5.3155 -0.0223 10 7 4.1936 5.8529 -0.0251 11 14 6.9075 6.4104 -0.0252 12 1 8.1291 5.5661 -0.0206 13 1 6.8998 7.2623 -1.2415 14 1 6.8968 7.2730 1.1834 15 8 3.5378 -0.6378 0.0029 16 6 2.2708 -1.0836 0.0049 17 8 1.9151 -2.2475 0.0107 18 1 -0.3634 -1.0276 0.0043 19 1 -0.3633 0.5176 0.8878 20 1 -0.3633 0.5101 -0.8921 21 1 5.3418 1.3935 0.8841 22 1 5.3421 1.3860 -0.8958 23 1 3.7188 3.2604 -0.9040 24 1 3.7185 3.2680 0.8759 25 1 4.0942 6.8178 -0.0299 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260078825.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:00 Heat of formation + Delta-G solvation = -38.411968 kcal Electronic energy + Delta-G solvation = -12153.729543 eV Core-core repulsion = 9747.622379 eV Total energy + Delta-G solvation = -2406.107164 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -44.49951 -39.28407 -37.33434 -36.16348 -34.10932 -31.98609 -28.93398 -27.11501 -24.78452 -23.38929 -22.27319 -19.03779 -18.94354 -18.31398 -17.51919 -16.86712 -16.41067 -15.65233 -15.34083 -15.05331 -14.23845 -14.12337 -13.64370 -13.34664 -12.89245 -12.86626 -12.58830 -12.47379 -12.10427 -11.97109 -11.58675 -11.22721 -10.51840 -10.01225 -8.14886 -6.25902 0.54230 0.63295 0.96910 1.47892 1.48984 1.59187 1.62965 2.47604 3.08197 3.20890 3.85114 4.21832 4.38327 4.40840 4.50049 4.64323 4.72890 4.84422 5.01344 5.56011 5.65247 5.87210 6.20216 6.23754 6.45566 6.91615 7.43827 8.97276 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.079696 B = 0.007246 C = 0.006683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 351.249777 B = 3863.183974 C = 4188.685408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.114 3.886 2 N -0.460 5.460 3 N -0.284 5.284 4 C 0.260 3.740 5 C -0.020 4.020 6 C 0.038 3.962 7 C -0.540 4.540 8 H 0.077 0.923 9 C 0.002 3.998 10 N -0.931 5.931 11 Si 0.964 3.036 12 H -0.256 1.256 13 H -0.284 1.284 14 H -0.284 1.284 15 O -0.276 6.276 16 C 0.593 3.407 17 O -0.523 6.523 18 H 0.112 0.888 19 H 0.095 0.905 20 H 0.095 0.905 21 H 0.120 0.880 22 H 0.120 0.880 23 H 0.002 0.998 24 H 0.002 0.998 25 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.038 -8.167 0.028 8.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.291 5.291 3 N -0.113 5.113 4 C 0.035 3.965 5 C -0.058 4.058 6 C 0.000 4.000 7 C -0.578 4.578 8 H 0.095 0.905 9 C -0.196 4.196 10 N -0.571 5.571 11 Si 0.790 3.210 12 H -0.179 1.179 13 H -0.210 1.210 14 H -0.210 1.210 15 O -0.172 6.172 16 C 0.346 3.654 17 O -0.408 6.408 18 H 0.130 0.870 19 H 0.113 0.887 20 H 0.113 0.887 21 H 0.137 0.863 22 H 0.138 0.862 23 H 0.021 0.979 24 H 0.021 0.979 25 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.831 -8.098 0.033 8.959 hybrid contribution 0.624 0.158 -0.002 0.644 sum -3.206 -7.941 0.031 8.564 Atomic orbital electron populations 1.22107 0.69035 1.05796 1.05367 1.50267 1.09255 1.01657 1.67940 1.77513 1.00208 1.09941 1.23630 1.27516 0.96960 0.78260 0.93721 1.20729 0.87648 0.91076 1.06370 1.18828 0.96193 0.88385 0.96569 1.21646 0.93792 0.91636 1.50686 0.90532 1.25915 0.98808 1.00070 0.94790 1.70126 1.23909 1.11644 1.51459 0.85402 0.79750 0.78580 0.77310 1.17946 1.20989 1.20985 1.85124 1.30366 1.23545 1.78210 1.19479 0.79377 0.86660 0.79914 1.91126 1.75922 1.15314 1.58483 0.86989 0.88674 0.88660 0.86253 0.86243 0.97916 0.97911 0.92892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.44 11.56 127.77 1.48 3.91 15 2 N -0.46 -14.77 4.04 -612.23 -2.47 -17.24 15 3 N -0.28 -10.58 11.79 -166.09 -1.96 -12.54 15 4 C 0.26 9.23 8.09 88.50 0.72 9.95 15 5 C -0.02 -0.69 5.78 29.85 0.17 -0.52 15 6 C 0.04 1.78 4.42 29.85 0.13 1.92 15 7 C -0.54 -27.58 9.11 25.60 0.23 -27.35 15 8 H 0.08 3.60 7.74 -2.91 -0.02 3.57 15 9 C 0.00 0.13 5.46 84.65 0.46 0.59 15 10 N -0.93 -54.10 13.29 21.45 0.28 -53.81 15 11 Si 0.96 41.53 29.54 68.60 2.03 43.56 15 12 H -0.26 -10.27 7.11 99.48 0.71 -9.56 15 13 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 14 H -0.28 -12.14 7.11 99.48 0.71 -11.44 15 15 O -0.28 -9.63 10.71 15.90 0.17 -9.46 15 16 C 0.59 20.89 9.26 129.75 1.20 22.09 15 17 O -0.52 -19.87 17.70 18.75 0.33 -19.54 15 18 H 0.11 2.01 7.81 -2.39 -0.02 1.99 15 19 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 15 21 H 0.12 3.68 8.14 -2.39 -0.02 3.66 15 22 H 0.12 3.68 8.14 -2.39 -0.02 3.66 15 23 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 24 H 0.00 0.13 8.14 -2.39 -0.02 0.11 15 25 H 0.26 14.39 8.31 -92.71 -0.77 13.62 15 Total: -1.00 -64.67 234.77 3.97 -60.70 By element: Atomic # 1 Polarization: -3.46 SS G_CDS: 1.19 Total: -2.26 kcal Atomic # 6 Polarization: 6.20 SS G_CDS: 4.39 Total: 10.59 kcal Atomic # 7 Polarization: -79.44 SS G_CDS: -4.15 Total: -83.59 kcal Atomic # 8 Polarization: -29.50 SS G_CDS: 0.50 Total: -29.00 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -64.67 3.97 -60.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260078825.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.288 kcal (2) G-P(sol) polarization free energy of solvation -64.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.412 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds