Wall clock time and date at job start Mon Mar 30 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.08998 * 110.64779 * 56.70443 * 10 9 7 12 12 C 1.54444 * 110.72980 * 180.02562 * 10 9 7 13 13 O 1.43885 * 105.08713 * 140.14746 * 12 10 9 14 14 C 1.43785 * 107.10416 * 1.70695 * 13 12 10 15 15 H 1.08994 * 110.16986 * 94.12029 * 14 13 12 16 16 C 1.53007 * 110.11344 * 215.74030 * 14 13 12 17 17 C 1.52989 * 117.49855 * 5.48690 * 16 14 13 18 18 C 1.52995 * 117.49736 * 296.82390 * 16 14 13 19 19 O 1.44391 * 106.17339 * 334.91327 * 14 13 12 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09005 * 110.31779 * 259.05079 * 12 10 9 24 24 H 1.08997 * 110.32402 * 21.24226 * 12 10 9 25 25 H 1.09003 * 115.54542 * 151.16030 * 16 14 13 26 26 H 1.08999 * 117.50400 * 0.02562 * 17 16 14 27 27 H 1.09008 * 117.50187 * 145.02116 * 17 16 14 28 28 H 1.08996 * 117.50070 * 214.98023 * 18 16 14 29 29 H 1.09004 * 117.50218 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9203 -3.5943 0.8425 12 6 1.5023 -5.0163 -0.0172 13 8 2.2577 -5.8533 -0.9111 14 6 3.3813 -5.0801 -1.3663 15 1 4.2510 -5.2758 -0.7391 16 6 3.6975 -5.4196 -2.8243 17 6 2.7412 -6.3658 -3.5528 18 6 4.1317 -6.8528 -3.1377 19 8 2.9889 -3.6952 -1.2529 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.4901 -5.4462 0.9844 24 1 0.4852 -4.8883 -0.3874 25 1 4.1521 -4.6175 -3.4058 26 1 1.8864 -6.7462 -2.9936 27 1 2.5666 -6.1865 -4.6137 28 1 4.8715 -6.9936 -3.9257 29 1 4.1925 -7.5538 -2.3052 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260104739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:10 Heat of formation + Delta-G solvation = -74.061341 kcal Electronic energy + Delta-G solvation = -12729.303839 eV Core-core repulsion = 10425.191146 eV Total energy + Delta-G solvation = -2304.112693 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.88182 -36.59931 -34.45037 -33.13563 -30.74861 -27.00840 -25.22894 -23.17647 -22.24317 -20.99395 -19.73737 -17.01833 -16.33525 -15.96751 -15.31867 -14.74032 -14.60327 -14.28610 -13.31613 -12.61189 -12.34524 -11.83842 -11.56516 -11.45983 -11.28391 -11.16754 -10.62040 -10.51958 -10.29068 -10.10310 -9.77294 -9.35272 -9.16972 -9.05463 -8.40097 -6.02503 -4.03637 3.31901 3.39215 3.44642 3.85012 4.05365 4.36948 4.45960 5.03096 5.07824 5.28321 5.30428 5.36725 5.51196 5.57993 5.71487 5.76215 5.89712 6.05811 6.21943 6.30824 6.37262 6.41431 6.77321 7.35355 7.53843 7.77089 7.94602 8.34581 9.00499 9.59684 11.09189 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.056274 B = 0.008348 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.443291 B = 3353.155760 C = 3584.716514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.895 3.105 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.512 4.512 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.056 3.944 11 H 0.070 0.930 12 C 0.022 3.978 13 O -0.394 6.394 14 C 0.251 3.749 15 H 0.069 0.931 16 C -0.158 4.158 17 C -0.162 4.162 18 C -0.173 4.173 19 O -0.352 6.352 20 H 0.261 0.739 21 H 0.035 0.965 22 H 0.029 0.971 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.119 0.881 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.457 -10.822 -2.737 12.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.723 3.277 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.550 4.550 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.001 4.001 11 H 0.088 0.912 12 C -0.054 4.054 13 O -0.315 6.315 14 C 0.156 3.844 15 H 0.086 0.914 16 C -0.177 4.177 17 C -0.199 4.199 18 C -0.210 4.210 19 O -0.272 6.272 20 H 0.070 0.930 21 H 0.053 0.947 22 H 0.048 0.952 23 H 0.092 0.908 24 H 0.100 0.900 25 H 0.137 0.863 26 H 0.123 0.877 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 5.311 -10.730 -2.945 12.329 hybrid contribution 0.455 1.030 0.195 1.143 sum 5.767 -9.699 -2.751 11.614 Atomic orbital electron populations 1.69964 1.06049 1.26637 1.51030 1.25001 0.94869 0.99344 0.95280 0.86477 0.80154 0.83525 0.77523 1.19688 1.20981 1.21049 1.21141 0.93226 0.90410 1.50255 0.92288 1.19216 0.92881 0.90486 0.98407 1.24114 0.93852 0.96104 0.86061 0.91213 1.24137 0.96977 0.90834 0.93489 1.88751 1.39948 1.38777 1.64069 1.23575 0.89206 0.78572 0.93081 0.91367 1.22334 1.05712 0.94143 0.95461 1.22876 0.94086 1.02766 1.00162 1.22928 0.98569 0.96155 1.03371 1.89599 1.72291 1.23433 1.41923 0.92981 0.94662 0.95231 0.90802 0.89958 0.86263 0.87657 0.89072 0.88812 0.88742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.91 13.29 55.43 0.74 -26.17 15 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 15 3 Si 0.90 21.94 29.54 -169.99 -5.02 16.92 15 4 H -0.27 -6.57 7.11 56.52 0.40 -6.17 15 5 H -0.28 -6.90 7.11 56.52 0.40 -6.50 15 6 H -0.28 -6.83 7.11 56.52 0.40 -6.43 15 7 C -0.51 -14.66 8.96 -34.44 -0.31 -14.97 15 8 H 0.06 1.68 7.74 -52.49 -0.41 1.28 15 9 C 0.03 0.70 4.63 -27.88 -0.13 0.57 15 10 C 0.06 1.20 3.36 -25.98 -0.09 1.11 15 11 H 0.07 1.43 8.14 -51.93 -0.42 1.00 15 12 C 0.02 0.40 7.66 37.92 0.29 0.69 15 13 O -0.39 -7.10 9.67 -59.28 -0.57 -7.67 15 14 C 0.25 4.48 4.26 37.16 0.16 4.64 15 15 H 0.07 1.12 8.14 -51.93 -0.42 0.69 15 16 C -0.16 -2.43 6.09 -90.62 -0.55 -2.98 15 17 C -0.16 -2.25 9.89 -26.70 -0.26 -2.51 15 18 C -0.17 -2.13 10.23 -26.70 -0.27 -2.40 15 19 O -0.35 -7.82 11.07 -59.28 -0.66 -8.47 15 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.04 0.92 8.14 -51.93 -0.42 0.50 15 22 H 0.03 0.82 8.14 -51.93 -0.42 0.40 15 23 H 0.07 1.14 8.14 -51.93 -0.42 0.72 15 24 H 0.08 1.49 7.85 -51.93 -0.41 1.09 15 25 H 0.12 1.81 8.14 -51.93 -0.42 1.39 15 26 H 0.11 1.57 7.06 -51.93 -0.37 1.20 15 27 H 0.09 1.12 8.14 -51.92 -0.42 0.70 15 28 H 0.09 0.96 8.14 -51.93 -0.42 0.54 15 29 H 0.09 1.13 8.14 -51.93 -0.42 0.71 15 LS Contribution 249.66 15.07 3.76 3.76 Total: -1.00 -30.71 249.66 -7.13 -37.85 By element: Atomic # 1 Polarization: 2.25 SS G_CDS: -4.12 Total: -1.87 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -1.26 Total: -14.34 kcal Atomic # 7 Polarization: -26.91 SS G_CDS: 0.74 Total: -26.17 kcal Atomic # 8 Polarization: -14.92 SS G_CDS: -1.23 Total: -16.15 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.02 Total: 16.92 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.71 -7.13 -37.85 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.215 kcal (2) G-P(sol) polarization free energy of solvation -30.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds