Wall clock time and date at job start Mon Mar 30 2020 02:15:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48496 * 109.47341 * 179.97438 * 3 2 1 5 5 H 1.48508 * 109.46983 * 299.99446 * 3 2 1 6 6 H 1.48503 * 109.47491 * 59.99259 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.52996 * 109.47159 * 179.72211 * 9 7 2 11 11 H 1.08998 * 110.64779 * 56.70443 * 10 9 7 12 12 C 1.54444 * 110.72980 * 180.02562 * 10 9 7 13 13 O 1.43885 * 105.08713 * 140.14746 * 12 10 9 14 14 C 1.43785 * 107.10416 * 1.70695 * 13 12 10 15 15 H 1.08994 * 110.16986 * 94.12029 * 14 13 12 16 16 C 1.53007 * 110.11344 * 215.74030 * 14 13 12 17 17 C 1.52989 * 117.49855 * 5.48690 * 16 14 13 18 18 C 1.52995 * 117.49736 * 296.82390 * 16 14 13 19 19 O 1.44391 * 106.17339 * 334.91327 * 14 13 12 20 20 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 21 21 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 22 22 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 23 23 H 1.09005 * 110.31779 * 259.05079 * 12 10 9 24 24 H 1.08997 * 110.32402 * 21.24226 * 12 10 9 25 25 H 1.09003 * 115.54542 * 151.16030 * 16 14 13 26 26 H 1.08999 * 117.50400 * 0.02562 * 17 16 14 27 27 H 1.09008 * 117.50187 * 145.02116 * 17 16 14 28 28 H 1.08996 * 117.50070 * 214.98023 * 18 16 14 29 29 H 1.09004 * 117.50218 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3462 0.0006 5 1 1.8906 2.3963 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2451 -3.6622 -0.0104 11 1 2.9203 -3.5943 0.8425 12 6 1.5023 -5.0163 -0.0172 13 8 2.2577 -5.8533 -0.9111 14 6 3.3813 -5.0801 -1.3663 15 1 4.2510 -5.2758 -0.7391 16 6 3.6975 -5.4196 -2.8243 17 6 2.7412 -6.3658 -3.5528 18 6 4.1317 -6.8528 -3.1377 19 8 2.9889 -3.6952 -1.2529 20 1 -0.4850 0.8401 -0.0004 21 1 0.6242 -2.5609 0.8844 22 1 0.6244 -2.5529 -0.8956 23 1 1.4901 -5.4462 0.9844 24 1 0.4852 -4.8883 -0.3874 25 1 4.1521 -4.6175 -3.4058 26 1 1.8864 -6.7462 -2.9936 27 1 2.5666 -6.1865 -4.6137 28 1 4.8715 -6.9936 -3.9257 29 1 4.1925 -7.5538 -2.3052 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260104739.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:10 Heat of formation + Delta-G solvation = -93.435208 kcal Electronic energy + Delta-G solvation = -12730.143953 eV Core-core repulsion = 10425.191146 eV Total energy + Delta-G solvation = -2304.952807 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37030 -37.79131 -36.03278 -35.18796 -32.61970 -28.83203 -26.67597 -25.07676 -23.26133 -22.63891 -21.13830 -18.82028 -17.89784 -17.67184 -16.93353 -16.45328 -16.10829 -15.64349 -14.65603 -14.49468 -14.07319 -13.59968 -13.34651 -13.10897 -12.84266 -12.56609 -12.36278 -12.33763 -11.78766 -11.36364 -11.32994 -11.07701 -10.99932 -10.62001 -10.56437 -8.23097 -6.32483 1.38800 1.39863 1.53244 2.39793 2.59308 2.69859 3.06637 3.14196 3.69889 3.88426 3.94585 4.00090 4.13408 4.21819 4.43393 4.54856 4.61023 4.78042 4.83062 4.97126 5.13042 5.19903 5.31231 5.33187 5.48851 5.73257 6.08324 6.20461 6.79180 7.35415 8.89097 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.056274 B = 0.008348 C = 0.007809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 497.443291 B = 3353.155760 C = 3584.716514 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.966 3.034 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.533 4.533 8 H 0.055 0.945 9 C 0.032 3.968 10 C 0.058 3.942 11 H 0.081 0.919 12 C 0.030 3.970 13 O -0.394 6.394 14 C 0.246 3.754 15 H 0.087 0.913 16 C -0.186 4.186 17 C -0.169 4.169 18 C -0.141 4.141 19 O -0.386 6.386 20 H 0.265 0.735 21 H 0.026 0.974 22 H -0.003 1.003 23 H 0.107 0.893 24 H 0.075 0.925 25 H 0.116 0.884 26 H 0.091 0.909 27 H 0.105 0.895 28 H 0.121 0.879 29 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.802 -11.460 -2.847 13.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.190 1.190 5 H -0.205 1.205 6 H -0.199 1.199 7 C -0.571 4.571 8 H 0.073 0.927 9 C -0.005 4.005 10 C 0.001 3.999 11 H 0.099 0.901 12 C -0.046 4.046 13 O -0.315 6.315 14 C 0.151 3.849 15 H 0.104 0.896 16 C -0.204 4.204 17 C -0.206 4.206 18 C -0.178 4.178 19 O -0.307 6.307 20 H 0.074 0.926 21 H 0.044 0.956 22 H 0.015 0.985 23 H 0.125 0.875 24 H 0.094 0.906 25 H 0.134 0.866 26 H 0.110 0.890 27 H 0.123 0.877 28 H 0.139 0.861 29 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 6.661 -11.388 -3.053 13.542 hybrid contribution 0.024 1.190 0.205 1.208 sum 6.685 -10.198 -2.849 12.522 Atomic orbital electron populations 1.70075 1.07601 1.27840 1.51660 1.25910 0.95796 1.03196 0.94682 0.85388 0.78918 0.78780 0.77895 1.19007 1.20511 1.19863 1.21486 0.93271 0.91949 1.50435 0.92712 1.19037 0.93327 0.91870 0.96305 1.23918 0.93466 0.96044 0.86492 0.90144 1.24080 0.96106 0.89232 0.95217 1.88741 1.40159 1.38454 1.64161 1.23911 0.89302 0.76493 0.95196 0.89625 1.22366 1.07939 0.95943 0.94184 1.22938 0.94554 1.02446 1.00639 1.23042 0.97705 0.93317 1.03717 1.89553 1.72646 1.26424 1.42055 0.92623 0.95593 0.98471 0.87459 0.90649 0.86579 0.89016 0.87665 0.86126 0.88098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.64 13.29 21.45 0.28 -56.36 15 2 C 0.00 0.12 5.46 84.66 0.46 0.58 15 3 Si 0.97 45.06 29.54 68.60 2.03 47.08 15 4 H -0.27 -12.02 7.11 99.48 0.71 -11.31 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.27 -12.20 7.11 99.48 0.71 -11.49 15 7 C -0.53 -31.02 8.96 25.60 0.23 -30.79 15 8 H 0.05 3.15 7.74 -2.91 -0.02 3.13 15 9 C 0.03 1.68 4.63 29.85 0.14 1.82 15 10 C 0.06 2.48 3.36 31.08 0.10 2.58 15 11 H 0.08 3.24 8.14 -2.39 -0.02 3.22 15 12 C 0.03 1.06 7.66 72.47 0.56 1.61 15 13 O -0.39 -13.65 9.67 -125.98 -1.22 -14.87 15 14 C 0.25 8.50 4.26 71.98 0.31 8.80 15 15 H 0.09 2.64 8.14 -2.39 -0.02 2.62 15 16 C -0.19 -5.45 6.09 -10.80 -0.07 -5.52 15 17 C -0.17 -4.40 9.89 30.62 0.30 -4.09 15 18 C -0.14 -3.04 10.23 30.62 0.31 -2.72 15 19 O -0.39 -17.19 11.07 -125.98 -1.39 -18.59 15 20 H 0.26 15.06 8.31 -92.70 -0.77 14.29 15 21 H 0.03 1.40 8.14 -2.38 -0.02 1.38 15 22 H 0.00 -0.18 8.14 -2.39 -0.02 -0.20 15 23 H 0.11 3.07 8.14 -2.38 -0.02 3.05 15 24 H 0.08 2.74 7.85 -2.39 -0.02 2.72 15 25 H 0.12 3.44 8.14 -2.39 -0.02 3.42 15 26 H 0.09 2.64 7.06 -2.39 -0.02 2.62 15 27 H 0.10 2.40 8.14 -2.38 -0.02 2.38 15 28 H 0.12 1.98 8.14 -2.39 -0.02 1.96 15 29 H 0.10 2.07 8.14 -2.38 -0.02 2.05 15 Total: -1.00 -65.84 249.66 3.16 -62.68 By element: Atomic # 1 Polarization: 6.66 SS G_CDS: 1.12 Total: 7.78 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 2.35 Total: -27.73 kcal Atomic # 7 Polarization: -56.64 SS G_CDS: 0.28 Total: -56.36 kcal Atomic # 8 Polarization: -30.84 SS G_CDS: -2.61 Total: -33.46 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Total: -65.84 3.16 -62.68 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104739.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.752 kcal (2) G-P(sol) polarization free energy of solvation -65.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.161 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.683 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds