Wall clock time and date at job start Mon Mar 30 2020 02:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.28091 * 54.30445 * 10 9 7 12 12 C 1.54453 * 110.31647 * 176.41516 * 10 9 7 13 13 O 1.44834 * 102.89965 * 140.69915 * 12 10 9 14 14 C 1.44391 * 103.23038 * 323.39226 * 13 12 10 15 15 H 1.09004 * 110.10722 * 280.03868 * 14 13 12 16 16 C 1.52995 * 110.11298 * 158.46222 * 14 13 12 17 17 C 1.53003 * 117.50214 * 130.07299 * 16 14 13 18 18 C 1.52998 * 117.50290 * 61.44776 * 16 14 13 19 19 O 1.43884 * 110.32157 * 292.18225 * 10 9 7 20 20 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 22 22 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 23 23 H 1.09001 * 110.72936 * 259.05286 * 12 10 9 24 24 H 1.09003 * 110.73161 * 22.16594 * 12 10 9 25 25 H 1.09005 * 115.55100 * 275.77758 * 16 14 13 26 26 H 1.09005 * 117.49425 * 359.97438 * 17 16 14 27 27 H 1.08998 * 117.50249 * 145.01941 * 17 16 14 28 28 H 1.08997 * 117.50160 * 214.97932 * 18 16 14 29 29 H 1.09007 * 117.49620 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5854 -3.1914 -0.8307 12 6 5.5633 -2.6602 -0.0900 13 8 5.9230 -3.7389 0.8071 14 6 4.9593 -3.6156 1.8752 15 1 5.2609 -2.8252 2.5626 16 6 4.8316 -4.9434 2.6245 17 6 4.9347 -4.9062 4.1506 18 6 6.0820 -5.4851 3.3202 19 8 3.7074 -3.2777 1.2491 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6796 -0.8894 22 1 3.8746 -0.6807 0.8905 23 1 5.8871 -2.8803 -1.1073 24 1 5.9844 -1.7144 0.2511 25 1 4.1472 -5.6681 2.1835 26 1 5.0939 -3.9357 4.6208 27 1 4.3179 -5.6064 4.7139 28 1 6.2199 -6.5662 3.3373 29 1 6.9957 -4.8957 3.2437 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260104743.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:13 Heat of formation + Delta-G solvation = -70.043691 kcal Electronic energy + Delta-G solvation = -12722.703362 eV Core-core repulsion = 10418.764887 eV Total energy + Delta-G solvation = -2303.938475 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.93091 -36.80098 -34.57739 -33.04297 -31.04025 -27.45172 -25.19469 -22.99375 -22.27095 -20.71284 -20.32151 -16.93728 -16.65897 -16.36547 -15.37223 -14.83837 -14.35672 -13.94671 -13.30383 -13.17548 -12.46859 -11.92717 -11.86436 -11.63800 -11.53380 -11.38588 -10.56053 -10.44325 -10.28670 -10.18765 -9.78768 -9.67556 -9.29571 -8.89915 -8.54797 -6.03020 -4.00750 3.29117 3.36354 3.37282 3.57653 4.15842 4.30687 4.43763 4.92349 5.03099 5.09339 5.20666 5.31784 5.33825 5.50543 5.54878 5.64525 5.79033 5.91120 6.05230 6.12169 6.27114 6.29196 6.63447 6.92588 7.17916 7.60303 7.76754 8.54229 9.04232 9.57492 11.10611 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.051529 B = 0.008868 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.251539 B = 3156.636046 C = 3356.160021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.267 1.267 7 C -0.511 4.511 8 H 0.076 0.924 9 C -0.023 4.023 10 C 0.068 3.932 11 H 0.087 0.913 12 C 0.013 3.987 13 O -0.383 6.383 14 C 0.255 3.745 15 H 0.068 0.932 16 C -0.153 4.153 17 C -0.171 4.171 18 C -0.166 4.166 19 O -0.359 6.359 20 H 0.263 0.737 21 H 0.031 0.969 22 H 0.018 0.982 23 H 0.101 0.899 24 H 0.071 0.929 25 H 0.116 0.884 26 H 0.096 0.904 27 H 0.099 0.901 28 H 0.096 0.904 29 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.135 -6.481 4.002 14.327 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.094 0.906 9 C -0.060 4.060 10 C 0.011 3.989 11 H 0.105 0.895 12 C -0.063 4.063 13 O -0.303 6.303 14 C 0.159 3.841 15 H 0.085 0.915 16 C -0.171 4.171 17 C -0.208 4.208 18 C -0.203 4.203 19 O -0.279 6.279 20 H 0.073 0.927 21 H 0.049 0.951 22 H 0.036 0.964 23 H 0.119 0.881 24 H 0.089 0.911 25 H 0.134 0.866 26 H 0.115 0.885 27 H 0.117 0.883 28 H 0.114 0.886 29 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 11.940 -6.559 4.063 14.216 hybrid contribution 0.337 1.166 -0.047 1.215 sum 12.278 -5.392 4.016 13.998 Atomic orbital electron populations 1.69909 1.06234 1.26793 1.51148 1.25012 0.94753 0.98970 0.94744 0.86815 0.80259 0.83885 0.78503 1.20292 1.21282 1.19161 1.20986 0.88742 0.94743 1.50390 0.90608 1.19947 0.98688 0.90354 0.97010 1.23605 0.91841 0.96956 0.86511 0.89510 1.24455 0.95904 0.90643 0.95330 1.89357 1.53579 1.52092 1.35309 1.23732 0.77763 0.93861 0.88698 0.91508 1.22259 1.02281 0.98341 0.94252 1.22995 1.02032 1.03061 0.92674 1.22843 0.92979 1.00919 1.03533 1.89088 1.26259 1.78463 1.34131 0.92729 0.95132 0.96378 0.88111 0.91126 0.86602 0.88521 0.88277 0.88561 0.88569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.15 13.96 55.43 0.77 -27.38 15 2 C 0.07 1.95 5.47 -17.82 -0.10 1.85 15 3 Si 0.88 21.64 27.47 -169.99 -4.67 16.97 15 4 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 15 6 H -0.27 -6.20 6.54 56.52 0.37 -5.83 15 7 C -0.51 -14.83 9.52 -34.44 -0.33 -15.15 15 8 H 0.08 2.42 7.99 -52.49 -0.42 2.00 15 9 C -0.02 -0.54 3.66 -27.88 -0.10 -0.64 15 10 C 0.07 1.42 3.66 -25.97 -0.10 1.32 15 11 H 0.09 1.80 8.14 -51.93 -0.42 1.37 15 12 C 0.01 0.22 7.36 37.92 0.28 0.50 15 13 O -0.38 -6.71 11.47 -59.27 -0.68 -7.39 15 14 C 0.25 4.54 4.09 37.15 0.15 4.69 15 15 H 0.07 1.15 7.94 -51.93 -0.41 0.73 15 16 C -0.15 -2.30 5.80 -90.62 -0.53 -2.82 15 17 C -0.17 -2.09 10.18 -26.73 -0.27 -2.36 15 18 C -0.17 -1.97 10.20 -26.73 -0.27 -2.24 15 19 O -0.36 -7.88 10.81 -59.27 -0.64 -8.52 15 20 H 0.26 7.65 8.31 -40.82 -0.34 7.31 15 21 H 0.03 0.70 7.20 -51.93 -0.37 0.33 15 22 H 0.02 0.43 7.57 -51.93 -0.39 0.04 15 23 H 0.10 1.42 8.14 -51.93 -0.42 0.99 15 24 H 0.07 1.11 7.86 -51.93 -0.41 0.70 15 25 H 0.12 1.77 8.14 -51.93 -0.42 1.35 15 26 H 0.10 1.14 8.07 -51.93 -0.42 0.73 15 27 H 0.10 1.06 8.14 -51.93 -0.42 0.64 15 28 H 0.10 0.98 8.14 -51.93 -0.42 0.56 15 29 H 0.10 1.12 8.14 -51.92 -0.42 0.70 15 LS Contribution 248.18 15.07 3.74 3.74 Total: -1.00 -31.89 248.18 -6.87 -38.76 By element: Atomic # 1 Polarization: 2.81 SS G_CDS: -4.13 Total: -1.32 kcal Atomic # 6 Polarization: -13.59 SS G_CDS: -1.26 Total: -14.86 kcal Atomic # 7 Polarization: -28.15 SS G_CDS: 0.77 Total: -27.38 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: -1.32 Total: -15.91 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Total LS contribution 3.74 Total: 3.74 kcal Total: -31.89 -6.87 -38.76 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104743.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.285 kcal (2) G-P(sol) polarization free energy of solvation -31.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.044 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds