Wall clock time and date at job start Mon Mar 30 2020 02:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 119.99973 * 2 1 4 4 H 1.48506 * 109.47297 * 89.99710 * 3 2 1 5 5 H 1.48503 * 109.47261 * 329.99891 * 3 2 1 6 6 H 1.48500 * 109.47454 * 209.99884 * 3 2 1 7 7 C 1.37877 * 120.00089 * 180.02562 * 2 1 3 8 8 H 1.07991 * 120.00203 * 359.97438 * 7 2 1 9 9 C 1.50708 * 120.00008 * 180.02562 * 7 2 1 10 10 C 1.53000 * 109.46973 * 179.97438 * 9 7 2 11 11 H 1.08994 * 110.28091 * 54.30445 * 10 9 7 12 12 C 1.54453 * 110.31647 * 176.41516 * 10 9 7 13 13 O 1.44834 * 102.89965 * 140.69915 * 12 10 9 14 14 C 1.44391 * 103.23038 * 323.39226 * 13 12 10 15 15 H 1.09004 * 110.10722 * 280.03868 * 14 13 12 16 16 C 1.52995 * 110.11298 * 158.46222 * 14 13 12 17 17 C 1.53003 * 117.50214 * 130.07299 * 16 14 13 18 18 C 1.52998 * 117.50290 * 61.44776 * 16 14 13 19 19 O 1.43884 * 110.32157 * 292.18225 * 10 9 7 20 20 H 0.96997 * 119.99848 * 0.02562 * 1 2 3 21 21 H 1.08994 * 109.46697 * 300.00254 * 9 7 2 22 22 H 1.09000 * 109.47083 * 59.99509 * 9 7 2 23 23 H 1.09001 * 110.72936 * 259.05286 * 12 10 9 24 24 H 1.09003 * 110.73161 * 22.16594 * 12 10 9 25 25 H 1.09005 * 115.55100 * 275.77758 * 16 14 13 26 26 H 1.09005 * 117.49425 * 359.97438 * 17 16 14 27 27 H 1.08998 * 117.50249 * 145.01941 * 17 16 14 28 28 H 1.08997 * 117.50160 * 214.97932 * 18 16 14 29 29 H 1.09007 * 117.49620 * 359.97438 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 1.4466 2.6527 -0.7001 6 1 3.5467 1.4402 -0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0005 9 6 3.5116 -1.1940 0.0000 10 6 4.0216 -2.6365 -0.0001 11 1 3.5854 -3.1914 -0.8307 12 6 5.5633 -2.6602 -0.0900 13 8 5.9230 -3.7389 0.8071 14 6 4.9593 -3.6156 1.8752 15 1 5.2609 -2.8252 2.5626 16 6 4.8316 -4.9434 2.6245 17 6 4.9347 -4.9062 4.1506 18 6 6.0820 -5.4851 3.3202 19 8 3.7074 -3.2777 1.2491 20 1 -0.4850 0.8400 -0.0004 21 1 3.8752 -0.6796 -0.8894 22 1 3.8746 -0.6807 0.8905 23 1 5.8871 -2.8803 -1.1073 24 1 5.9844 -1.7144 0.2511 25 1 4.1472 -5.6681 2.1835 26 1 5.0939 -3.9357 4.6208 27 1 4.3179 -5.6064 4.7139 28 1 6.2199 -6.5662 3.3373 29 1 6.9957 -4.8957 3.2437 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260104743.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:13 Heat of formation + Delta-G solvation = -91.707160 kcal Electronic energy + Delta-G solvation = -12723.642760 eV Core-core repulsion = 10418.764887 eV Total energy + Delta-G solvation = -2304.877873 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.36422 -37.89972 -36.11683 -35.08533 -32.91748 -29.18761 -26.57344 -24.76653 -23.26275 -22.22065 -21.76703 -18.97434 -18.13757 -17.78462 -16.72100 -16.58405 -15.93696 -15.12052 -14.99974 -14.73232 -14.29391 -13.72966 -13.42923 -13.29905 -12.83501 -12.42332 -12.37191 -12.03718 -11.72417 -11.48638 -11.38456 -11.23338 -11.13417 -10.78835 -10.51377 -8.28659 -6.33517 1.35879 1.38373 1.49505 2.35641 2.39208 2.86435 3.06385 3.13746 3.67054 3.80857 3.89081 3.99702 4.09824 4.18366 4.24715 4.56211 4.61671 4.66039 4.74808 4.96057 4.96987 5.08872 5.20909 5.25704 5.35953 5.59736 6.12895 6.27851 6.73087 7.28995 8.88963 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.051529 B = 0.008868 C = 0.008341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 543.251539 B = 3156.636046 C = 3356.160021 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.954 5.954 2 C 0.000 4.000 3 Si 0.956 3.044 4 H -0.269 1.269 5 H -0.283 1.283 6 H -0.236 1.236 7 C -0.525 4.525 8 H 0.023 0.977 9 C -0.018 4.018 10 C 0.061 3.939 11 H 0.075 0.925 12 C 0.023 3.977 13 O -0.384 6.384 14 C 0.249 3.751 15 H 0.074 0.926 16 C -0.187 4.187 17 C -0.162 4.162 18 C -0.143 4.143 19 O -0.396 6.396 20 H 0.266 0.734 21 H 0.051 0.949 22 H 0.023 0.977 23 H 0.132 0.868 24 H 0.088 0.912 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.923 -5.748 4.398 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.196 4.196 3 Si 0.778 3.222 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.159 1.159 7 C -0.563 4.563 8 H 0.041 0.959 9 C -0.055 4.055 10 C 0.004 3.996 11 H 0.093 0.907 12 C -0.053 4.053 13 O -0.304 6.304 14 C 0.155 3.845 15 H 0.092 0.908 16 C -0.206 4.206 17 C -0.199 4.199 18 C -0.180 4.180 19 O -0.317 6.317 20 H 0.075 0.925 21 H 0.069 0.931 22 H 0.041 0.959 23 H 0.150 0.850 24 H 0.106 0.894 25 H 0.121 0.879 26 H 0.119 0.881 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 14.754 -5.851 4.458 16.486 hybrid contribution -0.610 0.834 -0.148 1.044 sum 14.144 -5.017 4.310 15.614 Atomic orbital electron populations 1.70087 1.08531 1.28207 1.52679 1.26095 0.95705 1.03740 0.94058 0.85588 0.79776 0.77668 0.79165 1.19466 1.20889 1.15916 1.21278 0.91751 0.92933 1.50318 0.95871 1.19880 0.94944 0.92897 0.97827 1.23543 0.95053 0.94884 0.86125 0.90673 1.24490 0.92319 0.91462 0.97042 1.89353 1.53235 1.52500 1.35361 1.23971 0.76392 0.95520 0.88627 0.90846 1.22240 1.05000 0.97379 0.95960 1.23136 1.02219 1.03762 0.90793 1.22960 0.92019 1.02155 1.00826 1.89060 1.29139 1.78720 1.34814 0.92483 0.93134 0.95867 0.85040 0.89351 0.87850 0.88131 0.86766 0.86555 0.87977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.39 13.96 21.45 0.30 -61.09 15 2 C 0.00 0.01 5.47 84.65 0.46 0.47 15 3 Si 0.96 43.94 27.47 68.60 1.88 45.83 15 4 H -0.27 -12.01 7.11 99.48 0.71 -11.30 15 5 H -0.28 -12.77 7.11 99.48 0.71 -12.06 15 6 H -0.24 -9.63 6.54 99.48 0.65 -8.98 15 7 C -0.52 -31.33 9.52 25.60 0.24 -31.08 15 8 H 0.02 1.56 7.99 -2.92 -0.02 1.54 15 9 C -0.02 -0.85 3.66 29.85 0.11 -0.74 15 10 C 0.06 2.53 3.66 31.09 0.11 2.64 15 11 H 0.08 3.19 8.14 -2.39 -0.02 3.17 15 12 C 0.02 0.71 7.36 72.48 0.53 1.24 15 13 O -0.38 -12.67 11.47 -126.00 -1.45 -14.12 15 14 C 0.25 8.67 4.09 71.98 0.29 8.96 15 15 H 0.07 2.42 7.94 -2.38 -0.02 2.40 15 16 C -0.19 -5.46 5.80 -10.80 -0.06 -5.52 15 17 C -0.16 -3.65 10.18 30.60 0.31 -3.33 15 18 C -0.14 -3.02 10.20 30.59 0.31 -2.71 15 19 O -0.40 -17.69 10.81 -126.00 -1.36 -19.05 15 20 H 0.27 15.88 8.31 -92.71 -0.77 15.11 15 21 H 0.05 2.17 7.20 -2.39 -0.02 2.15 15 22 H 0.02 1.06 7.57 -2.39 -0.02 1.04 15 23 H 0.13 3.22 8.14 -2.39 -0.02 3.20 15 24 H 0.09 2.43 7.86 -2.39 -0.02 2.41 15 25 H 0.10 3.21 8.14 -2.38 -0.02 3.19 15 26 H 0.10 2.17 8.07 -2.38 -0.02 2.16 15 27 H 0.11 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.12 2.00 8.14 -2.39 -0.02 1.98 15 29 H 0.10 2.06 8.14 -2.38 -0.02 2.04 15 Total: -1.00 -71.03 248.18 2.76 -68.27 By element: Atomic # 1 Polarization: 9.16 SS G_CDS: 1.06 Total: 10.22 kcal Atomic # 6 Polarization: -32.38 SS G_CDS: 2.32 Total: -30.06 kcal Atomic # 7 Polarization: -61.39 SS G_CDS: 0.30 Total: -61.09 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: -2.81 Total: -33.17 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.88 Total: 45.83 kcal Total: -71.03 2.76 -68.27 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104743.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.436 kcal (2) G-P(sol) polarization free energy of solvation -71.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds