Wall clock time and date at job start Mon Mar 30 2020 02:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08993 * 110.28540 * 304.34279 * 10 9 7 12 12 C 1.54454 * 110.32191 * 182.11378 * 10 9 7 13 13 O 1.44832 * 102.89882 * 219.30888 * 12 10 9 14 14 C 1.44383 * 103.23644 * 36.60826 * 13 12 10 15 15 H 1.09004 * 110.15977 * 79.98552 * 14 13 12 16 16 C 1.52997 * 110.11719 * 201.60238 * 14 13 12 17 17 C 1.52997 * 117.49704 * 5.49354 * 16 14 13 18 18 C 1.53005 * 117.49843 * 296.83265 * 16 14 13 19 19 O 1.43784 * 106.17384 * 320.78367 * 14 13 12 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09002 * 110.72827 * 337.65954 * 12 10 9 24 24 H 1.08998 * 110.72271 * 100.95285 * 12 10 9 25 25 H 1.09001 * 115.55148 * 151.16279 * 16 14 13 26 26 H 1.08998 * 117.50029 * 359.97438 * 17 16 14 27 27 H 1.09005 * 117.49955 * 145.02734 * 17 16 14 28 28 H 1.09000 * 117.49986 * 214.98043 * 18 16 14 29 29 H 1.09002 * 117.49689 * 359.97376 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9292 -3.5782 -0.8342 12 6 1.4939 -5.0105 -0.0369 13 8 2.2655 -5.8424 0.8633 14 6 2.6607 -4.9241 1.9050 15 1 1.8394 -4.7754 2.6061 16 6 3.8897 -5.4610 2.6413 17 6 4.5382 -6.7356 2.0974 18 6 3.7375 -6.7802 3.4013 19 8 2.9799 -3.6859 1.2475 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 0.4720 -4.8956 0.3246 24 1 1.5033 -5.4221 -1.0462 25 1 4.5475 -4.7056 3.0711 26 1 4.0890 -7.1918 1.2153 27 1 5.6226 -6.8189 2.1697 28 1 4.2955 -6.8928 4.3309 29 1 2.7617 -7.2653 3.3771 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260104747.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:15 Heat of formation + Delta-G solvation = -73.975775 kcal Electronic energy + Delta-G solvation = -12739.626038 eV Core-core repulsion = 10435.517055 eV Total energy + Delta-G solvation = -2304.108983 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.88959 -36.61691 -34.45124 -33.07970 -30.69713 -26.98050 -25.28569 -23.14773 -22.25835 -20.51837 -20.34633 -16.62736 -16.38491 -16.26810 -15.46244 -14.67800 -14.46002 -13.77358 -13.41147 -13.00123 -12.10975 -11.82584 -11.73283 -11.40092 -11.36647 -11.11621 -10.58704 -10.52523 -10.31726 -10.16667 -9.81484 -9.58466 -9.10499 -8.73101 -8.38938 -6.01068 -4.01732 3.32759 3.40063 3.46100 3.84062 4.07552 4.35004 4.47512 5.01906 5.07951 5.23830 5.32990 5.39887 5.45476 5.66251 5.71661 5.73354 5.86737 6.04989 6.20139 6.26698 6.36013 6.43566 6.79898 7.35654 7.59258 7.80807 7.97122 8.38400 9.03197 9.61653 11.10736 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.058440 B = 0.008349 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.007666 B = 3352.979579 C = 3621.786947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.894 3.106 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.508 4.508 8 H 0.059 0.941 9 C 0.013 3.987 10 C 0.061 3.939 11 H 0.080 0.920 12 C 0.016 3.984 13 O -0.387 6.387 14 C 0.256 3.744 15 H 0.072 0.928 16 C -0.157 4.157 17 C -0.165 4.165 18 C -0.173 4.173 19 O -0.364 6.364 20 H 0.260 0.740 21 H 0.023 0.977 22 H 0.031 0.969 23 H 0.073 0.927 24 H 0.098 0.902 25 H 0.120 0.880 26 H 0.104 0.896 27 H 0.090 0.910 28 H 0.094 0.906 29 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.792 -11.021 3.164 12.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.546 4.546 8 H 0.078 0.922 9 C -0.024 4.024 10 C 0.004 3.996 11 H 0.098 0.902 12 C -0.060 4.060 13 O -0.308 6.308 14 C 0.160 3.840 15 H 0.089 0.911 16 C -0.176 4.176 17 C -0.202 4.202 18 C -0.210 4.210 19 O -0.285 6.285 20 H 0.070 0.930 21 H 0.042 0.958 22 H 0.049 0.951 23 H 0.091 0.909 24 H 0.116 0.884 25 H 0.138 0.862 26 H 0.122 0.878 27 H 0.109 0.891 28 H 0.112 0.888 29 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 4.837 -10.973 3.224 12.418 hybrid contribution 0.162 1.071 -0.013 1.084 sum 4.999 -9.902 3.211 11.547 Atomic orbital electron populations 1.69961 1.06056 1.26573 1.51313 1.25005 0.94858 0.99336 0.95374 0.86489 0.80217 0.83565 0.77486 1.19653 1.21080 1.21031 1.21150 0.93269 0.90377 1.49829 0.92235 1.19476 0.93337 0.91590 0.98008 1.23834 0.94260 0.95304 0.86239 0.90220 1.24437 0.96050 0.90663 0.94875 1.89292 1.71041 1.33445 1.37025 1.23580 0.93565 0.77975 0.88854 0.91098 1.22381 0.99746 0.91884 1.03545 1.22878 0.98751 1.00626 0.97901 1.22938 1.02294 0.99895 0.95897 1.88982 1.68776 1.36225 1.34498 0.93048 0.95833 0.95072 0.90910 0.88386 0.86188 0.87768 0.89114 0.88752 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.00 13.29 55.43 0.74 -26.27 15 2 C 0.05 1.59 5.46 -17.82 -0.10 1.49 15 3 Si 0.89 22.03 29.54 -169.99 -5.02 17.01 15 4 H -0.27 -6.61 7.11 56.52 0.40 -6.21 15 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 15 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 15 7 C -0.51 -14.60 8.94 -34.44 -0.31 -14.91 15 8 H 0.06 1.72 7.74 -52.49 -0.41 1.31 15 9 C 0.01 0.33 4.60 -27.88 -0.13 0.20 15 10 C 0.06 1.31 3.68 -25.97 -0.10 1.21 15 11 H 0.08 1.69 8.14 -51.93 -0.42 1.27 15 12 C 0.02 0.28 7.36 37.92 0.28 0.56 15 13 O -0.39 -6.89 9.93 -59.28 -0.59 -7.48 15 14 C 0.26 4.66 4.26 37.16 0.16 4.82 15 15 H 0.07 1.27 8.14 -51.93 -0.42 0.85 15 16 C -0.16 -2.39 6.09 -90.62 -0.55 -2.95 15 17 C -0.16 -2.19 9.89 -26.69 -0.26 -2.45 15 18 C -0.17 -2.13 10.24 -26.69 -0.27 -2.40 15 19 O -0.36 -8.08 10.77 -59.28 -0.64 -8.72 15 20 H 0.26 7.35 8.31 -40.82 -0.34 7.01 15 21 H 0.02 0.64 8.14 -51.93 -0.42 0.22 15 22 H 0.03 0.82 8.14 -51.93 -0.42 0.39 15 23 H 0.07 1.25 7.86 -51.93 -0.41 0.84 15 24 H 0.10 1.47 8.14 -51.93 -0.42 1.05 15 25 H 0.12 1.80 8.14 -51.93 -0.42 1.37 15 26 H 0.10 1.48 7.06 -51.93 -0.37 1.11 15 27 H 0.09 1.05 8.14 -51.93 -0.42 0.62 15 28 H 0.09 0.97 8.14 -51.93 -0.42 0.55 15 29 H 0.09 1.15 8.14 -51.93 -0.42 0.73 15 LS Contribution 249.60 15.07 3.76 3.76 Total: -1.00 -30.85 249.60 -7.15 -38.00 By element: Atomic # 1 Polarization: 2.23 SS G_CDS: -4.12 Total: -1.89 kcal Atomic # 6 Polarization: -13.13 SS G_CDS: -1.28 Total: -14.41 kcal Atomic # 7 Polarization: -27.00 SS G_CDS: 0.74 Total: -26.27 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: -1.23 Total: -16.20 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -30.85 -7.15 -38.00 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104747.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.978 kcal (2) G-P(sol) polarization free energy of solvation -30.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.824 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.151 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds