Wall clock time and date at job start Mon Mar 30 2020 02:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47230 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.47301 * 300.00265 * 3 2 1 6 6 H 1.48498 * 109.47430 * 60.00111 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 H 1.08993 * 110.28540 * 304.34279 * 10 9 7 12 12 C 1.54454 * 110.32191 * 182.11378 * 10 9 7 13 13 O 1.44832 * 102.89882 * 219.30888 * 12 10 9 14 14 C 1.44383 * 103.23644 * 36.60826 * 13 12 10 15 15 H 1.09004 * 110.15977 * 79.98552 * 14 13 12 16 16 C 1.52997 * 110.11719 * 201.60238 * 14 13 12 17 17 C 1.52997 * 117.49704 * 5.49354 * 16 14 13 18 18 C 1.53005 * 117.49843 * 296.83265 * 16 14 13 19 19 O 1.43784 * 106.17384 * 320.78367 * 14 13 12 20 20 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 22 22 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 23 23 H 1.09002 * 110.72827 * 337.65954 * 12 10 9 24 24 H 1.08998 * 110.72271 * 100.95285 * 12 10 9 25 25 H 1.09001 * 115.55148 * 151.16279 * 16 14 13 26 26 H 1.08998 * 117.50029 * 359.97438 * 17 16 14 27 27 H 1.09005 * 117.49955 * 145.02734 * 17 16 14 28 28 H 1.09000 * 117.49986 * 214.98043 * 18 16 14 29 29 H 1.09002 * 117.49689 * 359.97376 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2125 6 1 1.8904 2.3965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 1 2.9292 -3.5782 -0.8342 12 6 1.4939 -5.0105 -0.0369 13 8 2.2655 -5.8424 0.8633 14 6 2.6607 -4.9241 1.9050 15 1 1.8394 -4.7754 2.6061 16 6 3.8897 -5.4610 2.6413 17 6 4.5382 -6.7356 2.0974 18 6 3.7375 -6.7802 3.4013 19 8 2.9799 -3.6859 1.2475 20 1 -0.4850 0.8400 0.0004 21 1 0.6245 -2.5529 0.8956 22 1 0.6244 -2.5609 -0.8844 23 1 0.4720 -4.8956 0.3246 24 1 1.5033 -5.4221 -1.0462 25 1 4.5475 -4.7056 3.0711 26 1 4.0890 -7.1918 1.2153 27 1 5.6226 -6.8189 2.1697 28 1 4.2955 -6.8928 4.3309 29 1 2.7617 -7.2653 3.3771 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260104747.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:15:15 Heat of formation + Delta-G solvation = -93.429742 kcal Electronic energy + Delta-G solvation = -12740.469625 eV Core-core repulsion = 10435.517055 eV Total energy + Delta-G solvation = -2304.952570 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 198.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.39123 -37.79562 -36.04603 -35.14624 -32.56726 -28.81357 -26.73860 -25.06147 -23.24887 -22.31895 -21.60475 -18.51791 -18.09470 -17.73075 -16.97803 -16.52177 -15.88998 -15.15238 -15.06803 -14.45948 -14.09952 -13.64285 -13.30546 -13.20439 -12.78147 -12.48964 -12.35683 -12.31411 -11.92775 -11.40726 -11.32956 -11.15608 -10.99545 -10.61102 -10.41679 -8.22639 -6.31465 1.38513 1.39355 1.53095 2.40079 2.62267 2.70209 3.04497 3.13445 3.73184 3.87340 3.94880 4.02745 4.10202 4.23595 4.42321 4.55189 4.64586 4.74583 4.78807 4.97651 5.11797 5.19604 5.31435 5.31597 5.52709 5.73564 6.11593 6.25342 6.80667 7.36386 8.89465 Molecular weight = 198.10amu Principal moments of inertia in cm(-1) A = 0.058440 B = 0.008349 C = 0.007729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 479.007666 B = 3352.979579 C = 3621.786947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.267 1.267 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.052 0.948 9 C 0.019 3.981 10 C 0.062 3.938 11 H 0.082 0.918 12 C 0.025 3.975 13 O -0.382 6.382 14 C 0.249 3.751 15 H 0.068 0.932 16 C -0.184 4.184 17 C -0.160 4.160 18 C -0.149 4.149 19 O -0.392 6.392 20 H 0.265 0.735 21 H -0.003 1.003 22 H 0.021 0.979 23 H 0.075 0.925 24 H 0.130 0.870 25 H 0.119 0.881 26 H 0.094 0.906 27 H 0.110 0.890 28 H 0.120 0.880 29 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.814 -11.691 3.440 13.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.204 1.204 7 C -0.569 4.569 8 H 0.070 0.930 9 C -0.019 4.019 10 C 0.005 3.995 11 H 0.100 0.900 12 C -0.052 4.052 13 O -0.302 6.302 14 C 0.154 3.846 15 H 0.085 0.915 16 C -0.202 4.202 17 C -0.197 4.197 18 C -0.186 4.186 19 O -0.314 6.314 20 H 0.073 0.927 21 H 0.015 0.985 22 H 0.039 0.961 23 H 0.093 0.907 24 H 0.148 0.852 25 H 0.137 0.863 26 H 0.113 0.887 27 H 0.129 0.871 28 H 0.139 0.861 29 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 5.861 -11.661 3.501 13.513 hybrid contribution -0.182 1.252 -0.078 1.267 sum 5.679 -10.410 3.423 12.342 Atomic orbital electron populations 1.70066 1.07535 1.27779 1.51871 1.25888 0.95787 1.03106 0.94772 0.85415 0.78903 0.78916 0.77919 1.19161 1.19914 1.20403 1.21484 0.93193 0.92064 1.50121 0.92965 1.19328 0.93695 0.92734 0.96100 1.23643 0.93707 0.95759 0.86415 0.90038 1.24417 0.95448 0.88656 0.96633 1.89294 1.71016 1.33043 1.36866 1.23794 0.95157 0.76995 0.88646 0.91483 1.22340 0.99234 0.93119 1.05505 1.22957 0.99998 0.98558 0.98168 1.23062 1.02504 0.96549 0.96514 1.88943 1.68884 1.38650 1.34915 0.92663 0.98511 0.96076 0.90695 0.85165 0.86346 0.88735 0.87138 0.86138 0.88503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.60 13.29 21.45 0.28 -56.32 15 2 C 0.00 0.12 5.46 84.65 0.46 0.58 15 3 Si 0.96 45.28 29.54 68.60 2.03 47.30 15 4 H -0.27 -12.24 7.11 99.48 0.71 -11.54 15 5 H -0.27 -12.32 7.11 99.48 0.71 -11.61 15 6 H -0.28 -12.75 7.11 99.48 0.71 -12.04 15 7 C -0.53 -31.02 8.94 25.60 0.23 -30.79 15 8 H 0.05 3.06 7.74 -2.91 -0.02 3.03 15 9 C 0.02 0.98 4.60 29.85 0.14 1.12 15 10 C 0.06 2.68 3.68 31.09 0.11 2.79 15 11 H 0.08 3.46 8.14 -2.39 -0.02 3.44 15 12 C 0.02 0.84 7.36 72.48 0.53 1.38 15 13 O -0.38 -13.08 9.93 -125.98 -1.25 -14.33 15 14 C 0.25 8.98 4.26 71.98 0.31 9.29 15 15 H 0.07 2.43 8.14 -2.38 -0.02 2.41 15 16 C -0.18 -5.35 6.09 -10.79 -0.07 -5.41 15 17 C -0.16 -3.87 9.89 30.62 0.30 -3.57 15 18 C -0.15 -3.26 10.24 30.62 0.31 -2.95 15 19 O -0.39 -17.61 10.77 -125.98 -1.36 -18.97 15 20 H 0.26 15.03 8.31 -92.71 -0.77 14.26 15 21 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 15 22 H 0.02 1.14 8.14 -2.38 -0.02 1.12 15 23 H 0.07 2.53 7.86 -2.39 -0.02 2.51 15 24 H 0.13 3.61 8.14 -2.39 -0.02 3.59 15 25 H 0.12 3.45 8.14 -2.39 -0.02 3.43 15 26 H 0.09 2.49 7.06 -2.39 -0.02 2.47 15 27 H 0.11 2.22 8.14 -2.38 -0.02 2.20 15 28 H 0.12 2.02 8.14 -2.39 -0.02 2.00 15 29 H 0.10 2.10 8.14 -2.39 -0.02 2.08 15 Total: -1.00 -65.89 249.60 3.15 -62.74 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: 1.12 Total: 7.12 kcal Atomic # 6 Polarization: -29.88 SS G_CDS: 2.33 Total: -27.55 kcal Atomic # 7 Polarization: -56.60 SS G_CDS: 0.28 Total: -56.32 kcal Atomic # 8 Polarization: -30.69 SS G_CDS: -2.61 Total: -33.30 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -65.89 3.15 -62.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260104747.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.691 kcal (2) G-P(sol) polarization free energy of solvation -65.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds