Wall clock time and date at job start Mon Mar 30 2020 02:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30695 * 1 3 3 Si 1.86800 * 119.99793 * 2 1 4 4 H 1.48504 * 109.47057 * 180.02562 * 3 2 1 5 5 H 1.48498 * 109.47564 * 300.00066 * 3 2 1 6 6 H 1.48500 * 109.47093 * 60.00681 * 3 2 1 7 7 C 1.40303 * 119.99939 * 180.02562 * 2 1 3 8 8 H 1.08006 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.40071 * 120.00132 * 0.02562 * 7 2 1 10 10 C 1.35034 * 119.99971 * 191.24459 * 9 7 2 11 11 C 1.50703 * 120.00083 * 7.43087 * 10 9 7 12 12 H 1.08993 * 109.30850 * 5.82973 * 11 10 9 13 13 C 1.52565 * 109.49282 * 125.50801 * 11 10 9 14 14 C 1.52579 * 110.84005 * 190.70339 * 13 11 10 15 15 C 1.53100 * 109.95536 * 289.36894 * 14 13 11 16 16 S 1.81747 * 108.83996 * 63.02764 * 15 14 13 17 17 C 1.53095 * 109.38950 * 246.07520 * 11 10 9 18 18 H 0.97000 * 119.99625 * 0.02562 * 1 2 3 19 19 H 1.08003 * 120.00144 * 11.23997 * 9 7 2 20 20 H 1.08000 * 120.00209 * 187.43611 * 10 9 7 21 21 H 1.09004 * 109.12852 * 70.36835 * 13 11 10 22 22 H 1.08995 * 109.20322 * 311.08199 * 13 11 10 23 23 H 1.09007 * 109.38788 * 169.22482 * 14 13 11 24 24 H 1.08998 * 109.31473 * 49.46646 * 14 13 11 25 25 H 1.09002 * 109.57774 * 303.21960 * 15 14 13 26 26 H 1.09006 * 109.57672 * 182.83317 * 15 14 13 27 27 H 1.08998 * 109.58010 * 57.02051 * 17 11 10 28 28 H 1.09000 * 109.57981 * 296.76612 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 3.7009 1.3464 -0.0006 5 1 1.8822 2.3965 -1.2124 6 1 1.8822 2.3964 1.2126 7 6 2.0085 -1.2151 -0.0005 8 1 3.0885 -1.2151 -0.0010 9 6 1.3081 -2.4281 -0.0016 10 6 1.9638 -3.5865 0.2259 11 6 3.4110 -3.5633 0.6454 12 1 3.7217 -2.5319 0.8115 13 6 3.5788 -4.3543 1.9392 14 6 4.9671 -4.1356 2.5331 15 6 6.0215 -4.8285 1.6659 16 16 6.0204 -4.0637 0.0172 17 6 4.2707 -4.1814 -0.4603 18 1 -0.4849 0.8401 -0.0004 19 1 0.2437 -2.4370 -0.1844 20 1 1.4511 -4.5296 0.1071 21 1 3.4410 -5.4151 1.7297 22 1 2.8259 -4.0303 2.6577 23 1 4.9988 -4.5493 3.5411 24 1 5.1775 -3.0669 2.5737 25 1 5.7823 -5.8883 1.5770 26 1 7.0044 -4.7111 2.1223 27 1 4.1097 -3.6411 -1.3932 28 1 3.9979 -5.2283 -0.5930 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260107475.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:37 Heat of formation + Delta-G solvation = -32.957781 kcal Electronic energy + Delta-G solvation = -10639.668502 eV Core-core repulsion = 8780.091065 eV Total energy + Delta-G solvation = -1859.577438 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.39718 -35.94726 -33.75712 -31.10086 -28.02225 -26.97084 -23.74176 -21.66068 -20.71348 -18.32738 -17.41962 -16.53137 -16.08370 -15.55141 -14.90941 -14.44391 -14.27480 -13.97287 -13.79506 -13.20012 -13.05356 -12.66719 -12.23160 -12.20486 -12.05782 -11.80659 -11.40146 -11.11561 -10.86205 -10.44890 -9.64096 -8.69638 -8.60000 -6.31425 0.95124 1.22218 1.36670 1.52161 1.67936 1.97592 2.21448 3.36510 3.87465 4.01413 4.11747 4.34282 4.42384 4.56489 4.66971 4.79526 4.90819 4.97353 5.14127 5.20397 5.27369 5.32218 5.50778 5.71845 5.91154 6.35947 6.65517 7.06500 7.20825 8.37025 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.042899 B = 0.009913 C = 0.009169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.532149 B = 2823.904197 C = 3053.076715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.856 5.856 2 C 0.028 3.972 3 Si 0.979 3.021 4 H -0.259 1.259 5 H -0.263 1.263 6 H -0.263 1.263 7 C -0.486 4.486 8 H 0.075 0.925 9 C 0.026 3.974 10 C -0.402 4.402 11 C -0.011 4.011 12 H 0.057 0.943 13 C -0.112 4.112 14 C -0.117 4.117 15 C -0.062 4.062 16 S -0.330 6.330 17 C -0.048 4.048 18 H 0.289 0.711 19 H 0.052 0.948 20 H 0.066 0.934 21 H 0.059 0.941 22 H 0.054 0.946 23 H 0.095 0.905 24 H 0.060 0.940 25 H 0.093 0.907 26 H 0.121 0.879 27 H 0.079 0.921 28 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.856 -4.496 3.816 10.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.484 5.484 2 C -0.185 4.185 3 Si 0.800 3.200 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.187 1.187 7 C -0.517 4.517 8 H 0.093 0.907 9 C 0.006 3.994 10 C -0.426 4.426 11 C -0.031 4.031 12 H 0.075 0.925 13 C -0.150 4.150 14 C -0.156 4.156 15 C -0.210 4.210 16 S -0.103 6.103 17 C -0.196 4.196 18 H 0.099 0.901 19 H 0.070 0.930 20 H 0.084 0.916 21 H 0.078 0.922 22 H 0.073 0.927 23 H 0.114 0.886 24 H 0.079 0.921 25 H 0.111 0.889 26 H 0.139 0.861 27 H 0.098 0.902 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 9.543 -3.937 3.225 10.815 hybrid contribution -1.333 0.164 0.312 1.379 sum 8.209 -3.772 3.538 9.703 Atomic orbital electron populations 1.69645 1.09157 1.30818 1.38816 1.27003 0.95572 1.05131 0.90827 0.85196 0.79362 0.76344 0.79108 1.18283 1.18807 1.18729 1.19858 0.94818 0.91522 1.45463 0.90703 1.19916 0.95157 0.93692 0.90659 1.22069 0.96768 0.94695 1.29042 1.19708 0.92584 0.98318 0.92500 0.92461 1.21499 0.96851 0.99729 0.96939 1.21715 0.93322 1.00996 0.99556 1.23460 1.03765 1.01686 0.92042 1.86633 1.15802 1.82557 1.25310 1.23509 0.90618 1.03481 1.01959 0.90100 0.93024 0.91585 0.92231 0.92697 0.88621 0.92103 0.88884 0.86102 0.90195 0.90301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.67 12.90 21.89 0.28 -46.39 15 2 C 0.03 1.44 5.50 85.36 0.47 1.91 15 3 Si 0.98 39.90 29.56 68.60 2.03 41.93 15 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 15 5 H -0.26 -10.22 7.11 99.48 0.71 -9.51 15 6 H -0.26 -10.16 7.11 99.48 0.71 -9.45 15 7 C -0.49 -26.96 8.42 23.22 0.20 -26.76 15 8 H 0.07 4.10 5.88 -2.91 -0.02 4.08 15 9 C 0.03 1.46 9.35 21.98 0.21 1.67 15 10 C -0.40 -19.84 8.89 24.95 0.22 -19.62 15 11 C -0.01 -0.48 2.07 -11.65 -0.02 -0.50 15 12 H 0.06 2.73 5.47 -2.39 -0.01 2.72 15 13 C -0.11 -3.90 4.90 30.31 0.15 -3.75 15 14 C -0.12 -3.25 5.75 30.49 0.18 -3.07 15 15 C -0.06 -1.57 6.45 72.02 0.46 -1.10 15 16 S -0.33 -11.07 22.33 -56.49 -1.26 -12.33 15 17 C -0.05 -1.81 5.71 72.01 0.41 -1.40 15 18 H 0.29 14.14 8.29 -92.71 -0.77 13.37 15 19 H 0.05 3.07 7.48 -2.91 -0.02 3.05 15 20 H 0.07 3.17 8.06 -2.91 -0.02 3.15 15 21 H 0.06 1.91 8.08 -2.39 -0.02 1.89 15 22 H 0.05 2.02 8.09 -2.39 -0.02 2.00 15 23 H 0.10 2.08 8.14 -2.38 -0.02 2.06 15 24 H 0.06 1.86 8.06 -2.39 -0.02 1.84 15 25 H 0.09 2.11 8.14 -2.39 -0.02 2.09 15 26 H 0.12 2.48 8.14 -2.38 -0.02 2.47 15 27 H 0.08 3.29 8.14 -2.39 -0.02 3.27 15 28 H 0.08 2.78 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -57.86 243.29 4.44 -53.42 By element: Atomic # 1 Polarization: 14.89 SS G_CDS: 1.12 Total: 16.01 kcal Atomic # 6 Polarization: -54.91 SS G_CDS: 2.27 Total: -52.64 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: 0.28 Total: -46.39 kcal Atomic # 14 Polarization: 39.90 SS G_CDS: 2.03 Total: 41.93 kcal Atomic # 16 Polarization: -11.07 SS G_CDS: -1.26 Total: -12.33 kcal Total: -57.86 4.44 -53.42 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260107475.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.462 kcal (2) G-P(sol) polarization free energy of solvation -57.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds