Wall clock time and date at job start Mon Mar 30 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48503 * 109.47093 * 270.00204 * 3 2 1 5 5 H 1.48498 * 109.46812 * 30.00062 * 3 2 1 6 6 H 1.48498 * 109.47070 * 149.99983 * 3 2 1 7 7 C 1.40303 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.40073 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.35029 * 120.00279 * 191.64156 * 9 7 2 11 11 C 1.50697 * 120.00038 * 7.43737 * 10 9 7 12 12 C 1.52579 * 109.22860 * 247.42143 * 11 10 9 13 13 C 1.53101 * 109.96030 * 169.00056 * 12 11 10 14 14 S 1.81749 * 108.83831 * 63.02583 * 13 12 11 15 15 C 1.81752 * 102.22115 * 306.73479 * 14 13 12 16 16 C 1.52582 * 109.22769 * 126.18334 * 11 10 9 17 17 H 0.96991 * 119.99823 * 359.97438 * 1 2 3 18 18 H 1.07998 * 119.99930 * 11.64173 * 9 7 2 19 19 H 1.08005 * 120.00517 * 187.43890 * 10 9 7 20 20 H 1.08998 * 109.18947 * 6.80197 * 11 10 9 21 21 H 1.09001 * 109.39198 * 289.15244 * 12 11 10 22 22 H 1.08999 * 109.39204 * 48.85470 * 12 11 10 23 23 H 1.08994 * 109.57457 * 303.22464 * 13 12 11 24 24 H 1.08994 * 109.57855 * 182.83064 * 13 12 11 25 25 H 1.08996 * 109.57645 * 293.46302 * 15 14 13 26 26 H 1.08997 * 109.68199 * 173.13317 * 15 14 13 27 27 H 1.09000 * 109.38899 * 311.14845 * 16 11 10 28 28 H 1.09001 * 109.39101 * 70.94849 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5385 1.4402 0.7000 7 6 2.0085 -1.2150 -0.0005 8 1 3.0885 -1.2151 -0.0001 9 6 1.3082 -2.4281 -0.0005 10 6 1.9626 -3.5856 0.2349 11 6 3.4075 -3.5607 0.6621 12 6 4.2703 -4.1510 -0.4494 13 6 5.7501 -3.8883 -0.1577 14 16 6.2056 -4.7418 1.3809 15 6 4.9546 -4.1264 2.5471 16 6 3.5644 -4.3624 1.9508 17 1 -0.4849 0.8400 0.0004 18 1 0.2448 -2.4378 -0.1889 19 1 1.4505 -4.5292 0.1171 20 1 3.7103 -2.5292 0.8419 21 1 4.0985 -5.2258 -0.5088 22 1 4.0015 -3.6900 -1.3998 23 1 5.9152 -2.8169 -0.0436 24 1 6.3574 -4.2679 -0.9793 25 1 5.1042 -3.0597 2.7138 26 1 5.0413 -4.6598 3.4937 27 1 2.8053 -4.0480 2.6671 28 1 3.4404 -5.4234 1.7344 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260120400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:30 Heat of formation + Delta-G solvation = -19.615577 kcal Electronic energy + Delta-G solvation = -10671.087192 eV Core-core repulsion = 8812.088316 eV Total energy + Delta-G solvation = -1858.998877 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.85166 -33.90011 -30.97726 -30.90175 -26.69250 -24.23617 -22.37650 -20.08792 -18.76828 -16.59567 -16.03417 -14.94910 -14.06265 -13.80852 -13.38625 -13.13677 -12.54679 -12.37982 -12.18285 -12.05953 -11.32960 -10.97356 -10.87927 -10.68276 -10.11089 -9.79424 -9.76478 -9.43045 -9.16236 -8.81621 -7.58525 -7.32460 -6.74396 -4.28071 2.21803 2.93185 2.94185 3.07814 3.12083 3.88002 3.97131 5.30084 5.33253 5.46107 5.53889 5.57064 5.86501 5.91947 6.11958 6.26507 6.49277 6.59837 6.63237 6.98489 7.13666 7.18128 7.24861 7.61770 7.87686 8.40020 8.67669 9.10809 9.26118 10.29188 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045314 B = 0.009607 C = 0.008884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.766088 B = 2913.947100 C = 3150.838825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.823 5.823 2 C 0.073 3.927 3 Si 0.906 3.094 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.464 4.464 8 H 0.074 0.926 9 C 0.054 3.946 10 C -0.414 4.414 11 C -0.020 4.020 12 C -0.109 4.109 13 C -0.073 4.073 14 S -0.303 6.303 15 C -0.072 4.072 16 C -0.108 4.108 17 H 0.280 0.720 18 H 0.076 0.924 19 H 0.064 0.936 20 H 0.070 0.930 21 H 0.059 0.941 22 H 0.070 0.930 23 H 0.079 0.921 24 H 0.092 0.908 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.069 0.931 28 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.153 -2.908 1.654 7.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.143 4.143 3 Si 0.731 3.269 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.494 4.494 8 H 0.092 0.908 9 C 0.034 3.966 10 C -0.436 4.436 11 C -0.038 4.038 12 C -0.148 4.148 13 C -0.221 4.221 14 S -0.078 6.078 15 C -0.220 4.220 16 C -0.147 4.147 17 H 0.090 0.910 18 H 0.094 0.906 19 H 0.082 0.918 20 H 0.088 0.912 21 H 0.078 0.922 22 H 0.089 0.911 23 H 0.097 0.903 24 H 0.110 0.890 25 H 0.098 0.902 26 H 0.110 0.890 27 H 0.088 0.912 28 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 7.787 -3.452 1.841 8.715 hybrid contribution -0.668 1.655 -0.217 1.798 sum 7.118 -1.797 1.624 7.519 Atomic orbital electron populations 1.69574 1.07671 1.29330 1.38378 1.26116 0.94752 1.01617 0.91841 0.86344 0.80467 0.80858 0.79200 1.19441 1.20305 1.18624 1.19641 0.94620 0.90739 1.44394 0.90811 1.19866 0.96015 0.92184 0.88537 1.21766 0.95433 0.95514 1.30906 1.19565 0.95274 0.98043 0.90930 1.21842 0.90756 1.01172 1.01049 1.23513 1.01283 1.01993 0.95281 1.86388 1.45345 1.65588 1.10497 1.23492 0.96693 1.03431 0.98430 1.21801 0.93143 1.00847 0.98914 0.90988 0.90622 0.91796 0.91181 0.92208 0.91124 0.90262 0.88995 0.90242 0.88969 0.91217 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -21.89 12.90 55.57 0.72 -21.17 15 2 C 0.07 1.87 5.50 -17.26 -0.09 1.78 15 3 Si 0.91 19.16 29.56 -169.99 -5.03 14.14 15 4 H -0.27 -5.59 7.11 56.52 0.40 -5.19 15 5 H -0.28 -5.74 7.11 56.52 0.40 -5.34 15 6 H -0.26 -5.49 7.11 56.52 0.40 -5.09 15 7 C -0.46 -12.35 8.40 -38.12 -0.32 -12.67 15 8 H 0.07 1.92 5.90 -52.49 -0.31 1.61 15 9 C 0.05 1.45 9.35 -40.03 -0.37 1.07 15 10 C -0.41 -10.03 8.82 -35.45 -0.31 -10.35 15 11 C -0.02 -0.41 1.95 -92.20 -0.18 -0.59 15 12 C -0.11 -2.03 5.04 -26.89 -0.14 -2.16 15 13 C -0.07 -1.18 6.46 37.21 0.24 -0.94 15 14 S -0.30 -4.99 22.33 -107.50 -2.40 -7.39 15 15 C -0.07 -1.17 6.46 37.21 0.24 -0.93 15 16 C -0.11 -1.99 5.04 -26.89 -0.14 -2.12 15 17 H 0.28 6.78 8.29 -40.82 -0.34 6.44 15 18 H 0.08 2.13 7.48 -52.49 -0.39 1.74 15 19 H 0.06 1.54 8.06 -52.48 -0.42 1.11 15 20 H 0.07 1.60 5.52 -51.93 -0.29 1.31 15 21 H 0.06 1.09 8.06 -51.93 -0.42 0.67 15 22 H 0.07 1.36 8.08 -51.93 -0.42 0.94 15 23 H 0.08 1.29 8.14 -51.93 -0.42 0.87 15 24 H 0.09 1.32 8.14 -51.93 -0.42 0.90 15 25 H 0.08 1.28 8.14 -51.93 -0.42 0.86 15 26 H 0.09 1.30 8.14 -51.93 -0.42 0.88 15 27 H 0.07 1.31 8.08 -51.93 -0.42 0.89 15 28 H 0.06 1.08 8.06 -51.93 -0.42 0.67 15 LS Contribution 243.22 15.07 3.67 3.67 Total: -1.00 -26.38 243.22 -8.03 -34.41 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.91 Total: 3.27 kcal Atomic # 6 Polarization: -25.85 SS G_CDS: -1.07 Total: -26.92 kcal Atomic # 7 Polarization: -21.89 SS G_CDS: 0.72 Total: -21.17 kcal Atomic # 14 Polarization: 19.16 SS G_CDS: -5.03 Total: 14.14 kcal Atomic # 16 Polarization: -4.99 SS G_CDS: -2.40 Total: -7.39 kcal Total LS contribution 3.67 Total: 3.67 kcal Total: -26.38 -8.03 -34.41 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.791 kcal (2) G-P(sol) polarization free energy of solvation -26.377 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.406 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds