Wall clock time and date at job start Mon Mar 30 2020 02:05:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30694 * 1 3 3 Si 1.86804 * 120.00063 * 2 1 4 4 H 1.48503 * 109.47093 * 270.00204 * 3 2 1 5 5 H 1.48498 * 109.46812 * 30.00062 * 3 2 1 6 6 H 1.48498 * 109.47070 * 149.99983 * 3 2 1 7 7 C 1.40303 * 120.00203 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00400 * 180.02562 * 7 2 1 9 9 C 1.40073 * 120.00067 * 359.97438 * 7 2 1 10 10 C 1.35029 * 120.00279 * 191.64156 * 9 7 2 11 11 C 1.50697 * 120.00038 * 7.43737 * 10 9 7 12 12 C 1.52579 * 109.22860 * 247.42143 * 11 10 9 13 13 C 1.53101 * 109.96030 * 169.00056 * 12 11 10 14 14 S 1.81749 * 108.83831 * 63.02583 * 13 12 11 15 15 C 1.81752 * 102.22115 * 306.73479 * 14 13 12 16 16 C 1.52582 * 109.22769 * 126.18334 * 11 10 9 17 17 H 0.96991 * 119.99823 * 359.97438 * 1 2 3 18 18 H 1.07998 * 119.99930 * 11.64173 * 9 7 2 19 19 H 1.08005 * 120.00517 * 187.43890 * 10 9 7 20 20 H 1.08998 * 109.18947 * 6.80197 * 11 10 9 21 21 H 1.09001 * 109.39198 * 289.15244 * 12 11 10 22 22 H 1.08999 * 109.39204 * 48.85470 * 12 11 10 23 23 H 1.08994 * 109.57457 * 303.22464 * 13 12 11 24 24 H 1.08994 * 109.57855 * 182.83064 * 13 12 11 25 25 H 1.08996 * 109.57645 * 293.46302 * 15 14 13 26 26 H 1.08997 * 109.68199 * 173.13317 * 15 14 13 27 27 H 1.09000 * 109.38899 * 311.14845 * 16 11 10 28 28 H 1.09001 * 109.39101 * 70.94849 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2410 1.6178 0.0000 4 1 2.4884 2.0465 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5385 1.4402 0.7000 7 6 2.0085 -1.2150 -0.0005 8 1 3.0885 -1.2151 -0.0001 9 6 1.3082 -2.4281 -0.0005 10 6 1.9626 -3.5856 0.2349 11 6 3.4075 -3.5607 0.6621 12 6 4.2703 -4.1510 -0.4494 13 6 5.7501 -3.8883 -0.1577 14 16 6.2056 -4.7418 1.3809 15 6 4.9546 -4.1264 2.5471 16 6 3.5644 -4.3624 1.9508 17 1 -0.4849 0.8400 0.0004 18 1 0.2448 -2.4378 -0.1889 19 1 1.4505 -4.5292 0.1171 20 1 3.7103 -2.5292 0.8419 21 1 4.0985 -5.2258 -0.5088 22 1 4.0015 -3.6900 -1.3998 23 1 5.9152 -2.8169 -0.0436 24 1 6.3574 -4.2679 -0.9793 25 1 5.1042 -3.0597 2.7138 26 1 5.0413 -4.6598 3.4937 27 1 2.8053 -4.0480 2.6671 28 1 3.4404 -5.4234 1.7344 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260120400.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:05:30 Heat of formation + Delta-G solvation = -32.542554 kcal Electronic energy + Delta-G solvation = -10671.647748 eV Core-core repulsion = 8812.088316 eV Total energy + Delta-G solvation = -1859.559432 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.50740 -35.80911 -32.83858 -32.32967 -28.40707 -26.08996 -23.79072 -21.72335 -20.70754 -18.35720 -17.60361 -16.72436 -15.51397 -15.43421 -15.06054 -14.55866 -14.25760 -13.86040 -13.74331 -13.54401 -13.04317 -12.69588 -12.52801 -12.28329 -11.85191 -11.50579 -11.42201 -11.15787 -10.84409 -10.49371 -9.60079 -8.68019 -8.62583 -6.30657 0.92517 1.24096 1.36213 1.49506 1.62283 1.95980 2.20433 3.37370 3.88525 4.05325 4.12613 4.23440 4.47565 4.49910 4.67718 4.83662 4.85551 5.07613 5.13189 5.14323 5.25150 5.30800 5.58106 5.74542 5.93059 6.37661 6.65078 7.08416 7.21145 8.38466 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045314 B = 0.009607 C = 0.008884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 617.766088 B = 2913.947100 C = 3150.838825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.026 3.974 3 Si 0.980 3.020 4 H -0.260 1.260 5 H -0.268 1.268 6 H -0.257 1.257 7 C -0.487 4.487 8 H 0.077 0.923 9 C 0.022 3.978 10 C -0.399 4.399 11 C -0.020 4.020 12 C -0.103 4.103 13 C -0.070 4.070 14 S -0.296 6.296 15 C -0.069 4.069 16 C -0.103 4.103 17 H 0.288 0.712 18 H 0.048 0.952 19 H 0.062 0.938 20 H 0.052 0.948 21 H 0.064 0.936 22 H 0.059 0.941 23 H 0.078 0.922 24 H 0.116 0.884 25 H 0.079 0.921 26 H 0.117 0.883 27 H 0.061 0.939 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.060 -2.677 2.039 9.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C -0.187 4.187 3 Si 0.801 3.199 4 H -0.185 1.185 5 H -0.193 1.193 6 H -0.181 1.181 7 C -0.517 4.517 8 H 0.095 0.905 9 C 0.002 3.998 10 C -0.421 4.421 11 C -0.039 4.039 12 C -0.142 4.142 13 C -0.218 4.218 14 S -0.071 6.071 15 C -0.217 4.217 16 C -0.142 4.142 17 H 0.098 0.902 18 H 0.066 0.934 19 H 0.080 0.920 20 H 0.070 0.930 21 H 0.083 0.917 22 H 0.077 0.923 23 H 0.097 0.903 24 H 0.134 0.866 25 H 0.098 0.902 26 H 0.135 0.865 27 H 0.079 0.921 28 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.691 -3.242 2.225 10.459 hybrid contribution -1.318 1.451 -0.339 1.989 sum 8.374 -1.791 1.886 8.768 Atomic orbital electron populations 1.69647 1.09257 1.30810 1.39045 1.27024 0.95564 1.05175 0.90895 0.85222 0.79038 0.75987 0.79626 1.18503 1.19269 1.18084 1.19801 0.94820 0.91382 1.45732 0.90488 1.19890 0.95012 0.93769 0.91142 1.22077 0.97322 0.94485 1.28210 1.19552 0.93305 0.97886 0.93139 1.21686 0.92134 1.00988 0.99385 1.23472 0.99643 1.02274 0.96362 1.86411 1.45039 1.65413 1.10211 1.23461 0.94924 1.03944 0.99382 1.21669 0.94703 1.00443 0.97356 0.90187 0.93394 0.92013 0.93009 0.91746 0.92271 0.90284 0.86570 0.90248 0.86452 0.92083 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -46.65 12.90 21.89 0.28 -46.37 15 2 C 0.03 1.34 5.50 85.36 0.47 1.81 15 3 Si 0.98 38.93 29.56 68.60 2.03 40.95 15 4 H -0.26 -9.92 7.11 99.48 0.71 -9.21 15 5 H -0.27 -10.14 7.11 99.48 0.71 -9.43 15 6 H -0.26 -9.91 7.11 99.48 0.71 -9.20 15 7 C -0.49 -26.45 8.40 23.22 0.20 -26.25 15 8 H 0.08 4.03 5.90 -2.91 -0.02 4.02 15 9 C 0.02 1.22 9.35 21.98 0.21 1.42 15 10 C -0.40 -19.62 8.82 24.95 0.22 -19.40 15 11 C -0.02 -0.84 1.95 -11.82 -0.02 -0.86 15 12 C -0.10 -3.68 5.04 30.49 0.15 -3.52 15 13 C -0.07 -2.09 6.46 72.02 0.46 -1.63 15 14 S -0.30 -8.87 22.33 -56.49 -1.26 -10.13 15 15 C -0.07 -2.06 6.46 72.02 0.46 -1.59 15 16 C -0.10 -3.62 5.04 30.49 0.15 -3.47 15 17 H 0.29 14.10 8.29 -92.71 -0.77 13.33 15 18 H 0.05 2.85 7.48 -2.91 -0.02 2.83 15 19 H 0.06 3.00 8.06 -2.91 -0.02 2.98 15 20 H 0.05 2.34 5.52 -2.39 -0.01 2.33 15 21 H 0.06 2.23 8.06 -2.39 -0.02 2.21 15 22 H 0.06 2.23 8.08 -2.39 -0.02 2.21 15 23 H 0.08 2.40 8.14 -2.39 -0.02 2.38 15 24 H 0.12 2.95 8.14 -2.39 -0.02 2.93 15 25 H 0.08 2.38 8.14 -2.39 -0.02 2.37 15 26 H 0.12 2.93 8.14 -2.39 -0.02 2.91 15 27 H 0.06 2.24 8.08 -2.39 -0.02 2.22 15 28 H 0.06 2.22 8.06 -2.39 -0.02 2.20 15 Total: -1.00 -56.42 243.22 4.47 -51.95 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: 1.12 Total: 17.09 kcal Atomic # 6 Polarization: -55.80 SS G_CDS: 2.30 Total: -53.50 kcal Atomic # 7 Polarization: -46.65 SS G_CDS: 0.28 Total: -46.37 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Atomic # 16 Polarization: -8.87 SS G_CDS: -1.26 Total: -10.13 kcal Total: -56.42 4.47 -51.95 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260120400.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.406 kcal (2) G-P(sol) polarization free energy of solvation -56.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.948 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds