Wall clock time and date at job start Mon Mar 30 2020 02:03:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86804 * 120.00025 * 2 1 4 4 H 1.48508 * 109.47020 * 270.00211 * 3 2 1 5 5 H 1.48496 * 109.47288 * 29.99521 * 3 2 1 6 6 H 1.48496 * 109.47430 * 150.00447 * 3 2 1 7 7 C 1.37875 * 120.00439 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00296 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99728 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47490 * 180.02562 * 9 7 2 11 11 H 1.09004 * 115.63032 * 334.87069 * 10 9 7 12 12 C 1.54063 * 117.55915 * 120.88251 * 10 9 7 13 13 H 1.08995 * 115.68605 * 214.14205 * 12 10 9 14 14 C 1.51756 * 114.88131 * 351.48043 * 12 10 9 15 15 C 1.52014 * 113.18886 * 95.09263 * 14 12 10 16 16 C 1.53448 * 109.57285 * 297.61587 * 15 14 12 17 17 S 1.82573 * 106.98783 * 77.18349 * 16 15 14 18 18 C 1.51668 * 59.59368 * 107.32697 * 12 10 9 19 19 H 1.08994 * 116.11979 * 106.20601 * 18 12 10 20 20 H 0.97001 * 120.00027 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.46954 * 60.00117 * 9 7 2 22 22 H 1.09000 * 109.47090 * 300.00716 * 9 7 2 23 23 H 1.09005 * 108.74045 * 216.05052 * 14 12 10 24 24 H 1.08991 * 108.73889 * 334.25643 * 14 12 10 25 25 H 1.09002 * 109.45291 * 57.65430 * 15 14 12 26 26 H 1.09003 * 109.45240 * 177.60754 * 15 14 12 27 27 H 1.09004 * 109.85432 * 196.18346 * 16 15 14 28 28 H 1.08999 * 109.85523 * 317.11917 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4403 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2452 -3.6620 -0.0005 11 1 3.2280 -3.4423 -0.4179 12 6 2.1756 -4.6594 1.1716 13 1 3.1289 -5.0801 1.4912 14 6 1.2496 -4.2516 2.3027 15 6 -0.1406 -4.8552 2.1854 16 6 -0.8120 -4.3536 0.9000 17 16 -0.0830 -5.2943 -0.4846 18 6 1.6904 -5.0612 -0.2080 19 1 2.3327 -5.7458 -0.7620 20 1 -0.4850 0.8400 -0.0004 21 1 0.6241 -2.5567 -0.8903 22 1 0.6247 -2.5570 0.8896 23 1 1.6905 -4.5688 3.2478 24 1 1.1587 -3.1655 2.3066 25 1 -0.0630 -5.9420 2.1543 26 1 -0.7390 -4.5585 3.0468 27 1 -1.8850 -4.5399 0.9458 28 1 -0.6266 -3.2865 0.7777 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260192709.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:03:32 Heat of formation + Delta-G solvation = 3.299431 kcal Electronic energy + Delta-G solvation = -11002.476431 eV Core-core repulsion = 9144.471224 eV Total energy + Delta-G solvation = -1858.005207 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.00582 -35.03137 -34.34040 -30.61134 -28.52130 -25.42378 -23.75658 -22.14561 -19.77637 -18.57926 -17.67363 -16.79789 -16.41993 -15.09977 -14.82110 -14.68479 -14.51516 -13.90482 -13.51820 -13.27204 -12.79085 -12.58813 -12.42214 -12.16578 -11.75157 -11.39578 -11.31484 -10.99912 -10.99435 -10.41106 -10.22849 -8.45064 -8.17160 -6.25552 0.95028 1.39904 1.40445 1.51101 1.62622 2.41341 2.74450 3.16059 3.82324 3.86821 3.91610 4.04377 4.16877 4.34938 4.59096 4.77266 4.84197 4.87072 5.05434 5.11759 5.17610 5.25918 5.40024 5.59100 5.74764 5.90096 6.30100 6.87820 7.41181 8.93419 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.048657 B = 0.010958 C = 0.010686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.314290 B = 2554.696520 C = 2619.740492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.004 3.996 3 Si 0.958 3.042 4 H -0.277 1.277 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.041 3.959 10 C -0.148 4.148 11 H 0.095 0.905 12 C -0.130 4.130 13 H 0.125 0.875 14 C -0.103 4.103 15 C -0.107 4.107 16 C -0.103 4.103 17 S -0.249 6.249 18 C -0.108 4.108 19 H 0.141 0.859 20 H 0.262 0.738 21 H -0.006 1.006 22 H 0.041 0.959 23 H 0.091 0.909 24 H 0.056 0.944 25 H 0.084 0.916 26 H 0.091 0.909 27 H 0.110 0.890 28 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.580 -8.991 4.523 10.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.194 4.194 3 Si 0.783 3.217 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.004 3.996 10 C -0.170 4.170 11 H 0.113 0.887 12 C -0.150 4.150 13 H 0.143 0.857 14 C -0.141 4.141 15 C -0.145 4.145 16 C -0.250 4.250 17 S -0.018 6.018 18 C -0.236 4.236 19 H 0.159 0.841 20 H 0.071 0.929 21 H 0.012 0.988 22 H 0.059 0.941 23 H 0.110 0.890 24 H 0.075 0.925 25 H 0.102 0.898 26 H 0.109 0.891 27 H 0.128 0.872 28 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 0.875 -9.485 3.677 10.210 hybrid contribution 0.911 1.794 0.468 2.065 sum 1.786 -7.691 4.145 8.918 Atomic orbital electron populations 1.70063 1.07430 1.27551 1.51734 1.25834 0.95727 1.02781 0.95018 0.85555 0.78781 0.79099 0.78259 1.20248 1.20695 1.18963 1.21651 0.93231 0.92349 1.50246 0.92839 1.18980 0.93474 0.90685 0.96422 1.22962 1.00817 0.90068 1.03135 0.88735 1.22303 1.01679 1.02334 0.88730 0.85682 1.20849 0.94719 1.00929 0.97562 1.21543 0.95587 1.01335 0.96057 1.24251 1.02675 1.02941 0.95141 1.86001 1.03594 1.67663 1.44532 1.23841 0.94578 1.02453 1.02747 0.84136 0.92880 0.98786 0.94145 0.89013 0.92527 0.89752 0.89097 0.87171 0.89434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.35 13.29 21.45 0.28 -55.06 15 2 C 0.00 0.25 5.46 84.66 0.46 0.71 15 3 Si 0.96 44.19 29.54 68.60 2.03 46.22 15 4 H -0.28 -12.52 7.11 99.48 0.71 -11.81 15 5 H -0.28 -12.66 7.11 99.48 0.71 -11.96 15 6 H -0.27 -11.74 7.11 99.48 0.71 -11.03 15 7 C -0.54 -30.32 9.08 25.60 0.23 -30.09 15 8 H 0.05 2.94 7.63 -2.91 -0.02 2.92 15 9 C 0.04 2.10 2.98 29.85 0.09 2.19 15 10 C -0.15 -6.17 5.75 -10.78 -0.06 -6.23 15 11 H 0.09 3.92 7.93 -2.38 -0.02 3.90 15 12 C -0.13 -4.29 6.06 -11.28 -0.07 -4.36 15 13 H 0.13 3.44 8.14 -2.39 -0.02 3.42 15 14 C -0.10 -3.29 5.25 29.86 0.16 -3.14 15 15 C -0.11 -3.09 5.77 30.42 0.18 -2.92 15 16 C -0.10 -3.63 6.05 72.13 0.44 -3.19 15 17 S -0.25 -9.13 21.59 -56.49 -1.22 -10.35 15 18 C -0.11 -3.80 6.35 29.81 0.19 -3.62 15 19 H 0.14 4.33 8.14 -2.39 -0.02 4.31 15 20 H 0.26 14.80 8.31 -92.71 -0.77 14.03 15 21 H -0.01 -0.35 7.84 -2.39 -0.02 -0.37 15 22 H 0.04 2.12 2.96 -2.39 -0.01 2.11 15 23 H 0.09 2.35 8.14 -2.38 -0.02 2.34 15 24 H 0.06 2.24 5.86 -2.39 -0.01 2.22 15 25 H 0.08 2.21 7.94 -2.39 -0.02 2.20 15 26 H 0.09 2.26 8.14 -2.39 -0.02 2.24 15 27 H 0.11 3.43 8.14 -2.38 -0.02 3.41 15 28 H 0.09 3.86 4.54 -2.39 -0.01 3.85 15 Total: -1.00 -61.92 232.20 3.84 -58.08 By element: Atomic # 1 Polarization: 10.62 SS G_CDS: 1.14 Total: 11.76 kcal Atomic # 6 Polarization: -52.25 SS G_CDS: 1.61 Total: -50.64 kcal Atomic # 7 Polarization: -55.35 SS G_CDS: 0.28 Total: -55.06 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Atomic # 16 Polarization: -9.13 SS G_CDS: -1.22 Total: -10.35 kcal Total: -61.92 3.84 -58.08 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260192709.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.375 kcal (2) G-P(sol) polarization free energy of solvation -61.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.076 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds