Wall clock time and date at job start Mon Mar 30 2020 02:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35029 * 1 3 3 C 1.40074 * 120.00084 * 2 1 4 4 H 1.08007 * 120.00005 * 204.89412 * 3 2 1 5 5 C 1.40306 * 119.99948 * 25.16849 * 3 2 1 6 6 N 1.30689 * 120.00203 * 14.20365 * 5 3 2 7 7 Si 1.86805 * 119.99804 * 194.20466 * 5 3 2 8 8 H 1.48502 * 109.46981 * 89.99828 * 7 5 3 9 9 H 1.48501 * 109.47079 * 210.00078 * 7 5 3 10 10 H 1.48503 * 109.47210 * 330.00090 * 7 5 3 11 11 C 1.50707 * 120.00147 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.38431 * 0.19487 * 11 2 1 13 13 C 1.52582 * 109.38982 * 240.49446 * 11 2 1 14 14 C 1.52585 * 110.72511 * 169.17299 * 13 11 2 15 15 C 1.53095 * 109.95306 * 70.67403 * 14 13 11 16 16 S 1.81748 * 108.84204 * 296.97368 * 15 14 13 17 17 C 1.53090 * 109.38861 * 119.99624 * 11 2 1 18 18 H 1.07998 * 120.00514 * 185.90458 * 1 2 3 19 19 H 1.08003 * 119.99657 * 5.89555 * 1 2 3 20 20 H 0.96996 * 119.99678 * 180.02562 * 6 5 3 21 21 H 1.09004 * 109.22434 * 289.49544 * 13 11 2 22 22 H 1.08999 * 109.22402 * 48.85224 * 13 11 2 23 23 H 1.09005 * 109.38854 * 310.52770 * 14 13 11 24 24 H 1.08999 * 109.38779 * 190.82181 * 14 13 11 25 25 H 1.09007 * 109.57294 * 177.16966 * 15 14 13 26 26 H 1.08997 * 109.68448 * 56.84931 * 15 14 13 27 27 H 1.08998 * 109.58300 * 302.98055 * 17 11 2 28 28 H 1.08997 * 109.57790 * 63.37484 * 17 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0555 1.2565 -0.3937 5 6 1.4491 2.3705 0.5168 6 7 0.3660 2.2759 1.2421 7 14 2.1961 4.0467 0.1680 8 1 1.6108 4.5996 -1.0799 9 1 1.9055 4.9634 1.2996 10 1 3.6660 3.9098 0.0068 11 6 2.1039 -1.3051 -0.0006 12 1 1.3943 -2.1326 -0.0045 13 6 2.9710 -1.3899 1.2520 14 6 3.5385 -2.7961 1.4217 15 6 4.5999 -3.0639 0.3514 16 16 3.8121 -3.0009 -1.2853 17 6 2.9832 -1.3837 -1.2513 18 1 -0.5401 -0.9303 0.0962 19 1 -0.5400 0.9304 -0.0961 20 1 -0.0500 3.0761 1.5990 21 1 3.7929 -0.6788 1.1684 22 1 2.3673 -1.1388 2.1241 23 1 2.7341 -3.5252 1.3240 24 1 3.9898 -2.8874 2.4097 25 1 5.0366 -4.0502 0.5087 26 1 5.3804 -2.3053 0.4104 27 1 2.3636 -1.2722 -2.1411 28 1 3.7306 -0.5909 -1.2226 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260218017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:55 Heat of formation + Delta-G solvation = -7.823770 kcal Electronic energy + Delta-G solvation = -10876.628846 eV Core-core repulsion = 9018.141300 eV Total energy + Delta-G solvation = -1858.487545 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -37.10650 -34.06334 -31.76757 -28.61420 -26.59479 -25.14260 -22.39894 -20.13457 -19.02533 -16.22554 -15.47122 -14.91600 -14.44486 -14.04374 -13.25768 -12.92804 -12.74717 -12.48196 -11.96869 -11.36825 -11.15892 -10.90037 -10.74689 -10.68062 -10.42724 -10.17439 -9.51402 -9.35502 -8.97100 -8.88086 -7.44323 -7.09737 -6.39658 -4.08883 2.26183 2.99602 3.10334 3.20379 3.22674 4.09907 4.19454 5.13097 5.20004 5.34322 5.50882 5.67909 5.88869 5.95759 5.98166 6.19201 6.30716 6.54024 6.59823 6.87978 7.01338 7.09623 7.38177 7.64830 8.20063 8.49669 9.01077 9.24642 9.46675 10.57833 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.049397 B = 0.010431 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.696878 B = 2683.667828 C = 2775.990584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.337 4.337 2 C 0.032 3.968 3 C -0.468 4.468 4 H 0.060 0.940 5 C 0.074 3.926 6 N -0.805 5.805 7 Si 0.893 3.107 8 H -0.273 1.273 9 H -0.282 1.282 10 H -0.268 1.268 11 C -0.045 4.045 12 H 0.062 0.938 13 C -0.109 4.109 14 C -0.123 4.123 15 C -0.072 4.072 16 S -0.312 6.312 17 C -0.048 4.048 18 H 0.039 0.961 19 H 0.093 0.907 20 H 0.269 0.731 21 H 0.062 0.938 22 H 0.069 0.931 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.093 0.907 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.132 -5.446 -0.240 8.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.378 4.378 2 C 0.029 3.971 3 C -0.500 4.500 4 H 0.078 0.922 5 C -0.140 4.140 6 N -0.433 5.433 7 Si 0.719 3.281 8 H -0.198 1.198 9 H -0.208 1.208 10 H -0.192 1.192 11 C -0.065 4.065 12 H 0.080 0.920 13 C -0.146 4.146 14 C -0.162 4.162 15 C -0.220 4.220 16 S -0.085 6.085 17 C -0.196 4.196 18 H 0.058 0.942 19 H 0.112 0.888 20 H 0.080 0.920 21 H 0.081 0.919 22 H 0.088 0.912 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.111 0.889 26 H 0.097 0.903 27 H 0.116 0.884 28 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.050 -6.102 -0.939 8.644 hybrid contribution 0.282 1.802 0.883 2.027 sum 6.332 -4.299 -0.057 7.654 Atomic orbital electron populations 1.23445 0.94567 0.97742 1.22079 1.18249 0.92929 0.90093 0.95828 1.19018 1.00594 0.93070 1.37335 0.92223 1.25707 0.94745 1.00265 0.93298 1.69836 1.18145 1.29772 1.25510 0.86573 0.80163 0.82736 0.78596 1.19806 1.20785 1.19191 1.20385 0.95626 0.98936 0.91570 0.91970 1.21423 0.99643 0.94305 0.99245 1.21795 0.97771 0.99318 0.97274 1.23335 0.99933 1.04643 0.94089 1.86505 1.67412 1.30872 1.23698 1.23546 1.00689 0.92550 1.02798 0.94244 0.88840 0.91961 0.91879 0.91195 0.91208 0.91696 0.88868 0.90312 0.88367 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.19 12.92 29.59 0.38 -8.81 15 2 C 0.03 0.83 4.54 -105.07 -0.48 0.35 15 3 C -0.47 -12.42 8.31 -38.12 -0.32 -12.74 15 4 H 0.06 1.53 7.02 -52.48 -0.37 1.16 15 5 C 0.07 1.96 5.16 -17.26 -0.09 1.87 15 6 N -0.80 -22.19 10.87 55.57 0.60 -21.58 15 7 Si 0.89 19.81 29.59 -169.99 -5.03 14.78 15 8 H -0.27 -6.02 7.11 56.52 0.40 -5.62 15 9 H -0.28 -6.16 7.11 56.52 0.40 -5.76 15 10 H -0.27 -5.83 7.11 56.52 0.40 -5.43 15 11 C -0.05 -0.96 2.20 -91.94 -0.20 -1.16 15 12 H 0.06 1.34 7.75 -51.93 -0.40 0.94 15 13 C -0.11 -2.09 4.61 -27.16 -0.13 -2.22 15 14 C -0.12 -1.89 5.75 -26.89 -0.15 -2.05 15 15 C -0.07 -1.05 6.45 37.21 0.24 -0.81 15 16 S -0.31 -5.35 22.33 -107.50 -2.40 -7.75 15 17 C -0.05 -0.93 5.50 37.20 0.20 -0.73 15 18 H 0.04 1.02 7.91 -52.49 -0.42 0.60 15 19 H 0.09 2.74 6.16 -52.48 -0.32 2.42 15 20 H 0.27 6.88 8.29 -40.82 -0.34 6.55 15 21 H 0.06 1.25 7.99 -51.93 -0.41 0.83 15 22 H 0.07 1.45 8.08 -51.93 -0.42 1.03 15 23 H 0.07 1.09 8.05 -51.93 -0.42 0.67 15 24 H 0.06 0.87 8.14 -51.93 -0.42 0.45 15 25 H 0.09 1.16 8.14 -51.92 -0.42 0.74 15 26 H 0.08 1.12 8.14 -51.93 -0.42 0.69 15 27 H 0.10 1.92 8.14 -51.93 -0.42 1.50 15 28 H 0.08 1.65 7.23 -51.93 -0.38 1.28 15 LS Contribution 240.60 15.07 3.63 3.63 Total: -1.00 -27.48 240.60 -7.70 -35.18 By element: Atomic # 1 Polarization: 6.01 SS G_CDS: -3.96 Total: 2.05 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -0.54 Total: -26.30 kcal Atomic # 7 Polarization: -22.19 SS G_CDS: 0.60 Total: -21.58 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -5.03 Total: 14.78 kcal Atomic # 16 Polarization: -5.35 SS G_CDS: -2.40 Total: -7.75 kcal Total LS contribution 3.63 Total: 3.63 kcal Total: -27.48 -7.70 -35.18 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.357 kcal (2) G-P(sol) polarization free energy of solvation -27.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds