Wall clock time and date at job start Mon Mar 30 2020 02:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35029 * 1 3 3 C 1.40074 * 120.00084 * 2 1 4 4 H 1.08007 * 120.00005 * 204.89412 * 3 2 1 5 5 C 1.40306 * 119.99948 * 25.16849 * 3 2 1 6 6 N 1.30689 * 120.00203 * 14.20365 * 5 3 2 7 7 Si 1.86805 * 119.99804 * 194.20466 * 5 3 2 8 8 H 1.48502 * 109.46981 * 89.99828 * 7 5 3 9 9 H 1.48501 * 109.47079 * 210.00078 * 7 5 3 10 10 H 1.48503 * 109.47210 * 330.00090 * 7 5 3 11 11 C 1.50707 * 120.00147 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.38431 * 0.19487 * 11 2 1 13 13 C 1.52582 * 109.38982 * 240.49446 * 11 2 1 14 14 C 1.52585 * 110.72511 * 169.17299 * 13 11 2 15 15 C 1.53095 * 109.95306 * 70.67403 * 14 13 11 16 16 S 1.81748 * 108.84204 * 296.97368 * 15 14 13 17 17 C 1.53090 * 109.38861 * 119.99624 * 11 2 1 18 18 H 1.07998 * 120.00514 * 185.90458 * 1 2 3 19 19 H 1.08003 * 119.99657 * 5.89555 * 1 2 3 20 20 H 0.96996 * 119.99678 * 180.02562 * 6 5 3 21 21 H 1.09004 * 109.22434 * 289.49544 * 13 11 2 22 22 H 1.08999 * 109.22402 * 48.85224 * 13 11 2 23 23 H 1.09005 * 109.38854 * 310.52770 * 14 13 11 24 24 H 1.08999 * 109.38779 * 190.82181 * 14 13 11 25 25 H 1.09007 * 109.57294 * 177.16966 * 15 14 13 26 26 H 1.08997 * 109.68448 * 56.84931 * 15 14 13 27 27 H 1.08998 * 109.58300 * 302.98055 * 17 11 2 28 28 H 1.08997 * 109.57790 * 63.37484 * 17 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 3.0555 1.2565 -0.3937 5 6 1.4491 2.3705 0.5168 6 7 0.3660 2.2759 1.2421 7 14 2.1961 4.0467 0.1680 8 1 1.6108 4.5996 -1.0799 9 1 1.9055 4.9634 1.2996 10 1 3.6660 3.9098 0.0068 11 6 2.1039 -1.3051 -0.0006 12 1 1.3943 -2.1326 -0.0045 13 6 2.9710 -1.3899 1.2520 14 6 3.5385 -2.7961 1.4217 15 6 4.5999 -3.0639 0.3514 16 16 3.8121 -3.0009 -1.2853 17 6 2.9832 -1.3837 -1.2513 18 1 -0.5401 -0.9303 0.0962 19 1 -0.5400 0.9304 -0.0961 20 1 -0.0500 3.0761 1.5990 21 1 3.7929 -0.6788 1.1684 22 1 2.3673 -1.1388 2.1241 23 1 2.7341 -3.5252 1.3240 24 1 3.9898 -2.8874 2.4097 25 1 5.0366 -4.0502 0.5087 26 1 5.3804 -2.3053 0.4104 27 1 2.3636 -1.2722 -2.1411 28 1 3.7306 -0.5909 -1.2226 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218017.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:55 Heat of formation + Delta-G solvation = -22.079186 kcal Electronic energy + Delta-G solvation = -10877.247007 eV Core-core repulsion = 9018.141300 eV Total energy + Delta-G solvation = -1859.105707 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.79327 -35.88352 -33.47161 -30.44017 -28.03141 -27.22313 -23.92952 -21.71469 -20.97211 -17.79241 -17.41378 -16.71143 -15.95151 -15.48107 -15.01538 -14.39864 -14.27809 -13.94533 -13.76733 -13.21700 -12.88700 -12.54455 -12.27994 -12.25794 -12.22346 -11.86043 -11.27673 -11.08731 -10.87501 -10.55751 -9.36315 -8.60878 -8.43035 -6.22187 0.90850 1.31165 1.39260 1.49920 1.62258 2.11467 2.28660 3.30944 3.82352 3.97867 4.06003 4.26050 4.37944 4.48665 4.66442 4.76877 4.85426 5.03761 5.07318 5.17265 5.29668 5.37817 5.46670 5.55381 6.09148 6.33385 6.92244 7.15655 7.42028 8.55695 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.049397 B = 0.010431 C = 0.010084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.696878 B = 2683.667828 C = 2775.990584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.375 4.375 2 C 0.035 3.965 3 C -0.490 4.490 4 H 0.067 0.933 5 C 0.027 3.973 6 N -0.836 5.836 7 Si 0.967 3.033 8 H -0.270 1.270 9 H -0.274 1.274 10 H -0.257 1.257 11 C -0.043 4.043 12 H 0.055 0.945 13 C -0.103 4.103 14 C -0.114 4.114 15 C -0.066 4.066 16 S -0.308 6.308 17 C -0.046 4.046 18 H 0.041 0.959 19 H 0.066 0.934 20 H 0.275 0.725 21 H 0.057 0.943 22 H 0.047 0.953 23 H 0.069 0.931 24 H 0.094 0.906 25 H 0.126 0.874 26 H 0.088 0.912 27 H 0.089 0.911 28 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.295 -5.746 -0.030 10.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.417 4.417 2 C 0.032 3.968 3 C -0.521 4.521 4 H 0.085 0.915 5 C -0.185 4.185 6 N -0.464 5.464 7 Si 0.790 3.210 8 H -0.195 1.195 9 H -0.199 1.199 10 H -0.180 1.180 11 C -0.063 4.063 12 H 0.073 0.927 13 C -0.141 4.141 14 C -0.153 4.153 15 C -0.214 4.214 16 S -0.081 6.081 17 C -0.194 4.194 18 H 0.060 0.940 19 H 0.084 0.916 20 H 0.086 0.914 21 H 0.076 0.924 22 H 0.066 0.934 23 H 0.088 0.912 24 H 0.113 0.887 25 H 0.144 0.856 26 H 0.107 0.893 27 H 0.107 0.893 28 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 8.212 -6.418 -0.731 10.448 hybrid contribution -0.382 1.875 0.859 2.097 sum 7.830 -4.543 0.127 9.053 Atomic orbital electron populations 1.23251 0.95448 0.96583 1.26378 1.18679 0.92798 0.92291 0.93000 1.19344 1.01053 0.93923 1.37819 0.91518 1.26656 0.95010 1.04295 0.92531 1.69949 1.19346 1.31256 1.25820 0.85431 0.79680 0.77429 0.78477 1.19490 1.19946 1.18031 1.20315 0.95917 0.96170 0.93914 0.92704 1.21334 0.98691 0.97128 0.96954 1.21711 0.98102 0.96172 0.99287 1.23485 0.99489 1.06897 0.91530 1.86509 1.67065 1.28390 1.26132 1.23281 1.00340 0.94548 1.01208 0.94034 0.91551 0.91420 0.92428 0.93442 0.91224 0.88723 0.85601 0.89314 0.89290 0.90267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -21.41 12.92 67.08 0.87 -20.54 15 2 C 0.04 1.87 4.54 -20.16 -0.09 1.78 15 3 C -0.49 -26.23 8.31 23.22 0.19 -26.03 15 4 H 0.07 3.40 7.02 -2.91 -0.02 3.38 15 5 C 0.03 1.44 5.16 85.37 0.44 1.88 15 6 N -0.84 -46.95 10.87 21.89 0.24 -46.72 15 7 Si 0.97 40.32 29.59 68.60 2.03 42.35 15 8 H -0.27 -11.09 7.11 99.48 0.71 -10.38 15 9 H -0.27 -11.03 7.11 99.48 0.71 -10.32 15 10 H -0.26 -10.19 7.11 99.48 0.71 -9.48 15 11 C -0.04 -1.84 2.20 -11.65 -0.03 -1.86 15 12 H 0.05 2.39 7.75 -2.39 -0.02 2.38 15 13 C -0.10 -3.88 4.61 30.32 0.14 -3.74 15 14 C -0.11 -3.17 5.75 30.49 0.18 -3.00 15 15 C -0.07 -1.68 6.45 72.01 0.46 -1.22 15 16 S -0.31 -9.87 22.33 -56.49 -1.26 -11.13 15 17 C -0.05 -1.75 5.50 72.01 0.40 -1.35 15 18 H 0.04 2.26 7.91 -2.91 -0.02 2.23 15 19 H 0.07 4.09 6.16 -2.91 -0.02 4.08 15 20 H 0.28 14.25 8.29 -92.71 -0.77 13.48 15 21 H 0.06 2.21 7.99 -2.38 -0.02 2.19 15 22 H 0.05 1.97 8.08 -2.39 -0.02 1.95 15 23 H 0.07 1.98 8.05 -2.38 -0.02 1.96 15 24 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 25 H 0.13 2.49 8.14 -2.38 -0.02 2.47 15 26 H 0.09 2.15 8.14 -2.39 -0.02 2.13 15 27 H 0.09 3.50 8.14 -2.39 -0.02 3.48 15 28 H 0.08 3.06 7.23 -2.39 -0.02 3.04 15 Total: -1.00 -59.56 240.60 4.68 -54.88 By element: Atomic # 1 Polarization: 13.59 SS G_CDS: 1.12 Total: 14.70 kcal Atomic # 6 Polarization: -56.65 SS G_CDS: 2.56 Total: -54.09 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.24 Total: -46.72 kcal Atomic # 14 Polarization: 40.32 SS G_CDS: 2.03 Total: 42.35 kcal Atomic # 16 Polarization: -9.87 SS G_CDS: -1.26 Total: -11.13 kcal Total: -59.56 4.68 -54.88 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218017.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.801 kcal (2) G-P(sol) polarization free energy of solvation -59.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.880 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds