Wall clock time and date at job start Mon Mar 30 2020 02:08:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35023 * 1 3 3 C 1.40072 * 120.00286 * 2 1 4 4 H 1.07998 * 120.00372 * 204.80289 * 3 2 1 5 5 C 1.40306 * 119.99693 * 24.81058 * 3 2 1 6 6 N 1.30690 * 120.00293 * 14.68108 * 5 3 2 7 7 Si 1.86798 * 120.00109 * 194.68768 * 5 3 2 8 8 H 1.48507 * 109.47210 * 59.99701 * 7 5 3 9 9 H 1.48498 * 109.47565 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47271 * 299.99734 * 7 5 3 11 11 C 1.50703 * 120.00176 * 180.02562 * 2 1 3 12 12 H 1.09001 * 109.38586 * 359.97438 * 11 2 1 13 13 C 1.52577 * 109.31254 * 119.75262 * 11 2 1 14 14 C 1.52586 * 110.72541 * 190.77380 * 13 11 2 15 15 C 1.53096 * 109.95814 * 289.32639 * 14 13 11 16 16 S 1.81744 * 108.84240 * 63.02243 * 15 14 13 17 17 C 1.53095 * 109.39150 * 240.20159 * 11 2 1 18 18 H 1.08005 * 120.00176 * 5.89589 * 1 2 3 19 19 H 1.08001 * 120.00257 * 185.90116 * 1 2 3 20 20 H 0.97005 * 120.00447 * 180.02562 * 6 5 3 21 21 H 1.08995 * 109.22394 * 311.09690 * 13 11 2 22 22 H 1.08997 * 109.22732 * 70.45366 * 13 11 2 23 23 H 1.09000 * 109.38569 * 169.17414 * 14 13 11 24 24 H 1.08998 * 109.30758 * 49.42273 * 14 13 11 25 25 H 1.09001 * 109.57358 * 303.21722 * 15 14 13 26 26 H 1.09000 * 109.67975 * 182.89821 * 15 14 13 27 27 H 1.09004 * 109.57436 * 296.73329 * 17 11 2 28 28 H 1.09001 * 109.57813 * 57.10997 * 17 11 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3502 0.0000 0.0000 3 6 2.0507 1.2130 0.0000 4 1 3.0559 1.2562 -0.3923 5 6 1.4462 2.3720 0.5099 6 7 0.3646 2.2790 1.2374 7 14 2.1875 4.0482 0.1487 8 1 2.2124 4.2726 -1.3191 9 1 1.3664 5.1026 0.7963 10 1 3.5726 4.1020 0.6813 11 6 2.1038 -1.3051 -0.0006 12 1 1.3943 -2.1326 -0.0005 13 6 2.9749 -1.3842 -1.2507 14 6 3.5450 -2.7890 -1.4236 15 6 4.6034 -3.0591 -0.3510 16 16 3.8105 -3.0030 1.2834 17 6 2.9794 -1.3870 1.2525 18 1 -0.5401 0.9304 -0.0961 19 1 -0.5400 -0.9303 0.0962 20 1 -0.0535 3.0803 1.5897 21 1 2.3736 -1.1309 -2.1238 22 1 3.7955 -0.6723 -1.1621 23 1 3.9993 -2.8762 -2.4106 24 1 2.7405 -3.5185 -1.3299 25 1 5.3815 -2.2977 -0.4058 26 1 5.0440 -4.0434 -0.5097 27 1 3.7258 -0.5929 1.2291 28 1 2.3569 -1.2795 2.1408 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260218020.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:58 Heat of formation + Delta-G solvation = -22.151745 kcal Electronic energy + Delta-G solvation = -10873.520058 eV Core-core repulsion = 9014.411205 eV Total energy + Delta-G solvation = -1859.108853 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -38.79444 -35.88621 -33.43471 -30.46284 -28.01852 -27.22675 -23.94383 -21.68063 -20.97648 -17.82166 -17.33924 -16.76425 -15.93540 -15.46692 -15.01302 -14.42507 -14.24028 -13.96524 -13.74210 -13.25285 -12.86368 -12.51121 -12.28156 -12.24772 -12.18378 -11.92958 -11.26552 -11.08931 -10.89440 -10.53923 -9.32632 -8.64854 -8.42602 -6.21866 0.90044 1.32669 1.39323 1.48814 1.62397 2.12734 2.28635 3.32391 3.83105 3.97670 4.05638 4.27460 4.39024 4.47869 4.66960 4.78536 4.87279 5.08088 5.10217 5.16747 5.28514 5.36310 5.46146 5.54343 6.09363 6.33425 6.92346 7.15902 7.42372 8.55665 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.048665 B = 0.010458 C = 0.010196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 575.227283 B = 2676.802739 C = 2745.573423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.376 4.376 2 C 0.036 3.964 3 C -0.492 4.492 4 H 0.068 0.932 5 C 0.027 3.973 6 N -0.836 5.836 7 Si 0.968 3.032 8 H -0.263 1.263 9 H -0.277 1.277 10 H -0.260 1.260 11 C -0.043 4.043 12 H 0.054 0.946 13 C -0.108 4.108 14 C -0.114 4.114 15 C -0.066 4.066 16 S -0.314 6.314 17 C -0.039 4.039 18 H 0.066 0.934 19 H 0.041 0.959 20 H 0.276 0.724 21 H 0.060 0.940 22 H 0.059 0.941 23 H 0.099 0.901 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.126 0.874 27 H 0.077 0.923 28 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.319 -5.703 -3.836 10.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.417 4.417 2 C 0.033 3.967 3 C -0.523 4.523 4 H 0.086 0.914 5 C -0.185 4.185 6 N -0.464 5.464 7 Si 0.790 3.210 8 H -0.188 1.188 9 H -0.202 1.202 10 H -0.184 1.184 11 C -0.063 4.063 12 H 0.073 0.927 13 C -0.146 4.146 14 C -0.152 4.152 15 C -0.214 4.214 16 S -0.087 6.087 17 C -0.187 4.187 18 H 0.085 0.915 19 H 0.059 0.941 20 H 0.086 0.914 21 H 0.079 0.921 22 H 0.077 0.923 23 H 0.117 0.883 24 H 0.088 0.912 25 H 0.107 0.893 26 H 0.144 0.856 27 H 0.095 0.905 28 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 8.229 -6.375 -2.854 10.793 hybrid contribution -0.378 1.869 -0.616 2.004 sum 7.851 -4.506 -3.470 9.694 Atomic orbital electron populations 1.23253 0.95469 0.96575 1.26448 1.18671 0.92797 0.92294 0.92959 1.19323 1.01031 0.93839 1.38108 0.91396 1.26675 0.94968 1.04376 0.92517 1.69946 1.19340 1.31333 1.25783 0.85484 0.79080 0.77049 0.79416 1.18776 1.20163 1.18395 1.20325 0.95936 0.96159 0.93924 0.92729 1.21400 0.98823 0.97401 0.96966 1.21713 0.98032 0.96250 0.99247 1.23506 0.99591 1.06915 0.91349 1.86537 1.66872 1.28400 1.26913 1.23220 1.00140 0.94262 1.01109 0.91524 0.94078 0.91411 0.92122 0.92272 0.88253 0.91210 0.89309 0.85578 0.90460 0.90602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.38 -21.47 12.92 67.08 0.87 -20.60 15 2 C 0.04 1.90 4.54 -20.16 -0.09 1.80 15 3 C -0.49 -26.31 8.17 23.22 0.19 -26.12 15 4 H 0.07 3.44 7.20 -2.91 -0.02 3.42 15 5 C 0.03 1.42 5.15 85.37 0.44 1.86 15 6 N -0.84 -47.21 10.87 21.89 0.24 -46.98 15 7 Si 0.97 40.31 29.59 68.60 2.03 42.34 15 8 H -0.26 -10.69 7.11 99.48 0.71 -9.98 15 9 H -0.28 -11.20 7.11 99.48 0.71 -10.49 15 10 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 11 C -0.04 -1.85 2.20 -11.65 -0.03 -1.87 15 12 H 0.05 2.39 7.75 -2.39 -0.02 2.37 15 13 C -0.11 -3.81 4.59 30.32 0.14 -3.67 15 14 C -0.11 -2.99 5.75 30.49 0.18 -2.81 15 15 C -0.07 -1.65 6.45 72.01 0.46 -1.19 15 16 S -0.31 -10.46 22.33 -56.49 -1.26 -11.72 15 17 C -0.04 -1.59 5.50 72.01 0.40 -1.19 15 18 H 0.07 4.11 6.15 -2.91 -0.02 4.09 15 19 H 0.04 2.24 7.91 -2.91 -0.02 2.22 15 20 H 0.28 14.38 8.29 -92.70 -0.77 13.61 15 21 H 0.06 2.21 8.08 -2.39 -0.02 2.19 15 22 H 0.06 2.11 7.44 -2.39 -0.02 2.09 15 23 H 0.10 2.02 8.14 -2.39 -0.02 2.01 15 24 H 0.07 1.89 8.05 -2.39 -0.02 1.87 15 25 H 0.09 2.12 8.14 -2.39 -0.02 2.10 15 26 H 0.13 2.45 8.14 -2.39 -0.02 2.43 15 27 H 0.08 3.20 7.85 -2.39 -0.02 3.19 15 28 H 0.08 3.36 8.14 -2.39 -0.02 3.34 15 Total: -1.00 -59.98 240.69 4.68 -55.30 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 1.12 Total: 14.84 kcal Atomic # 6 Polarization: -56.34 SS G_CDS: 2.55 Total: -53.79 kcal Atomic # 7 Polarization: -47.21 SS G_CDS: 0.24 Total: -46.98 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 2.03 Total: 42.34 kcal Atomic # 16 Polarization: -10.46 SS G_CDS: -1.26 Total: -11.72 kcal Total: -59.98 4.68 -55.30 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260218020.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.153 kcal (2) G-P(sol) polarization free energy of solvation -59.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds