Wall clock time and date at job start Mon Mar 30 2020 01:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 H 1.09005 * 110.53362 * 2 1 4 4 C 1.51580 * 110.73124 * 237.08197 * 2 1 3 5 5 O 1.21235 * 127.16320 * 61.36345 * 4 2 1 6 6 N 1.34775 * 105.68172 * 241.40847 * 4 2 1 7 7 C 1.46504 * 124.17481 * 179.97438 * 6 4 2 8 8 C 1.33786 * 111.64721 * 359.97438 * 6 4 2 9 9 O 1.21538 * 123.77312 * 179.97438 * 8 6 4 10 10 N 1.34532 * 112.45911 * 0.02562 * 8 6 4 11 11 C 1.37139 * 126.69373 * 179.97438 * 10 8 6 12 12 H 1.07998 * 119.99796 * 342.28677 * 11 10 8 13 13 C 1.38906 * 120.00359 * 162.29363 * 11 10 8 14 14 N 1.31454 * 119.99440 * 350.21914 * 13 11 10 15 15 Si 1.86794 * 120.00228 * 170.22570 * 13 11 10 16 16 H 1.48505 * 109.47482 * 90.00052 * 15 13 11 17 17 H 1.48504 * 109.46837 * 209.99612 * 15 13 11 18 18 H 1.48491 * 109.47092 * 329.99594 * 15 13 11 19 19 H 1.09002 * 109.47418 * 299.30111 * 1 2 3 20 20 H 1.08999 * 109.47092 * 59.29671 * 1 2 3 21 21 H 1.08996 * 109.47481 * 179.30179 * 1 2 3 22 22 H 1.09004 * 109.46863 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.47292 * 300.01790 * 7 6 4 24 24 H 1.08998 * 109.46949 * 60.02264 * 7 6 4 25 25 H 0.97002 * 119.99996 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9123 1.0208 0.0000 4 6 2.0665 -0.7704 -1.1901 5 8 1.8927 -0.5199 -2.3634 6 7 2.7762 -1.7925 -0.6724 7 6 3.4756 -2.7987 -1.4753 8 6 2.7632 -1.7748 0.6653 9 8 3.3325 -2.5957 1.3575 10 7 2.0485 -0.7473 1.1588 11 6 1.8427 -0.4532 2.4823 12 1 2.0186 -1.2060 3.2365 13 6 1.4079 0.8129 2.8530 14 7 1.3775 1.7830 1.9665 15 14 0.8666 1.1370 4.6112 16 1 2.0353 1.5742 5.4164 17 1 -0.1683 2.2020 4.6221 18 1 0.3024 -0.1074 5.1927 19 1 -0.3634 0.5029 0.8962 20 1 -0.3633 0.5247 -0.8836 21 1 -0.3634 -1.0275 -0.0125 22 1 3.9697 -3.5114 -0.8149 23 1 2.7576 -3.3244 -2.1049 24 1 4.2197 -2.3092 -2.1036 25 1 1.0742 2.6673 2.2253 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260310198.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:06 Heat of formation + Delta-G solvation = -56.499560 kcal Electronic energy + Delta-G solvation = -13066.946508 eV Core-core repulsion = 10660.055008 eV Total energy + Delta-G solvation = -2406.891500 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.06300 -39.38732 -37.40376 -36.26932 -33.93680 -31.63930 -29.30942 -26.57856 -25.31717 -22.90123 -21.24809 -19.68460 -17.97874 -17.70058 -17.19812 -16.66187 -16.08564 -15.48914 -15.22932 -15.05244 -14.37157 -13.63503 -13.58805 -13.42783 -13.36951 -12.80010 -12.63430 -12.45689 -12.07202 -11.42506 -11.26541 -10.93678 -10.67651 -9.93358 -8.39016 -6.05121 0.76482 1.44631 1.47386 1.55671 1.68302 2.18010 2.27501 2.74482 3.11547 3.41336 4.03529 4.31255 4.44968 4.46863 4.69770 4.73475 4.86651 4.97099 5.17102 5.33779 5.43155 6.04810 6.31120 6.58698 6.94229 7.16694 7.81938 8.66735 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.049397 B = 0.013932 C = 0.011509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.697037 B = 2009.318250 C = 2432.317026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.101 3.899 3 H 0.134 0.866 4 C 0.518 3.482 5 O -0.511 6.511 6 N -0.578 5.578 7 C 0.086 3.914 8 C 0.620 3.380 9 O -0.625 6.625 10 N -0.449 5.449 11 C -0.323 4.323 12 H 0.091 0.909 13 C 0.007 3.993 14 N -0.892 5.892 15 Si 1.000 3.000 16 H -0.275 1.275 17 H -0.268 1.268 18 H -0.268 1.268 19 H 0.074 0.926 20 H 0.081 0.919 21 H 0.045 0.955 22 H 0.090 0.910 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.874 -1.123 -3.112 3.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.006 4.006 3 H 0.151 0.849 4 C 0.307 3.693 5 O -0.385 6.385 6 N -0.323 5.323 7 C -0.055 4.055 8 C 0.323 3.677 9 O -0.509 6.509 10 N -0.172 5.172 11 C -0.449 4.449 12 H 0.109 0.891 13 C -0.196 4.196 14 N -0.529 5.529 15 Si 0.823 3.177 16 H -0.201 1.201 17 H -0.193 1.193 18 H -0.192 1.192 19 H 0.093 0.907 20 H 0.100 0.900 21 H 0.065 0.935 22 H 0.108 0.892 23 H 0.107 0.893 24 H 0.104 0.896 25 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.730 -1.210 -3.302 3.919 hybrid contribution 0.036 0.162 0.708 0.727 sum -1.694 -1.048 -2.594 3.271 Atomic orbital electron populations 1.21561 0.90337 1.01398 1.03715 1.22135 0.98413 0.98368 0.81686 0.84929 1.21352 0.77243 0.80559 0.90126 1.90654 1.59887 1.70744 1.17210 1.46273 1.49344 1.28881 1.07832 1.21921 0.97680 0.90730 0.95136 1.16195 0.83835 0.86114 0.81543 1.90723 1.53701 1.45171 1.61301 1.43496 1.43848 1.23902 1.05918 1.19467 1.47094 0.98384 0.79970 0.89106 1.26061 0.96163 0.93532 1.03830 1.69815 1.44534 1.02501 1.36085 0.84828 0.78192 0.78354 0.76370 1.20070 1.19260 1.19220 0.90731 0.90041 0.93542 0.89169 0.89348 0.89556 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.43 9.19 71.98 0.66 -3.77 15 2 C 0.10 4.53 2.85 44.37 0.13 4.65 15 3 H 0.13 6.35 6.62 -2.38 -0.02 6.33 15 4 C 0.52 21.90 7.66 87.94 0.67 22.58 15 5 O -0.51 -21.72 17.85 -2.89 -0.05 -21.77 15 6 N -0.58 -24.29 3.00 -796.64 -2.39 -26.68 15 7 C 0.09 2.71 10.88 127.77 1.39 4.10 15 8 C 0.62 31.12 8.26 179.44 1.48 32.61 15 9 O -0.63 -34.63 16.93 -3.83 -0.06 -34.70 15 10 N -0.45 -22.89 2.86 -631.79 -1.81 -24.70 15 11 C -0.32 -17.03 9.72 84.02 0.82 -16.21 15 12 H 0.09 4.97 7.84 -2.91 -0.02 4.95 15 13 C 0.01 0.34 4.75 84.91 0.40 0.74 15 14 N -0.89 -43.03 9.85 21.66 0.21 -42.81 15 15 Si 1.00 38.68 29.56 68.60 2.03 40.71 15 16 H -0.28 -10.62 7.11 99.48 0.71 -9.91 15 17 H -0.27 -9.80 7.11 99.48 0.71 -9.09 15 18 H -0.27 -10.29 7.11 99.48 0.71 -9.59 15 19 H 0.07 3.14 6.51 -2.39 -0.02 3.13 15 20 H 0.08 2.81 8.14 -2.39 -0.02 2.79 15 21 H 0.05 1.76 8.14 -2.39 -0.02 1.74 15 22 H 0.09 2.85 7.45 -2.38 -0.02 2.83 15 23 H 0.09 2.37 8.14 -2.39 -0.02 2.35 15 24 H 0.09 2.36 8.14 -2.39 -0.02 2.34 15 25 H 0.28 12.63 8.31 -92.71 -0.77 11.86 15 Total: -1.00 -60.21 224.00 4.68 -55.53 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 1.20 Total: 9.74 kcal Atomic # 6 Polarization: 39.13 SS G_CDS: 5.55 Total: 44.69 kcal Atomic # 7 Polarization: -90.21 SS G_CDS: -3.99 Total: -94.20 kcal Atomic # 8 Polarization: -56.35 SS G_CDS: -0.12 Total: -56.47 kcal Atomic # 14 Polarization: 38.68 SS G_CDS: 2.03 Total: 40.71 kcal Total: -60.21 4.68 -55.53 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310198.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.971 kcal (2) G-P(sol) polarization free energy of solvation -60.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds