Wall clock time and date at job start Mon Mar 30 2020 01:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09000 * 110.65323 * 2 1 4 4 C 1.51580 * 110.59982 * 122.91682 * 2 1 3 5 5 O 1.21239 * 127.15840 * 298.47845 * 4 2 1 6 6 N 1.34775 * 105.68624 * 118.52701 * 4 2 1 7 7 C 1.46501 * 124.17808 * 179.97438 * 6 4 2 8 8 C 1.33787 * 111.64374 * 0.02562 * 6 4 2 9 9 O 1.21538 * 123.77015 * 180.02562 * 8 6 4 10 10 N 1.34535 * 112.45818 * 359.97438 * 8 6 4 11 11 C 1.37142 * 126.68926 * 179.97438 * 10 8 6 12 12 H 1.08000 * 120.00122 * 147.93186 * 11 10 8 13 13 C 1.38905 * 119.99731 * 327.92434 * 11 10 8 14 14 N 1.31453 * 120.00421 * 340.13109 * 13 11 10 15 15 Si 1.86802 * 119.99909 * 160.12617 * 13 11 10 16 16 H 1.48498 * 109.47016 * 94.41885 * 15 13 11 17 17 H 1.48495 * 109.47586 * 214.42094 * 15 13 11 18 18 H 1.48501 * 109.47115 * 334.42227 * 15 13 11 19 19 H 1.09004 * 109.47094 * 182.91309 * 1 2 3 20 20 H 1.09000 * 109.47199 * 302.90615 * 1 2 3 21 21 H 1.08997 * 109.47806 * 62.91308 * 1 2 3 22 22 H 1.08993 * 109.47146 * 180.02562 * 7 6 4 23 23 H 1.08999 * 109.46780 * 300.02225 * 7 6 4 24 24 H 1.09007 * 109.46866 * 60.01454 * 7 6 4 25 25 H 0.96996 * 119.99783 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9144 1.0200 0.0000 4 6 2.0633 -0.7711 1.1911 5 8 1.8897 -0.5187 2.3642 6 7 2.7715 -1.7949 0.6749 7 6 3.4685 -2.8016 1.4793 8 6 2.7604 -1.7778 -0.6628 9 8 3.3289 -2.6002 -1.3538 10 7 2.0486 -0.7490 -1.1577 11 6 1.8460 -0.4544 -2.4817 12 1 0.9223 0.0079 -2.7969 13 6 2.8291 -0.7506 -3.4173 14 7 4.0709 -0.9384 -3.0290 15 14 2.3865 -0.8823 -5.2273 16 1 2.6286 0.4232 -5.8923 17 1 3.2255 -1.9270 -5.8675 18 1 0.9534 -1.2476 -5.3612 19 1 -0.3633 -1.0264 0.0522 20 1 -0.3633 0.5583 0.8628 21 1 -0.3634 0.4679 -0.9149 22 1 3.9625 -3.5152 0.8199 23 1 4.2125 -2.3127 2.1081 24 1 2.7490 -3.3258 2.1084 25 1 4.7572 -1.1455 -3.6824 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260310202.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:58:09 Heat of formation + Delta-G solvation = -30.020076 kcal Electronic energy + Delta-G solvation = -13082.656022 eV Core-core repulsion = 10676.912758 eV Total energy + Delta-G solvation = -2405.743264 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.13328 -37.46517 -35.07667 -34.35783 -32.19607 -29.56082 -27.76580 -24.52553 -23.60804 -20.93277 -19.78718 -17.35227 -16.35292 -15.73442 -15.14690 -14.77539 -14.25707 -13.60187 -13.51429 -12.96536 -12.80248 -12.04507 -11.97189 -11.91158 -11.51617 -11.27204 -10.93653 -10.68592 -10.32290 -9.64467 -9.07457 -8.77264 -8.70654 -7.55515 -6.25560 -3.95632 2.57727 3.20833 3.29301 3.33279 3.39818 4.10450 4.50556 4.66648 5.07036 5.18372 5.52250 5.69595 5.75088 5.82714 6.07941 6.14984 6.25184 6.49812 6.56611 6.90245 7.49516 8.11642 8.25096 8.75092 9.00593 9.35310 10.09152 10.81883 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.048815 B = 0.014210 C = 0.011721 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 573.457645 B = 1969.919509 C = 2388.345415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.075 3.925 3 H 0.108 0.892 4 C 0.518 3.482 5 O -0.514 6.514 6 N -0.579 5.579 7 C 0.096 3.904 8 C 0.641 3.359 9 O -0.536 6.536 10 N -0.447 5.447 11 C -0.327 4.327 12 H 0.096 0.904 13 C 0.051 3.949 14 N -0.816 5.816 15 Si 0.922 3.078 16 H -0.280 1.280 17 H -0.282 1.282 18 H -0.269 1.269 19 H 0.056 0.944 20 H 0.065 0.935 21 H 0.075 0.925 22 H 0.090 0.910 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.831 0.578 4.036 5.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.033 4.033 3 H 0.126 0.874 4 C 0.306 3.694 5 O -0.389 6.389 6 N -0.326 5.326 7 C -0.047 4.047 8 C 0.345 3.655 9 O -0.409 6.409 10 N -0.173 5.173 11 C -0.453 4.453 12 H 0.113 0.887 13 C -0.160 4.160 14 N -0.449 5.449 15 Si 0.748 3.252 16 H -0.206 1.206 17 H -0.208 1.208 18 H -0.194 1.194 19 H 0.075 0.925 20 H 0.084 0.916 21 H 0.094 0.906 22 H 0.108 0.892 23 H 0.081 0.919 24 H 0.081 0.919 25 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.387 0.186 4.087 5.312 hybrid contribution 0.093 -0.027 -0.760 0.766 sum -3.295 0.159 3.327 4.685 Atomic orbital electron populations 1.21746 0.92333 1.02534 1.02710 1.22063 0.96951 0.98188 0.86117 0.87419 1.21083 0.77425 0.81079 0.89770 1.90657 1.59928 1.70999 1.17335 1.46422 1.48914 1.27779 1.09520 1.21526 0.96653 0.91383 0.95102 1.15974 0.85331 0.84551 0.79661 1.90787 1.49140 1.41696 1.59287 1.42994 1.49189 1.21266 1.03839 1.18881 1.01927 1.46377 0.78068 0.88689 1.25314 0.94042 0.96580 1.00109 1.69975 1.00139 1.39386 1.35380 0.86038 0.78830 0.77818 0.82488 1.20588 1.20763 1.19352 0.92453 0.91634 0.90626 0.89167 0.91917 0.91902 0.92207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.26 9.42 37.16 0.35 -1.91 15 2 C 0.07 1.53 3.98 -68.21 -0.27 1.26 15 3 H 0.11 2.09 8.14 -51.93 -0.42 1.67 15 4 C 0.52 10.91 7.66 -10.55 -0.08 10.83 15 5 O -0.51 -11.03 17.85 5.59 0.10 -10.93 15 6 N -0.58 -12.81 3.00 -128.16 -0.39 -13.20 15 7 C 0.10 1.70 10.88 59.85 0.65 2.35 15 8 C 0.64 16.83 7.69 -88.02 -0.68 16.15 15 9 O -0.54 -15.88 14.46 5.33 0.08 -15.80 15 10 N -0.45 -11.28 2.80 -113.61 -0.32 -11.60 15 11 C -0.33 -8.60 9.76 -14.93 -0.15 -8.75 15 12 H 0.10 2.30 7.63 -52.49 -0.40 1.90 15 13 C 0.05 1.39 4.85 -17.47 -0.08 1.30 15 14 N -0.82 -23.85 11.21 55.49 0.62 -23.23 15 15 Si 0.92 20.75 29.60 -169.99 -5.03 15.71 15 16 H -0.28 -6.06 7.11 56.52 0.40 -5.66 15 17 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 18 H -0.27 -5.87 7.11 56.52 0.40 -5.47 15 19 H 0.06 0.98 8.14 -51.93 -0.42 0.55 15 20 H 0.06 0.94 8.14 -51.93 -0.42 0.52 15 21 H 0.07 1.21 7.81 -51.93 -0.41 0.81 15 22 H 0.09 1.62 7.45 -51.93 -0.39 1.24 15 23 H 0.06 1.00 8.14 -51.93 -0.42 0.58 15 24 H 0.06 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.27 7.45 8.31 -40.82 -0.34 7.11 15 LS Contribution 226.39 15.07 3.41 3.41 Total: -1.00 -32.49 226.39 -4.22 -36.71 By element: Atomic # 1 Polarization: 0.14 SS G_CDS: -2.44 Total: -2.30 kcal Atomic # 6 Polarization: 21.48 SS G_CDS: -0.26 Total: 21.22 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.08 Total: -48.03 kcal Atomic # 8 Polarization: -26.91 SS G_CDS: 0.18 Total: -26.73 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.71 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -32.49 -4.22 -36.71 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260310202.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.693 kcal (2) G-P(sol) polarization free energy of solvation -32.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds