Wall clock time and date at job start Mon Mar 30 2020 02:06:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30693 * 1 3 3 Si 1.86802 * 119.99957 * 2 1 4 4 H 1.48503 * 109.47232 * 269.99841 * 3 2 1 5 5 H 1.48498 * 109.47122 * 30.00403 * 3 2 1 6 6 H 1.48506 * 109.47046 * 150.00056 * 3 2 1 7 7 C 1.40304 * 119.99921 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00250 * 180.02562 * 7 2 1 9 9 C 1.40078 * 120.00208 * 359.97438 * 7 2 1 10 10 C 1.35033 * 119.99943 * 172.82388 * 9 7 2 11 11 C 1.50696 * 120.00216 * 356.00552 * 10 9 7 12 12 C 1.53000 * 109.47331 * 125.55381 * 11 10 9 13 13 H 1.08998 * 108.84865 * 307.87176 * 12 11 10 14 14 C 1.52939 * 108.88487 * 189.43328 * 12 11 10 15 15 C 1.55158 * 108.96019 * 209.10319 * 14 12 11 16 16 S 1.83991 * 100.90575 * 41.44091 * 15 14 12 17 17 C 1.53707 * 108.88886 * 66.45398 * 12 11 10 18 18 H 0.96998 * 119.99617 * 359.97438 * 1 2 3 19 19 H 1.07996 * 119.99373 * 353.10555 * 9 7 2 20 20 H 1.08002 * 119.99875 * 175.99818 * 10 9 7 21 21 H 1.09001 * 109.47165 * 245.55323 * 11 10 9 22 22 H 1.09003 * 109.47388 * 5.54953 * 11 10 9 23 23 H 1.08993 * 109.60663 * 329.03606 * 14 12 11 24 24 H 1.08997 * 109.60381 * 89.17918 * 14 12 11 25 25 H 1.09003 * 111.13289 * 283.53029 * 15 14 12 26 26 H 1.08996 * 111.13367 * 159.35059 * 15 14 12 27 27 H 1.09000 * 110.33925 * 242.49396 * 17 12 11 28 28 H 1.09007 * 110.33866 * 4.64009 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3069 0.0000 0.0000 3 14 2.2409 1.6178 0.0000 4 1 2.4885 2.0465 -1.4001 5 1 1.4384 2.6526 0.7001 6 1 3.5385 1.4402 0.7001 7 6 2.0084 -1.2151 -0.0005 8 1 3.0884 -1.2151 -0.0001 9 6 1.3081 -2.4282 -0.0005 10 6 1.9753 -3.5930 -0.1471 11 6 3.4607 -3.5837 -0.4007 12 6 4.1623 -4.4514 0.6461 13 1 3.8431 -4.1330 1.6385 14 6 5.6732 -4.2475 0.5260 15 6 6.3946 -5.5443 0.9793 16 16 5.3241 -6.8261 0.2071 17 6 3.7482 -5.9167 0.4364 18 1 -0.4849 0.8401 0.0004 19 1 0.2340 -2.4315 0.1121 20 1 1.4443 -4.5313 -0.0825 21 1 3.6619 -3.9809 -1.3957 22 1 3.8342 -2.5618 -0.3351 23 1 5.9315 -4.0284 -0.5100 24 1 5.9817 -3.4167 1.1605 25 1 6.3947 -5.6347 2.0655 26 1 7.4090 -5.5887 0.5831 27 1 3.2193 -6.2901 1.3133 28 1 3.1223 -6.0102 -0.4511 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260423505.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:06:27 Heat of formation + Delta-G solvation = -15.759026 kcal Electronic energy + Delta-G solvation = -10422.395959 eV Core-core repulsion = 8563.564315 eV Total energy + Delta-G solvation = -1858.831644 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -36.86042 -34.20455 -31.83704 -29.41427 -26.49158 -24.92228 -22.86214 -19.58366 -18.63598 -16.51760 -16.17400 -15.10748 -14.75056 -13.95531 -13.56947 -12.89860 -12.83050 -12.16641 -11.75642 -11.61191 -11.40866 -11.27632 -10.98210 -10.63880 -10.20949 -10.15778 -9.79027 -9.46302 -9.31480 -8.86224 -7.59836 -7.46271 -6.73145 -4.25071 2.17926 2.65315 2.95462 3.08682 3.12875 3.90226 3.98307 4.93411 5.06489 5.35747 5.41140 5.53610 5.56806 5.74613 5.94521 6.10052 6.33964 6.44853 6.61111 6.82228 7.11891 7.18151 7.28292 7.60841 7.87660 8.41683 8.70593 9.12905 9.28344 10.30780 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.063016 B = 0.007596 C = 0.006914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 444.227102 B = 3685.490186 C = 4048.547385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.072 3.928 3 Si 0.908 3.092 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.262 1.262 7 C -0.465 4.465 8 H 0.077 0.923 9 C 0.052 3.948 10 C -0.426 4.426 11 C -0.032 4.032 12 C -0.093 4.093 13 H 0.074 0.926 14 C -0.121 4.121 15 C -0.063 4.063 16 S -0.337 6.337 17 C -0.040 4.040 18 H 0.279 0.721 19 H 0.077 0.923 20 H 0.064 0.936 21 H 0.030 0.970 22 H 0.066 0.934 23 H 0.075 0.925 24 H 0.076 0.924 25 H 0.084 0.916 26 H 0.098 0.902 27 H 0.080 0.920 28 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.423 -4.230 1.833 9.602 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.451 5.451 2 C -0.144 4.144 3 Si 0.733 3.267 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.032 3.968 10 C -0.448 4.448 11 C -0.069 4.069 12 C -0.113 4.113 13 H 0.093 0.907 14 C -0.160 4.160 15 C -0.211 4.211 16 S -0.112 6.112 17 C -0.188 4.188 18 H 0.090 0.910 19 H 0.095 0.905 20 H 0.082 0.918 21 H 0.048 0.952 22 H 0.084 0.916 23 H 0.093 0.907 24 H 0.094 0.906 25 H 0.103 0.897 26 H 0.116 0.884 27 H 0.099 0.901 28 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 8.453 -5.154 1.350 9.992 hybrid contribution -0.067 1.825 0.548 1.906 sum 8.386 -3.329 1.897 9.220 Atomic orbital electron populations 1.69577 1.07696 1.29315 1.38497 1.26128 0.94761 1.01674 0.91827 0.86318 0.80410 0.80768 0.79180 1.19470 1.20361 1.18608 1.19708 0.94751 0.90733 1.44352 0.90559 1.19883 0.96332 0.92252 0.88328 1.21899 0.93882 0.95417 1.33573 1.20153 0.95070 0.97839 0.93873 1.21749 0.93160 0.93633 1.02755 0.90747 1.22536 0.94841 0.96124 1.02539 1.24297 1.00050 0.94551 1.02181 1.87561 1.08938 1.33800 1.80883 1.24064 0.93972 0.95563 1.05208 0.91005 0.90536 0.91810 0.95155 0.91607 0.90650 0.90561 0.89691 0.88394 0.90109 0.88129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -22.02 12.88 55.57 0.72 -21.31 15 2 C 0.07 1.86 5.50 -17.26 -0.09 1.76 15 3 Si 0.91 19.12 29.56 -169.99 -5.03 14.10 15 4 H -0.27 -5.60 7.11 56.52 0.40 -5.20 15 5 H -0.28 -5.72 7.11 56.52 0.40 -5.32 15 6 H -0.26 -5.42 7.11 56.52 0.40 -5.02 15 7 C -0.47 -12.46 8.62 -38.12 -0.33 -12.79 15 8 H 0.08 1.97 5.51 -52.49 -0.29 1.69 15 9 C 0.05 1.41 9.38 -40.03 -0.38 1.03 15 10 C -0.43 -10.34 9.13 -35.45 -0.32 -10.67 15 11 C -0.03 -0.67 4.52 -27.88 -0.13 -0.80 15 12 C -0.09 -1.64 2.65 -90.28 -0.24 -1.88 15 13 H 0.07 1.38 8.12 -51.93 -0.42 0.96 15 14 C -0.12 -1.79 5.78 -25.62 -0.15 -1.94 15 15 C -0.06 -0.83 7.52 38.30 0.29 -0.54 15 16 S -0.34 -5.36 23.23 -107.50 -2.50 -7.85 15 17 C -0.04 -0.68 6.43 37.52 0.24 -0.44 15 18 H 0.28 6.80 8.29 -40.82 -0.34 6.46 15 19 H 0.08 2.17 7.44 -52.49 -0.39 1.78 15 20 H 0.06 1.51 7.57 -52.49 -0.40 1.11 15 21 H 0.03 0.63 8.10 -51.93 -0.42 0.21 15 22 H 0.07 1.46 5.28 -51.93 -0.27 1.19 15 23 H 0.07 1.13 7.83 -51.93 -0.41 0.72 15 24 H 0.08 1.04 8.14 -51.93 -0.42 0.62 15 25 H 0.08 1.02 8.14 -51.93 -0.42 0.60 15 26 H 0.10 1.11 8.14 -51.93 -0.42 0.69 15 27 H 0.08 1.30 8.14 -51.93 -0.42 0.87 15 28 H 0.10 1.79 7.17 -51.92 -0.37 1.42 15 LS Contribution 244.39 15.07 3.68 3.68 Total: -1.00 -26.84 244.39 -8.03 -34.86 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.80 Total: 2.77 kcal Atomic # 6 Polarization: -25.15 SS G_CDS: -1.11 Total: -26.26 kcal Atomic # 7 Polarization: -22.02 SS G_CDS: 0.72 Total: -21.31 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.03 Total: 14.10 kcal Atomic # 16 Polarization: -5.36 SS G_CDS: -2.50 Total: -7.85 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -26.84 -8.03 -34.86 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260423505.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.104 kcal (2) G-P(sol) polarization free energy of solvation -26.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.027 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds