Wall clock time and date at job start Mon Mar 30 2020 02:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35030 * 1 3 3 C 1.40070 * 119.99817 * 2 1 4 4 H 1.08001 * 120.00069 * 211.28427 * 3 2 1 5 5 C 1.40303 * 119.99966 * 31.28908 * 3 2 1 6 6 N 1.30686 * 120.00377 * 21.74599 * 5 3 2 7 7 Si 1.86811 * 120.00101 * 201.74886 * 5 3 2 8 8 H 1.48504 * 109.46837 * 359.97438 * 7 5 3 9 9 H 1.48493 * 109.46995 * 119.99524 * 7 5 3 10 10 H 1.48492 * 109.46940 * 239.99986 * 7 5 3 11 11 C 1.50698 * 119.99958 * 180.02562 * 2 1 3 12 12 H 1.08996 * 109.57521 * 349.74015 * 11 2 1 13 13 C 1.53094 * 109.57712 * 109.99813 * 11 2 1 14 14 C 1.52582 * 109.95759 * 182.83003 * 13 11 2 15 15 C 1.52587 * 110.72623 * 289.32551 * 14 13 11 16 16 C 1.53105 * 109.95438 * 70.67623 * 15 14 13 17 17 S 1.81746 * 108.83706 * 296.97185 * 16 15 14 18 18 H 1.07998 * 119.99917 * 182.42872 * 1 2 3 19 19 H 1.08001 * 120.00558 * 2.43362 * 1 2 3 20 20 H 0.96998 * 120.00221 * 4.68413 * 6 5 3 21 21 H 1.08996 * 109.39210 * 302.98268 * 13 11 2 22 22 H 1.09008 * 109.38859 * 62.78077 * 13 11 2 23 23 H 1.09000 * 109.22860 * 49.64506 * 14 13 11 24 24 H 1.08994 * 109.22869 * 169.00852 * 14 13 11 25 25 H 1.09004 * 109.38885 * 190.82107 * 15 14 13 26 26 H 1.09002 * 109.38959 * 310.62407 * 15 14 13 27 27 H 1.08998 * 109.57409 * 56.77754 * 16 15 14 28 28 H 1.08995 * 109.57332 * 177.04196 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0506 1.2131 0.0000 4 1 3.0128 1.2811 -0.4857 5 6 1.5021 2.3397 0.6310 6 7 0.5911 2.1918 1.5563 7 14 2.0740 4.0515 0.1487 8 1 3.1055 3.9474 -0.9146 9 1 0.9185 4.8352 -0.3570 10 1 2.6530 4.7323 1.3345 11 6 2.1038 -1.3051 -0.0006 12 1 1.4112 -2.1267 0.1820 13 6 2.7875 -1.5021 -1.3561 14 6 3.4951 -2.8535 -1.3910 15 6 4.7200 -2.8453 -0.4812 16 6 4.2814 -2.8187 0.9854 17 16 3.3743 -1.2753 1.2988 18 1 -0.5400 -0.9345 0.0396 19 1 -0.5401 0.9344 -0.0397 20 1 0.3430 1.3029 1.8549 21 1 2.0391 -1.4649 -2.1477 22 1 3.5183 -0.7084 -1.5116 23 1 2.8053 -3.6286 -1.0572 24 1 3.8083 -3.0684 -2.4126 25 1 5.3135 -3.7409 -0.6653 26 1 5.3225 -1.9620 -0.6934 27 1 3.6329 -3.6710 1.1881 28 1 5.1591 -2.8660 1.6300 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436683.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:51 Heat of formation + Delta-G solvation = -29.771342 kcal Electronic energy + Delta-G solvation = -10865.118628 eV Core-core repulsion = 9005.679364 eV Total energy + Delta-G solvation = -1859.439264 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.45667 -36.70097 -33.59599 -30.65122 -27.55373 -27.10389 -23.98581 -21.65055 -21.22576 -18.70757 -17.42339 -16.08674 -15.86329 -15.48631 -14.98312 -14.86293 -14.47258 -14.04325 -13.89546 -12.99966 -12.92773 -12.54691 -12.43426 -12.11537 -11.95676 -11.84092 -11.27920 -11.10731 -10.87298 -10.40923 -9.57375 -9.04472 -8.53193 -6.36867 0.79514 1.47423 1.50387 1.77490 1.80634 2.09608 2.41362 3.20587 3.77930 3.87476 3.96114 4.17566 4.27267 4.38443 4.51674 4.72865 4.78891 4.99204 5.04850 5.08340 5.15579 5.20922 5.36131 5.75360 5.79382 6.05170 6.64957 6.87824 7.22800 8.28674 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.047440 B = 0.011546 C = 0.011246 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 590.082875 B = 2424.591861 C = 2489.262757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.420 4.420 2 C 0.052 3.948 3 C -0.542 4.542 4 H 0.063 0.937 5 C -0.004 4.004 6 N -0.842 5.842 7 Si 1.116 2.884 8 H -0.262 1.262 9 H -0.272 1.272 10 H -0.271 1.271 11 C 0.006 3.994 12 H 0.064 0.936 13 C -0.102 4.102 14 C -0.122 4.122 15 C -0.113 4.113 16 C -0.084 4.084 17 S -0.305 6.305 18 H 0.057 0.943 19 H 0.054 0.946 20 H 0.281 0.719 21 H 0.064 0.936 22 H 0.060 0.940 23 H 0.064 0.936 24 H 0.091 0.909 25 H 0.103 0.897 26 H 0.065 0.935 27 H 0.084 0.916 28 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.583 -7.963 -4.344 12.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.463 4.463 2 C 0.049 3.951 3 C -0.572 4.572 4 H 0.082 0.918 5 C -0.218 4.218 6 N -0.468 5.468 7 Si 0.935 3.065 8 H -0.186 1.186 9 H -0.198 1.198 10 H -0.197 1.197 11 C -0.123 4.123 12 H 0.082 0.918 13 C -0.141 4.141 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.232 4.232 17 S -0.077 6.077 18 H 0.076 0.924 19 H 0.073 0.927 20 H 0.094 0.906 21 H 0.083 0.917 22 H 0.079 0.921 23 H 0.082 0.918 24 H 0.109 0.891 25 H 0.121 0.879 26 H 0.084 0.916 27 H 0.103 0.897 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 8.524 -5.651 -3.192 10.713 hybrid contribution -0.659 -2.452 -0.793 2.660 sum 7.865 -8.103 -3.985 11.975 Atomic orbital electron populations 1.23043 0.94758 0.96740 1.31766 1.18447 0.92605 0.91901 0.92125 1.20192 1.06105 0.96135 1.34795 0.91842 1.28266 0.92695 1.08920 0.91872 1.70393 1.25685 1.28944 1.21737 0.83035 0.76856 0.69472 0.77150 1.18600 1.19755 1.19674 1.22186 0.95618 0.98678 0.95774 0.91810 1.21631 0.99372 0.98865 0.94274 1.21546 0.97209 0.95569 1.01599 1.21673 0.97806 1.03799 0.91928 1.23585 1.02220 0.96062 1.01287 1.87462 1.40789 1.32800 1.46620 0.92427 0.92737 0.90649 0.91741 0.92075 0.91761 0.89060 0.87912 0.91619 0.89721 0.86625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.42 -23.89 12.21 67.08 0.82 -23.07 15 2 C 0.05 2.84 4.26 -20.16 -0.09 2.76 15 3 C -0.54 -30.45 8.03 23.22 0.19 -30.26 15 4 H 0.06 3.52 7.56 -2.91 -0.02 3.50 15 5 C 0.00 -0.22 4.93 85.37 0.42 0.20 15 6 N -0.84 -50.47 12.52 21.89 0.27 -50.20 15 7 Si 1.12 47.88 29.99 68.60 2.06 49.93 15 8 H -0.26 -10.35 7.11 99.48 0.71 -9.65 15 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 15 10 H -0.27 -11.13 7.11 99.48 0.71 -10.42 15 11 C 0.01 0.26 2.73 29.88 0.08 0.34 15 12 H 0.06 2.80 7.87 -2.39 -0.02 2.78 15 13 C -0.10 -3.75 4.92 30.49 0.15 -3.60 15 14 C -0.12 -3.22 5.61 30.32 0.17 -3.05 15 15 C -0.11 -2.74 5.75 30.49 0.18 -2.56 15 16 C -0.08 -2.34 6.46 72.02 0.46 -1.88 15 17 S -0.31 -12.87 21.03 -56.49 -1.19 -14.06 15 18 H 0.06 3.07 7.92 -2.91 -0.02 3.05 15 19 H 0.05 3.35 6.73 -2.91 -0.02 3.33 15 20 H 0.28 17.62 6.61 -92.71 -0.61 17.01 15 21 H 0.06 2.37 8.14 -2.39 -0.02 2.35 15 22 H 0.06 2.41 7.62 -2.38 -0.02 2.39 15 23 H 0.06 1.64 8.08 -2.39 -0.02 1.62 15 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 15 25 H 0.10 1.77 8.14 -2.38 -0.02 1.75 15 26 H 0.07 1.73 8.05 -2.39 -0.02 1.71 15 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 15 28 H 0.12 2.78 8.14 -2.39 -0.02 2.76 15 Total: -1.00 -64.55 240.92 4.80 -59.76 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 1.27 Total: 15.70 kcal Atomic # 6 Polarization: -63.52 SS G_CDS: 2.38 Total: -61.13 kcal Atomic # 7 Polarization: -50.47 SS G_CDS: 0.27 Total: -50.20 kcal Atomic # 14 Polarization: 47.88 SS G_CDS: 2.06 Total: 49.93 kcal Atomic # 16 Polarization: -12.87 SS G_CDS: -1.19 Total: -14.06 kcal Total: -64.55 4.80 -59.76 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436683.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.985 kcal (2) G-P(sol) polarization free energy of solvation -64.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.771 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds