Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40079 * 119.99996 * 2 1 4 4 H 1.07996 * 119.99742 * 143.37285 * 3 2 1 5 5 C 1.40308 * 119.99808 * 323.37458 * 3 2 1 6 6 N 1.30689 * 120.00080 * 349.72124 * 5 3 2 7 7 Si 1.86799 * 119.99777 * 169.72286 * 5 3 2 8 8 H 1.48507 * 109.46917 * 60.00092 * 7 5 3 9 9 H 1.48500 * 109.47119 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47490 * 299.99993 * 7 5 3 11 11 C 1.50699 * 120.00081 * 180.02562 * 2 1 3 12 12 H 1.09007 * 109.67684 * 230.31943 * 11 2 1 13 13 C 1.53099 * 109.57710 * 109.99949 * 11 2 1 14 14 C 1.52586 * 109.87609 * 177.21522 * 13 11 2 15 15 C 1.52402 * 110.81919 * 70.74441 * 14 13 11 16 16 C 1.53095 * 109.89448 * 289.23922 * 15 14 13 17 17 S 1.81740 * 109.57532 * 350.64086 * 11 2 1 18 18 H 1.07996 * 119.99836 * 354.27916 * 1 2 3 19 19 H 1.08000 * 119.99609 * 174.28404 * 1 2 3 20 20 H 0.97002 * 120.00049 * 180.02562 * 6 5 3 21 21 H 1.09004 * 109.38694 * 297.31697 * 13 11 2 22 22 H 1.08998 * 109.39117 * 57.11730 * 13 11 2 23 23 H 1.09000 * 109.22329 * 190.94669 * 14 13 11 24 24 H 1.08996 * 109.22348 * 310.30526 * 14 13 11 25 25 H 1.09002 * 109.42829 * 169.10601 * 15 14 13 26 26 H 1.09002 * 109.33918 * 49.31565 * 15 14 13 27 27 H 1.08999 * 109.57264 * 303.21641 * 16 15 14 28 28 H 1.08994 * 109.68787 * 182.89187 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9707 1.3054 0.5580 5 6 1.5569 2.3082 -0.7249 6 7 0.5621 2.1462 -1.5568 7 14 2.3215 3.9978 -0.5010 8 1 3.7593 3.9431 -0.8686 9 1 1.6248 4.9761 -1.3743 10 1 2.1889 4.4172 0.9173 11 6 2.1038 -1.3051 -0.0006 12 1 2.8549 -1.2956 0.7894 13 6 2.7876 -1.5021 -1.3562 14 6 3.6090 -2.7879 -1.3409 15 6 2.7001 -4.0112 -1.3306 16 6 2.0052 -4.1325 0.0281 17 16 0.9451 -2.6773 0.2773 18 1 -0.5400 0.9306 0.0932 19 1 -0.5399 -0.9307 -0.0932 20 1 0.2209 2.9033 -2.0582 21 1 2.0303 -1.5656 -2.1376 22 1 3.4443 -0.6555 -1.5567 23 1 4.2407 -2.8207 -2.2286 24 1 4.2394 -2.8005 -0.4518 25 1 3.2946 -4.9061 -1.5142 26 1 1.9486 -3.9091 -2.1135 27 1 2.7544 -4.1782 0.8186 28 1 1.3961 -5.0361 0.0496 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260436685.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = -7.609068 kcal Electronic energy + Delta-G solvation = -10820.931966 eV Core-core repulsion = 8962.453731 eV Total energy + Delta-G solvation = -1858.478235 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -36.65649 -34.57411 -31.84516 -29.08148 -26.08918 -25.07507 -22.25155 -20.17342 -19.09992 -16.08432 -15.62644 -15.01586 -14.36565 -13.98839 -13.29416 -13.09620 -12.51164 -12.30051 -12.00900 -11.35390 -11.33522 -10.96920 -10.89909 -10.50584 -10.39584 -9.93892 -9.79793 -9.30980 -8.92514 -8.63306 -7.15413 -6.88647 -6.36763 -4.11109 2.52412 3.14032 3.21957 3.25226 3.40681 4.07851 4.25012 5.06997 5.18063 5.24661 5.43280 5.72481 5.78704 5.88825 6.04537 6.19244 6.23546 6.38959 6.46328 6.74248 6.82455 7.03870 7.44747 7.67843 8.21791 8.40958 8.98493 9.23117 9.39052 10.65138 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.058310 B = 0.010644 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.080018 B = 2629.883458 C = 2871.284873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C 0.043 3.957 3 C -0.481 4.481 4 H 0.060 0.940 5 C 0.079 3.921 6 N -0.815 5.815 7 Si 0.899 3.101 8 H -0.271 1.271 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.006 3.994 12 H 0.071 0.929 13 C -0.102 4.102 14 C -0.129 4.129 15 C -0.117 4.117 16 C -0.105 4.105 17 S -0.258 6.258 18 H 0.083 0.917 19 H 0.063 0.937 20 H 0.271 0.729 21 H 0.070 0.930 22 H 0.078 0.922 23 H 0.061 0.939 24 H 0.057 0.943 25 H 0.060 0.940 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.697 -7.357 -0.121 8.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.343 4.343 2 C 0.040 3.960 3 C -0.515 4.515 4 H 0.078 0.922 5 C -0.135 4.135 6 N -0.443 5.443 7 Si 0.724 3.276 8 H -0.196 1.196 9 H -0.208 1.208 10 H -0.194 1.194 11 C -0.122 4.122 12 H 0.089 0.911 13 C -0.142 4.142 14 C -0.167 4.167 15 C -0.155 4.155 16 C -0.253 4.253 17 S -0.030 6.030 18 H 0.102 0.898 19 H 0.081 0.919 20 H 0.082 0.918 21 H 0.088 0.912 22 H 0.096 0.904 23 H 0.080 0.920 24 H 0.075 0.925 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.089 0.911 28 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.474 -7.258 -0.013 8.047 hybrid contribution 1.640 0.808 -0.309 1.854 sum 5.114 -6.450 -0.321 8.238 Atomic orbital electron populations 1.23450 0.94633 0.97565 1.18643 1.17906 0.92865 0.88649 0.96548 1.18844 1.08531 0.95184 1.28917 0.92190 1.25642 0.94527 0.99744 0.93586 1.69765 1.22848 1.31685 1.20049 0.86559 0.79648 0.82439 0.78918 1.19618 1.20801 1.19383 1.22442 0.96909 0.94334 0.98547 0.91100 1.21629 0.99217 0.96329 0.96976 1.21568 0.98217 0.95241 1.01633 1.21630 0.99131 0.97992 0.96794 1.23480 1.01734 1.00404 0.99667 1.87097 1.21674 1.00908 1.93289 0.89840 0.91926 0.91840 0.91159 0.90394 0.92003 0.92464 0.92168 0.90960 0.91083 0.89079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -8.38 12.30 29.59 0.36 -8.01 15 2 C 0.04 1.14 4.87 -105.07 -0.51 0.62 15 3 C -0.48 -13.19 8.69 -38.11 -0.33 -13.52 15 4 H 0.06 1.59 7.87 -52.49 -0.41 1.18 15 5 C 0.08 2.12 5.17 -17.26 -0.09 2.03 15 6 N -0.82 -22.82 11.46 55.57 0.64 -22.18 15 7 Si 0.90 20.10 29.58 -169.99 -5.03 15.07 15 8 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 9 H -0.28 -6.21 7.11 56.52 0.40 -5.81 15 10 H -0.27 -5.99 7.11 56.52 0.40 -5.58 15 11 C 0.01 0.14 2.79 -27.83 -0.08 0.06 15 12 H 0.07 1.55 8.14 -51.92 -0.42 1.13 15 13 C -0.10 -2.05 4.98 -26.89 -0.13 -2.19 15 14 C -0.13 -2.03 5.59 -27.25 -0.15 -2.18 15 15 C -0.12 -1.69 5.75 -26.99 -0.16 -1.85 15 16 C -0.10 -1.63 6.45 37.21 0.24 -1.39 15 17 S -0.26 -5.29 19.27 -107.50 -2.07 -7.36 15 18 H 0.08 2.48 6.92 -52.49 -0.36 2.11 15 19 H 0.06 1.68 6.02 -48.27 -0.29 1.39 15 20 H 0.27 7.05 8.29 -40.82 -0.34 6.71 15 21 H 0.07 1.51 8.05 -51.93 -0.42 1.10 15 22 H 0.08 1.63 7.91 -51.93 -0.41 1.22 15 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 15 24 H 0.06 0.87 8.08 -51.93 -0.42 0.45 15 25 H 0.06 0.72 8.14 -51.93 -0.42 0.30 15 26 H 0.07 1.11 8.05 -51.93 -0.42 0.69 15 27 H 0.07 1.04 8.14 -51.93 -0.42 0.62 15 28 H 0.09 1.25 8.14 -51.93 -0.42 0.83 15 LS Contribution 240.15 15.07 3.62 3.62 Total: -1.00 -28.36 240.15 -7.67 -36.03 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -3.98 Total: 1.25 kcal Atomic # 6 Polarization: -25.58 SS G_CDS: -0.85 Total: -26.43 kcal Atomic # 7 Polarization: -22.82 SS G_CDS: 0.64 Total: -22.18 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.03 Total: 15.07 kcal Atomic # 16 Polarization: -5.29 SS G_CDS: -2.07 Total: -7.36 kcal Total LS contribution 3.62 Total: 3.62 kcal Total: -28.36 -7.67 -36.03 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436685.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.425 kcal (2) G-P(sol) polarization free energy of solvation -28.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds