Wall clock time and date at job start Mon Mar 30 2020 02:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35031 * 1 3 3 C 1.40079 * 119.99996 * 2 1 4 4 H 1.07996 * 119.99742 * 143.37285 * 3 2 1 5 5 C 1.40308 * 119.99808 * 323.37458 * 3 2 1 6 6 N 1.30689 * 120.00080 * 349.72124 * 5 3 2 7 7 Si 1.86799 * 119.99777 * 169.72286 * 5 3 2 8 8 H 1.48507 * 109.46917 * 60.00092 * 7 5 3 9 9 H 1.48500 * 109.47119 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47490 * 299.99993 * 7 5 3 11 11 C 1.50699 * 120.00081 * 180.02562 * 2 1 3 12 12 H 1.09007 * 109.67684 * 230.31943 * 11 2 1 13 13 C 1.53099 * 109.57710 * 109.99949 * 11 2 1 14 14 C 1.52586 * 109.87609 * 177.21522 * 13 11 2 15 15 C 1.52402 * 110.81919 * 70.74441 * 14 13 11 16 16 C 1.53095 * 109.89448 * 289.23922 * 15 14 13 17 17 S 1.81740 * 109.57532 * 350.64086 * 11 2 1 18 18 H 1.07996 * 119.99836 * 354.27916 * 1 2 3 19 19 H 1.08000 * 119.99609 * 174.28404 * 1 2 3 20 20 H 0.97002 * 120.00049 * 180.02562 * 6 5 3 21 21 H 1.09004 * 109.38694 * 297.31697 * 13 11 2 22 22 H 1.08998 * 109.39117 * 57.11730 * 13 11 2 23 23 H 1.09000 * 109.22329 * 190.94669 * 14 13 11 24 24 H 1.08996 * 109.22348 * 310.30526 * 14 13 11 25 25 H 1.09002 * 109.42829 * 169.10601 * 15 14 13 26 26 H 1.09002 * 109.33918 * 49.31565 * 15 14 13 27 27 H 1.08999 * 109.57264 * 303.21641 * 16 15 14 28 28 H 1.08994 * 109.68787 * 182.89187 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0507 1.2131 0.0000 4 1 2.9707 1.3054 0.5580 5 6 1.5569 2.3082 -0.7249 6 7 0.5621 2.1462 -1.5568 7 14 2.3215 3.9978 -0.5010 8 1 3.7593 3.9431 -0.8686 9 1 1.6248 4.9761 -1.3743 10 1 2.1889 4.4172 0.9173 11 6 2.1038 -1.3051 -0.0006 12 1 2.8549 -1.2956 0.7894 13 6 2.7876 -1.5021 -1.3562 14 6 3.6090 -2.7879 -1.3409 15 6 2.7001 -4.0112 -1.3306 16 6 2.0052 -4.1325 0.0281 17 16 0.9451 -2.6773 0.2773 18 1 -0.5400 0.9306 0.0932 19 1 -0.5399 -0.9307 -0.0932 20 1 0.2209 2.9033 -2.0582 21 1 2.0303 -1.5656 -2.1376 22 1 3.4443 -0.6555 -1.5567 23 1 4.2407 -2.8207 -2.2286 24 1 4.2394 -2.8005 -0.4518 25 1 3.2946 -4.9061 -1.5142 26 1 1.9486 -3.9091 -2.1135 27 1 2.7544 -4.1782 0.8186 28 1 1.3961 -5.0361 0.0496 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260436685.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:53 Heat of formation + Delta-G solvation = -23.061778 kcal Electronic energy + Delta-G solvation = -10821.602046 eV Core-core repulsion = 8962.453731 eV Total energy + Delta-G solvation = -1859.148315 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -38.23740 -36.37096 -33.72474 -30.72648 -27.66169 -27.16402 -23.79343 -21.53376 -21.12515 -17.89428 -17.43369 -16.91537 -15.77719 -15.64436 -14.76807 -14.53138 -14.22564 -14.02090 -13.75695 -13.15757 -12.85631 -12.69985 -12.37616 -12.23502 -11.88760 -11.77484 -11.48613 -11.07849 -10.91194 -10.27201 -9.26039 -8.52340 -8.42575 -6.28197 0.98765 1.34200 1.40239 1.50215 1.86147 2.05956 2.31988 3.22051 3.87123 3.93627 4.12070 4.27143 4.35362 4.52506 4.61657 4.80919 4.88408 5.05747 5.10339 5.17876 5.29075 5.33031 5.43858 5.53326 6.01931 6.24051 6.86537 7.10304 7.30545 8.59719 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.058310 B = 0.010644 C = 0.009749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 480.080018 B = 2629.883458 C = 2871.284873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.328 4.328 2 C 0.039 3.961 3 C -0.511 4.511 4 H 0.064 0.936 5 C 0.033 3.967 6 N -0.848 5.848 7 Si 0.974 3.026 8 H -0.258 1.258 9 H -0.275 1.275 10 H -0.265 1.265 11 C 0.008 3.992 12 H 0.074 0.926 13 C -0.096 4.096 14 C -0.122 4.122 15 C -0.114 4.114 16 C -0.086 4.086 17 S -0.309 6.309 18 H 0.053 0.947 19 H 0.066 0.934 20 H 0.277 0.723 21 H 0.046 0.954 22 H 0.061 0.939 23 H 0.085 0.915 24 H 0.068 0.932 25 H 0.102 0.898 26 H 0.061 0.939 27 H 0.087 0.913 28 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.664 -8.366 -0.247 10.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.369 4.369 2 C 0.037 3.963 3 C -0.544 4.544 4 H 0.082 0.918 5 C -0.179 4.179 6 N -0.476 5.476 7 Si 0.796 3.204 8 H -0.182 1.182 9 H -0.199 1.199 10 H -0.190 1.190 11 C -0.121 4.121 12 H 0.092 0.908 13 C -0.135 4.135 14 C -0.159 4.159 15 C -0.152 4.152 16 C -0.234 4.234 17 S -0.081 6.081 18 H 0.071 0.929 19 H 0.085 0.915 20 H 0.087 0.913 21 H 0.065 0.935 22 H 0.080 0.920 23 H 0.103 0.897 24 H 0.087 0.913 25 H 0.120 0.880 26 H 0.080 0.920 27 H 0.106 0.894 28 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 5.440 -8.277 -0.137 9.905 hybrid contribution 1.028 1.055 -0.277 1.499 sum 6.468 -7.222 -0.414 9.704 Atomic orbital electron populations 1.23237 0.95277 0.96386 1.22013 1.18333 0.92896 0.90931 0.94184 1.19215 1.08994 0.96439 1.29771 0.91769 1.26595 0.94765 1.03794 0.92723 1.69875 1.24028 1.33200 1.20520 0.85396 0.79219 0.76874 0.78944 1.18220 1.19948 1.19005 1.22249 0.96652 0.93206 0.99963 0.90788 1.21529 0.98646 0.98627 0.94682 1.21522 0.97992 0.93074 1.03328 1.21633 0.99039 0.98942 0.95632 1.23610 1.01293 0.97534 1.00967 1.87156 1.23969 1.03464 1.93525 0.92884 0.91546 0.91333 0.93534 0.92011 0.89687 0.91346 0.88005 0.92009 0.89425 0.86649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.33 -19.11 12.30 67.08 0.83 -18.29 15 2 C 0.04 2.13 4.87 -20.16 -0.10 2.03 15 3 C -0.51 -28.61 8.69 23.22 0.20 -28.40 15 4 H 0.06 3.44 7.87 -2.91 -0.02 3.42 15 5 C 0.03 1.77 5.17 85.37 0.44 2.21 15 6 N -0.85 -48.67 11.46 21.89 0.25 -48.42 15 7 Si 0.97 41.26 29.58 68.60 2.03 43.29 15 8 H -0.26 -10.34 7.11 99.48 0.71 -9.64 15 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 15 10 H -0.27 -11.04 7.11 99.48 0.71 -10.34 15 11 C 0.01 0.35 2.79 29.88 0.08 0.43 15 12 H 0.07 3.22 8.14 -2.38 -0.02 3.20 15 13 C -0.10 -3.80 4.98 30.49 0.15 -3.65 15 14 C -0.12 -3.45 5.59 30.26 0.17 -3.28 15 15 C -0.11 -2.86 5.75 30.43 0.18 -2.69 15 16 C -0.09 -2.39 6.45 72.01 0.46 -1.92 15 17 S -0.31 -12.55 19.27 -56.49 -1.09 -13.64 15 18 H 0.05 3.33 6.92 -2.91 -0.02 3.31 15 19 H 0.07 3.74 6.02 -5.59 -0.03 3.71 15 20 H 0.28 14.65 8.29 -92.71 -0.77 13.89 15 21 H 0.05 2.03 8.05 -2.39 -0.02 2.01 15 22 H 0.06 2.60 7.91 -2.39 -0.02 2.59 15 23 H 0.08 2.05 8.14 -2.39 -0.02 2.04 15 24 H 0.07 1.82 8.08 -2.39 -0.02 1.80 15 25 H 0.10 1.85 8.14 -2.39 -0.02 1.83 15 26 H 0.06 1.72 8.05 -2.39 -0.02 1.70 15 27 H 0.09 2.20 8.14 -2.39 -0.02 2.18 15 28 H 0.12 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -63.16 240.15 4.71 -58.46 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: 1.10 Total: 13.87 kcal Atomic # 6 Polarization: -55.97 SS G_CDS: 2.41 Total: -53.56 kcal Atomic # 7 Polarization: -48.67 SS G_CDS: 0.25 Total: -48.42 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: -12.55 SS G_CDS: -1.09 Total: -13.64 kcal Total: -63.16 4.71 -58.46 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260436685.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.393 kcal (2) G-P(sol) polarization free energy of solvation -63.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds