Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35711 * 116.99695 * 2 1 4 4 C 1.41936 * 126.88010 * 180.32176 * 3 2 1 5 5 C 1.35270 * 103.96236 * 180.13879 * 4 3 2 6 6 C 1.50697 * 126.71012 * 179.87835 * 5 4 3 7 7 H 1.08996 * 109.47188 * 19.71378 * 6 5 4 8 8 N 1.46905 * 109.47125 * 139.71157 * 6 5 4 9 9 C 1.50703 * 109.47094 * 259.71084 * 6 5 4 10 10 H 1.08000 * 119.99934 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99701 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00608 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99602 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47056 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47251 * 120.00186 * 13 11 9 16 16 H 1.48503 * 109.46573 * 239.99823 * 13 11 9 17 17 O 1.34089 * 106.57946 * 359.61728 * 5 4 3 18 18 N 1.20914 * 111.72008 * 0.26225 * 17 5 4 19 19 H 1.08996 * 109.47372 * 59.99972 * 1 2 3 20 20 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47010 * 300.00100 * 1 2 3 22 22 H 1.08000 * 128.01876 * 0.03829 * 4 3 2 23 23 H 1.00901 * 110.99869 * 296.04907 * 8 6 5 24 24 H 1.00896 * 110.99543 * 60.00030 * 8 6 5 25 25 H 0.96991 * 120.00497 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4529 -0.0064 5 6 3.5396 2.8021 -0.0002 6 6 4.8087 3.6147 -0.0005 7 1 5.6352 2.9976 -0.3529 8 7 4.6485 4.7728 -0.8901 9 6 5.0995 4.0926 1.3988 10 1 4.4323 3.8334 2.2075 11 6 6.2180 4.8598 1.6467 12 7 7.0308 5.1750 0.6620 13 14 6.5788 5.4516 3.3814 14 1 5.5189 4.9654 4.3008 15 1 7.8957 4.9242 3.8204 16 1 6.6084 6.9362 3.4017 17 8 2.2849 3.2752 0.0003 18 7 1.4699 2.3820 0.0005 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 4.2447 0.7288 -0.0128 23 1 4.5165 4.4787 -1.8463 24 1 3.8878 5.3609 -0.5844 25 1 7.8178 5.7144 0.8365 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260511630.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = 27.856377 kcal Electronic energy + Delta-G solvation = -12415.541038 eV Core-core repulsion = 10012.307485 eV Total energy + Delta-G solvation = -2403.233553 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -44.16101 -38.48077 -35.03986 -32.45145 -31.75642 -29.87720 -27.44137 -26.15004 -22.79296 -22.69980 -20.39164 -17.34985 -17.01552 -16.28489 -16.19516 -15.13904 -14.91331 -14.54373 -14.21035 -13.32337 -12.70280 -12.44094 -12.05108 -11.65070 -11.60702 -10.93851 -10.83098 -10.56020 -10.11872 -9.54252 -8.86877 -8.58607 -8.48405 -7.39538 -6.01974 -4.18694 2.19607 2.89027 3.13639 3.29106 3.37581 3.42149 3.96655 4.40873 4.78327 5.19854 5.22377 5.24113 5.45400 5.64554 5.89873 6.08022 6.22183 6.57031 7.11283 7.35674 7.77147 7.91133 8.39520 8.81838 8.86733 8.96918 9.51075 11.02442 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.059587 B = 0.009032 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.787446 B = 3099.478417 C = 3300.179520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.289 6.289 3 C 0.201 3.799 4 C -0.268 4.268 5 C 0.020 3.980 6 C 0.294 3.706 7 H 0.076 0.924 8 N -0.806 5.806 9 C -0.540 4.540 10 H 0.058 0.942 11 C 0.087 3.913 12 N -0.844 5.844 13 Si 0.892 3.108 14 H -0.273 1.273 15 H -0.283 1.283 16 H -0.282 1.282 17 O 0.086 5.914 18 N -0.433 5.433 19 H 0.054 0.946 20 H 0.099 0.901 21 H 0.055 0.945 22 H 0.169 0.831 23 H 0.304 0.696 24 H 0.328 0.672 25 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.490 -6.146 -1.815 9.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.196 6.196 3 C 0.003 3.997 4 C -0.292 4.292 5 C -0.046 4.046 6 C 0.183 3.817 7 H 0.094 0.906 8 N -0.331 5.331 9 C -0.579 4.579 10 H 0.077 0.923 11 C -0.121 4.121 12 N -0.477 5.477 13 Si 0.720 3.280 14 H -0.198 1.198 15 H -0.209 1.209 16 H -0.208 1.208 17 O 0.031 5.969 18 N -0.164 5.164 19 H 0.073 0.927 20 H 0.117 0.883 21 H 0.074 0.926 22 H 0.187 0.813 23 H 0.115 0.885 24 H 0.141 0.859 25 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -7.710 -5.680 -1.660 9.719 hybrid contribution -0.357 -0.606 0.790 1.057 sum -8.067 -6.286 -0.871 10.264 Atomic orbital electron populations 1.22941 0.77916 1.03235 1.02017 1.86141 1.21774 1.21813 1.89903 1.22116 0.91235 0.85400 1.00986 1.21777 0.93337 0.96333 1.17704 1.27345 0.89363 0.94497 0.93392 1.18248 0.81954 0.86465 0.95058 0.90614 1.59073 1.50571 1.20542 1.02950 1.20771 1.10016 1.36055 0.91035 0.92330 1.24898 0.95464 0.94978 0.96716 1.70087 1.12385 1.34795 1.30471 0.86551 0.78203 0.78637 0.84643 1.19763 1.20890 1.20805 1.84715 1.13128 1.29728 1.69350 1.74009 1.16820 0.96598 1.28933 0.92701 0.88305 0.92645 0.81318 0.88548 0.85930 0.93077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 10.73 101.05 1.08 1.52 15 2 O -0.29 -4.96 10.57 -18.84 -0.20 -5.16 15 3 C 0.20 3.95 8.01 -16.65 -0.13 3.82 15 4 C -0.27 -5.38 11.10 -39.22 -0.44 -5.81 15 5 C 0.02 0.44 6.21 -35.37 -0.22 0.22 15 6 C 0.29 6.97 3.09 -70.01 -0.22 6.75 15 7 H 0.08 1.88 8.14 -51.93 -0.42 1.46 15 8 N -0.81 -18.06 8.53 -6.65 -0.06 -18.12 15 9 C -0.54 -14.31 8.71 -34.44 -0.30 -14.61 15 10 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 11 C 0.09 2.34 5.39 -17.82 -0.10 2.24 15 12 N -0.84 -23.34 12.77 55.43 0.71 -22.64 15 13 Si 0.89 20.69 29.54 -169.99 -5.02 15.67 15 14 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 16 H -0.28 -6.53 7.11 56.52 0.40 -6.13 15 17 O 0.09 1.85 11.13 17.05 0.19 2.04 15 18 N -0.43 -8.92 11.54 30.39 0.35 -8.57 15 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 15 20 H 0.10 0.90 8.14 -51.93 -0.42 0.48 15 21 H 0.05 0.71 8.14 -51.93 -0.42 0.29 15 22 H 0.17 3.01 8.06 -52.49 -0.42 2.59 15 23 H 0.30 5.99 9.06 -39.29 -0.36 5.63 15 24 H 0.33 7.16 8.92 -39.29 -0.35 6.81 15 25 H 0.26 6.84 8.31 -40.82 -0.34 6.50 15 LS Contribution 233.30 15.07 3.52 3.52 Total: -1.00 -28.90 233.30 -3.19 -32.09 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -2.36 Total: 7.04 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: -0.32 Total: -5.87 kcal Atomic # 7 Polarization: -50.33 SS G_CDS: 1.00 Total: -49.33 kcal Atomic # 8 Polarization: -3.11 SS G_CDS: -0.01 Total: -3.12 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -28.90 -3.19 -32.09 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511630.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.950 kcal (2) G-P(sol) polarization free energy of solvation -28.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.093 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds