Wall clock time and date at job start Mon Mar 30 2020 02:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35711 * 116.99695 * 2 1 4 4 C 1.41936 * 126.88010 * 180.32176 * 3 2 1 5 5 C 1.35270 * 103.96236 * 180.13879 * 4 3 2 6 6 C 1.50697 * 126.71012 * 179.87835 * 5 4 3 7 7 H 1.08996 * 109.47188 * 19.71378 * 6 5 4 8 8 N 1.46905 * 109.47125 * 139.71157 * 6 5 4 9 9 C 1.50703 * 109.47094 * 259.71084 * 6 5 4 10 10 H 1.08000 * 119.99934 * 0.02562 * 9 6 5 11 11 C 1.37875 * 119.99701 * 179.97438 * 9 6 5 12 12 N 1.31513 * 120.00608 * 0.02562 * 11 9 6 13 13 Si 1.86806 * 119.99602 * 180.02562 * 11 9 6 14 14 H 1.48497 * 109.47056 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47251 * 120.00186 * 13 11 9 16 16 H 1.48503 * 109.46573 * 239.99823 * 13 11 9 17 17 O 1.34089 * 106.57946 * 359.61728 * 5 4 3 18 18 N 1.20914 * 111.72008 * 0.26225 * 17 5 4 19 19 H 1.08996 * 109.47372 * 59.99972 * 1 2 3 20 20 H 1.09003 * 109.46859 * 180.02562 * 1 2 3 21 21 H 1.08999 * 109.47010 * 300.00100 * 1 2 3 22 22 H 1.08000 * 128.01876 * 0.03829 * 4 3 2 23 23 H 1.00901 * 110.99869 * 296.04907 * 8 6 5 24 24 H 1.00896 * 110.99543 * 60.00030 * 8 6 5 25 25 H 0.96991 * 120.00497 * 180.02562 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2092 0.0000 4 6 3.4434 1.4529 -0.0064 5 6 3.5396 2.8021 -0.0002 6 6 4.8087 3.6147 -0.0005 7 1 5.6352 2.9976 -0.3529 8 7 4.6485 4.7728 -0.8901 9 6 5.0995 4.0926 1.3988 10 1 4.4323 3.8334 2.2075 11 6 6.2180 4.8598 1.6467 12 7 7.0308 5.1750 0.6620 13 14 6.5788 5.4516 3.3814 14 1 5.5189 4.9654 4.3008 15 1 7.8957 4.9242 3.8204 16 1 6.6084 6.9362 3.4017 17 8 2.2849 3.2752 0.0003 18 7 1.4699 2.3820 0.0005 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3633 0.5138 0.8900 22 1 4.2447 0.7288 -0.0128 23 1 4.5165 4.4787 -1.8463 24 1 3.8878 5.3609 -0.5844 25 1 7.8178 5.7144 0.8365 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260511630.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:00:22 Heat of formation + Delta-G solvation = 4.981912 kcal Electronic energy + Delta-G solvation = -12416.532949 eV Core-core repulsion = 10012.307485 eV Total energy + Delta-G solvation = -2404.225464 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -45.75652 -39.81648 -36.88088 -34.08830 -33.63899 -31.55475 -28.63019 -28.03925 -24.61213 -24.27040 -21.93691 -19.07915 -18.61231 -18.14605 -17.66556 -16.55085 -16.42755 -16.31874 -15.83910 -14.95320 -14.52361 -14.15730 -13.56278 -13.07293 -12.83536 -12.76865 -12.69113 -12.23129 -11.97290 -11.47028 -10.59445 -10.39106 -10.18583 -9.16515 -8.04296 -6.26839 0.54666 1.32049 1.46184 1.49917 1.59613 1.79076 2.31331 2.48815 3.21670 3.29798 4.03081 4.21418 4.22866 4.28236 4.37137 4.58282 4.60353 4.94724 5.24881 5.70842 5.96632 5.97793 6.51411 6.94361 7.12380 7.28425 7.46069 8.99748 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.059587 B = 0.009032 C = 0.008482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 469.787446 B = 3099.478417 C = 3300.179520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.294 6.294 3 C 0.206 3.794 4 C -0.266 4.266 5 C 0.008 3.992 6 C 0.300 3.700 7 H 0.061 0.939 8 N -0.814 5.814 9 C -0.555 4.555 10 H 0.046 0.954 11 C 0.046 3.954 12 N -0.871 5.871 13 Si 0.953 3.047 14 H -0.275 1.275 15 H -0.277 1.277 16 H -0.280 1.280 17 O 0.074 5.926 18 N -0.439 5.439 19 H 0.057 0.943 20 H 0.140 0.860 21 H 0.053 0.947 22 H 0.188 0.812 23 H 0.320 0.680 24 H 0.331 0.669 25 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.117 -6.900 -1.467 10.754 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.201 6.201 3 C 0.007 3.993 4 C -0.288 4.288 5 C -0.058 4.058 6 C 0.188 3.812 7 H 0.079 0.921 8 N -0.340 5.340 9 C -0.594 4.594 10 H 0.064 0.936 11 C -0.159 4.159 12 N -0.506 5.506 13 Si 0.778 3.222 14 H -0.199 1.199 15 H -0.202 1.202 16 H -0.205 1.205 17 O 0.020 5.980 18 N -0.172 5.172 19 H 0.076 0.924 20 H 0.158 0.842 21 H 0.072 0.928 22 H 0.205 0.795 23 H 0.132 0.868 24 H 0.143 0.857 25 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.342 -6.443 -1.319 10.623 hybrid contribution -0.265 -0.463 0.646 0.838 sum -8.608 -6.906 -0.673 11.056 Atomic orbital electron populations 1.23319 0.75416 1.06036 1.02063 1.86164 1.24203 1.20258 1.89444 1.22224 0.91267 0.85995 0.99787 1.22057 0.94315 0.96080 1.16367 1.26926 0.89021 0.94915 0.94973 1.17877 0.82617 0.86665 0.93997 0.92104 1.58914 1.50893 1.20413 1.03806 1.20990 1.09968 1.36260 0.92162 0.93568 1.25548 0.95308 0.95089 1.00003 1.70174 1.12800 1.35458 1.32140 0.85618 0.77973 0.78054 0.80518 1.19944 1.20220 1.20546 1.84696 1.13063 1.30238 1.69962 1.73987 1.16646 0.96917 1.29620 0.92428 0.84201 0.92803 0.79493 0.86849 0.85677 0.92964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.73 113.37 1.22 1.81 15 2 O -0.29 -9.39 10.57 -90.32 -0.95 -10.35 15 3 C 0.21 7.77 8.01 85.79 0.69 8.46 15 4 C -0.27 -10.32 11.10 22.50 0.25 -10.07 15 5 C 0.01 0.33 6.21 25.00 0.16 0.48 15 6 C 0.30 14.24 3.09 43.42 0.13 14.38 15 7 H 0.06 3.05 8.14 -2.39 -0.02 3.03 15 8 N -0.81 -36.40 8.53 -174.95 -1.49 -37.89 15 9 C -0.56 -29.45 8.71 25.60 0.22 -29.23 15 10 H 0.05 2.51 7.74 -2.91 -0.02 2.49 15 11 C 0.05 2.44 5.39 84.65 0.46 2.89 15 12 N -0.87 -48.07 12.77 21.45 0.27 -47.80 15 13 Si 0.95 42.28 29.54 68.60 2.03 44.30 15 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 15 15 H -0.28 -11.92 7.11 99.48 0.71 -11.21 15 16 H -0.28 -12.23 7.11 99.48 0.71 -11.53 15 17 O 0.07 3.16 11.13 71.18 0.79 3.95 15 18 N -0.44 -17.59 11.54 -172.58 -1.99 -19.58 15 19 H 0.06 1.29 8.14 -2.39 -0.02 1.27 15 20 H 0.14 2.01 8.14 -2.39 -0.02 1.99 15 21 H 0.05 1.25 8.14 -2.39 -0.02 1.23 15 22 H 0.19 6.39 8.06 -2.91 -0.02 6.37 15 23 H 0.32 12.49 9.06 -89.69 -0.81 11.68 15 24 H 0.33 14.42 8.92 -89.70 -0.80 13.62 15 25 H 0.26 13.70 8.31 -92.71 -0.77 12.93 15 Total: -1.00 -59.60 233.30 1.39 -58.21 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -0.39 Total: 20.44 kcal Atomic # 6 Polarization: -14.41 SS G_CDS: 3.12 Total: -11.29 kcal Atomic # 7 Polarization: -102.06 SS G_CDS: -3.21 Total: -105.27 kcal Atomic # 8 Polarization: -6.24 SS G_CDS: -0.16 Total: -6.40 kcal Atomic # 14 Polarization: 42.28 SS G_CDS: 2.03 Total: 44.30 kcal Total: -59.60 1.39 -58.21 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260511630.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.190 kcal (2) G-P(sol) polarization free energy of solvation -59.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds