Wall clock time and date at job start Mon Mar 30 2020 02:08:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35036 * 1 3 3 C 1.40072 * 119.99564 * 2 1 4 4 H 1.08005 * 119.99599 * 155.02823 * 3 2 1 5 5 C 1.40303 * 120.00435 * 335.02437 * 3 2 1 6 6 N 1.30688 * 119.99879 * 342.75012 * 5 3 2 7 7 Si 1.86800 * 120.00024 * 162.74381 * 5 3 2 8 8 H 1.48501 * 109.47128 * 0.02562 * 7 5 3 9 9 H 1.48497 * 109.46965 * 120.00458 * 7 5 3 10 10 H 1.48495 * 109.47161 * 240.00342 * 7 5 3 11 11 C 1.50699 * 119.99865 * 180.02562 * 2 1 3 12 12 C 1.53002 * 109.47076 * 95.00211 * 11 2 1 13 13 H 1.08996 * 109.60727 * 54.29524 * 12 11 2 14 14 C 1.53858 * 109.60862 * 174.63634 * 12 11 2 15 15 C 1.54730 * 107.10164 * 167.12397 * 14 12 11 16 16 S 1.83456 * 102.13857 * 317.81266 * 15 14 12 17 17 C 1.54283 * 109.60778 * 293.95532 * 12 11 2 18 18 H 1.07995 * 120.00405 * 354.31429 * 1 2 3 19 19 H 1.08002 * 119.99571 * 174.31686 * 1 2 3 20 20 H 0.97001 * 120.00355 * 179.97438 * 6 5 3 21 21 H 1.08997 * 109.47435 * 335.00030 * 11 2 1 22 22 H 1.09001 * 109.46922 * 214.99132 * 11 2 1 23 23 H 1.09001 * 109.97057 * 286.35199 * 14 12 11 24 24 H 1.08994 * 109.97432 * 47.63633 * 14 12 11 25 25 H 1.09007 * 110.88190 * 199.65575 * 15 14 12 26 26 H 1.08994 * 110.89396 * 75.97464 * 15 14 12 27 27 H 1.08997 * 110.39976 * 331.10053 * 17 12 11 28 28 H 1.09000 * 110.39364 * 93.39145 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3504 0.0000 0.0000 3 6 2.0506 1.2131 0.0000 4 1 3.0549 1.2568 0.3949 5 6 1.4475 2.3714 -0.5130 6 7 0.3971 2.2742 -1.2844 7 14 2.1459 4.0523 -0.0933 8 1 3.3285 3.8905 0.7901 9 1 2.5526 4.7452 -1.3422 10 1 1.1121 4.8575 0.6053 11 6 2.1038 -1.3051 -0.0006 12 6 2.4677 -1.6833 -1.4378 13 1 3.0067 -0.8603 -1.9072 14 6 3.3513 -2.9428 -1.4323 15 6 3.4124 -3.4621 -2.8886 16 16 1.6728 -3.2719 -3.4392 17 6 1.1817 -1.9822 -2.2359 18 1 -0.5400 0.9306 0.0927 19 1 -0.5399 -0.9308 -0.0926 20 1 -0.0202 3.0750 -1.6388 21 1 1.4789 -2.0857 0.4334 22 1 3.0146 -1.1991 0.5888 23 1 4.3547 -2.6922 -1.0880 24 1 2.9135 -3.7019 -0.7842 25 1 3.7158 -4.5088 -2.9155 26 1 4.0800 -2.8479 -3.4927 27 1 0.4020 -2.3578 -1.5734 28 1 0.8397 -1.0866 -2.7545 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260549832.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:09 Heat of formation + Delta-G solvation = -21.730829 kcal Electronic energy + Delta-G solvation = -10764.418462 eV Core-core repulsion = 8905.327861 eV Total energy + Delta-G solvation = -1859.090601 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -38.61203 -36.10183 -33.24858 -30.35403 -27.81498 -27.09543 -24.39434 -21.21600 -20.83999 -17.71097 -17.48190 -16.83277 -16.51546 -15.23341 -15.01514 -14.55906 -14.22276 -13.75869 -13.37758 -12.96019 -12.89040 -12.77174 -12.49287 -12.29982 -12.03003 -11.62538 -11.46695 -11.18248 -10.91486 -10.79599 -9.28349 -8.71909 -8.45650 -6.19818 0.92952 1.29930 1.39137 1.47458 1.52094 2.11296 2.28985 3.29439 3.73365 3.87689 3.99323 4.21433 4.35094 4.59649 4.68882 4.80973 4.84551 4.88513 5.06249 5.19123 5.24391 5.30940 5.40433 5.55996 6.10775 6.34758 6.92979 7.18425 7.46754 8.54953 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.052688 B = 0.009428 C = 0.009240 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 531.299363 B = 2969.040012 C = 3029.426347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.368 4.368 2 C 0.026 3.974 3 C -0.505 4.505 4 H 0.065 0.935 5 C 0.031 3.969 6 N -0.833 5.833 7 Si 0.966 3.034 8 H -0.256 1.256 9 H -0.271 1.271 10 H -0.274 1.274 11 C -0.062 4.062 12 C -0.075 4.075 13 H 0.062 0.938 14 C -0.116 4.116 15 C -0.052 4.052 16 S -0.358 6.358 17 C -0.034 4.034 18 H 0.056 0.944 19 H 0.045 0.955 20 H 0.275 0.725 21 H 0.055 0.945 22 H 0.067 0.933 23 H 0.105 0.895 24 H 0.085 0.915 25 H 0.127 0.873 26 H 0.097 0.903 27 H 0.079 0.921 28 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.208 -7.039 -1.090 10.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.409 4.409 2 C 0.024 3.976 3 C -0.537 4.537 4 H 0.083 0.917 5 C -0.182 4.182 6 N -0.460 5.460 7 Si 0.788 3.212 8 H -0.180 1.180 9 H -0.196 1.196 10 H -0.199 1.199 11 C -0.100 4.100 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.154 4.154 15 C -0.199 4.199 16 S -0.132 6.132 17 C -0.182 4.182 18 H 0.074 0.926 19 H 0.064 0.936 20 H 0.085 0.915 21 H 0.074 0.926 22 H 0.086 0.914 23 H 0.123 0.877 24 H 0.104 0.896 25 H 0.145 0.855 26 H 0.115 0.885 27 H 0.098 0.902 28 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.447 -7.480 -2.119 10.100 hybrid contribution 0.173 1.693 0.802 1.881 sum 6.620 -5.787 -1.316 8.891 Atomic orbital electron populations 1.23088 0.95212 0.96216 1.26414 1.18774 0.93172 0.92881 0.92771 1.19482 1.01269 0.94395 1.38510 0.91691 1.26634 0.94784 1.04353 0.92430 1.69937 1.20272 1.31341 1.24470 0.85417 0.79172 0.77683 0.78926 1.17950 1.19614 1.19927 1.20584 0.99332 0.95376 0.94740 1.21781 0.93474 0.98355 0.95914 0.91938 1.22543 1.01408 0.96024 0.95433 1.24269 0.91337 1.06277 0.98052 1.87363 1.18725 1.54568 1.52569 1.23839 1.00786 0.96820 0.96785 0.92572 0.93630 0.91468 0.92584 0.91418 0.87694 0.89650 0.85484 0.88462 0.90198 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.37 -20.48 12.32 67.08 0.83 -19.65 15 2 C 0.03 1.33 4.61 -20.16 -0.09 1.24 15 3 C -0.51 -27.42 9.04 23.22 0.21 -27.21 15 4 H 0.06 3.37 7.91 -2.91 -0.02 3.35 15 5 C 0.03 1.63 5.09 85.37 0.43 2.07 15 6 N -0.83 -46.95 11.03 21.89 0.24 -46.71 15 7 Si 0.97 40.61 29.60 68.60 2.03 42.64 15 8 H -0.26 -10.32 7.11 99.48 0.71 -9.61 15 9 H -0.27 -10.97 7.11 99.48 0.71 -10.26 15 10 H -0.27 -11.34 7.11 99.48 0.71 -10.64 15 11 C -0.06 -2.51 4.72 29.85 0.14 -2.37 15 12 C -0.08 -2.74 2.59 -10.07 -0.03 -2.77 15 13 H 0.06 2.55 8.14 -2.39 -0.02 2.53 15 14 C -0.12 -3.01 5.74 31.47 0.18 -2.82 15 15 C -0.05 -1.26 7.37 72.57 0.54 -0.73 15 16 S -0.36 -12.02 23.26 -56.49 -1.31 -13.33 15 17 C -0.03 -1.36 5.88 72.42 0.43 -0.93 15 18 H 0.06 3.43 6.25 -2.91 -0.02 3.41 15 19 H 0.05 2.39 7.55 -2.91 -0.02 2.37 15 20 H 0.28 14.31 8.29 -92.71 -0.77 13.54 15 21 H 0.06 2.16 7.92 -2.39 -0.02 2.14 15 22 H 0.07 2.54 8.12 -2.39 -0.02 2.52 15 23 H 0.10 2.27 8.14 -2.39 -0.02 2.25 15 24 H 0.08 2.08 8.11 -2.39 -0.02 2.06 15 25 H 0.13 2.36 8.14 -2.38 -0.02 2.34 15 26 H 0.10 2.20 8.14 -2.39 -0.02 2.18 15 27 H 0.08 3.26 7.24 -2.39 -0.02 3.24 15 28 H 0.06 2.97 8.14 -2.39 -0.02 2.95 15 Total: -1.00 -60.90 244.68 4.71 -56.19 By element: Atomic # 1 Polarization: 13.27 SS G_CDS: 1.12 Total: 14.39 kcal Atomic # 6 Polarization: -55.81 SS G_CDS: 2.63 Total: -53.18 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.24 Total: -46.71 kcal Atomic # 14 Polarization: 40.61 SS G_CDS: 2.03 Total: 42.64 kcal Atomic # 16 Polarization: -12.02 SS G_CDS: -1.31 Total: -13.33 kcal Total: -60.90 4.71 -56.19 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549832.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.459 kcal (2) G-P(sol) polarization free energy of solvation -60.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds