Wall clock time and date at job start Mon Mar 30 2020 02:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.35030 * 1 3 3 C 1.40071 * 120.00641 * 2 1 4 4 H 1.07997 * 120.00666 * 154.64134 * 3 2 1 5 5 C 1.40312 * 119.99587 * 334.63658 * 3 2 1 6 6 N 1.30692 * 120.00092 * 343.08474 * 5 3 2 7 7 Si 1.86802 * 119.99971 * 163.08217 * 5 3 2 8 8 H 1.48503 * 109.46994 * 60.00008 * 7 5 3 9 9 H 1.48497 * 109.47208 * 180.02562 * 7 5 3 10 10 H 1.48503 * 109.46992 * 300.00263 * 7 5 3 11 11 C 1.50705 * 119.99739 * 179.71904 * 2 1 3 12 12 C 1.53004 * 109.46948 * 95.00034 * 11 2 1 13 13 H 1.08998 * 108.84906 * 305.70173 * 12 11 2 14 14 C 1.52936 * 108.88709 * 187.12637 * 12 11 2 15 15 C 1.55000 * 109.04370 * 208.99638 * 14 12 11 16 16 S 1.83994 * 100.82126 * 41.60580 * 15 14 12 17 17 C 1.53707 * 108.88695 * 64.27926 * 12 11 2 18 18 H 1.07994 * 120.00270 * 174.29571 * 1 2 3 19 19 H 1.08002 * 119.99456 * 354.28940 * 1 2 3 20 20 H 0.96997 * 119.99881 * 180.02562 * 6 5 3 21 21 H 1.08995 * 109.47135 * 215.00094 * 11 2 1 22 22 H 1.08998 * 109.46854 * 335.00560 * 11 2 1 23 23 H 1.08998 * 109.60703 * 329.03574 * 14 12 11 24 24 H 1.08997 * 109.60468 * 89.17448 * 14 12 11 25 25 H 1.09006 * 111.23143 * 283.70097 * 15 14 12 26 26 H 1.08997 * 111.15164 * 159.47876 * 15 14 12 27 27 H 1.08998 * 110.34154 * 242.49555 * 17 12 11 28 28 H 1.09000 * 110.34101 * 4.74488 * 17 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3503 0.0000 0.0000 3 6 2.0508 1.2130 0.0000 4 1 3.0527 1.2580 0.4005 5 6 1.4507 2.3696 -0.5205 6 7 0.4008 2.2702 -1.2924 7 14 2.1525 4.0514 -0.1102 8 1 3.5571 4.1310 -0.5855 9 1 1.3430 5.1020 -0.7783 10 1 2.1148 4.2582 1.3599 11 6 2.1038 -1.3052 0.0064 12 6 2.4676 -1.6910 -1.4288 13 1 1.5601 -1.6981 -2.0324 14 6 3.0712 -3.0962 -1.4258 15 6 4.0672 -3.2214 -2.6068 16 16 4.9137 -1.5901 -2.5191 17 6 3.4347 -0.6399 -1.9966 18 1 -0.5400 -0.9306 -0.0930 19 1 -0.5399 0.9307 0.0931 20 1 -0.0138 3.0697 -1.6526 21 1 3.0144 -1.1961 0.5953 22 1 1.4787 -2.0833 0.4444 23 1 3.5946 -3.2675 -0.4851 24 1 2.2780 -3.8351 -1.5395 25 1 3.5424 -3.3414 -3.5547 26 1 4.7702 -4.0382 -2.4435 27 1 2.9863 -0.1357 -2.8527 28 1 3.7020 0.0841 -1.2269 RHF calculation, no. of doubly occupied orbitals= 34 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260549835.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:08:12 Heat of formation + Delta-G solvation = -5.026376 kcal Electronic energy + Delta-G solvation = -10836.175550 eV Core-core repulsion = 8977.809309 eV Total energy + Delta-G solvation = -1858.366241 eV No. of doubly occupied orbitals = 34 Molecular weight (most abundant/longest-lived isotopes) = 198.077 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -37.06653 -34.21255 -31.40899 -28.81009 -26.29105 -24.75562 -23.20718 -19.73667 -18.58433 -16.21253 -15.73089 -15.10960 -14.73441 -13.88977 -13.31886 -12.89639 -12.43600 -12.04948 -11.78940 -11.49414 -11.19226 -11.02604 -10.89554 -10.55794 -10.33701 -9.97284 -9.63621 -9.32220 -9.25678 -8.85611 -7.27410 -7.24379 -6.42789 -4.07316 2.34851 2.88737 3.12234 3.20502 3.24579 4.08917 4.18964 4.99221 5.09294 5.38062 5.45460 5.62749 5.78743 5.83139 6.06385 6.19379 6.40445 6.59420 6.64877 6.88730 7.01194 7.03985 7.37276 7.63424 8.20357 8.48241 9.00174 9.25501 9.48202 10.56245 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.043310 B = 0.011391 C = 0.009765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 646.339954 B = 2457.461117 C = 2866.769383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.344 4.344 2 C 0.027 3.973 3 C -0.474 4.474 4 H 0.061 0.939 5 C 0.079 3.921 6 N -0.801 5.801 7 Si 0.889 3.111 8 H -0.269 1.269 9 H -0.282 1.282 10 H -0.268 1.268 11 C -0.070 4.070 12 C -0.081 4.081 13 H 0.074 0.926 14 C -0.121 4.121 15 C -0.063 4.063 16 S -0.347 6.347 17 C -0.035 4.035 18 H 0.038 0.962 19 H 0.088 0.912 20 H 0.271 0.729 21 H 0.053 0.947 22 H 0.046 0.954 23 H 0.074 0.926 24 H 0.072 0.928 25 H 0.083 0.917 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.469 -6.511 -1.663 8.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.385 4.385 2 C 0.026 3.974 3 C -0.505 4.505 4 H 0.079 0.921 5 C -0.137 4.137 6 N -0.428 5.428 7 Si 0.715 3.285 8 H -0.194 1.194 9 H -0.208 1.208 10 H -0.193 1.193 11 C -0.108 4.108 12 C -0.101 4.101 13 H 0.092 0.908 14 C -0.160 4.160 15 C -0.211 4.211 16 S -0.122 6.122 17 C -0.182 4.182 18 H 0.056 0.944 19 H 0.106 0.894 20 H 0.082 0.918 21 H 0.071 0.929 22 H 0.064 0.936 23 H 0.093 0.907 24 H 0.091 0.909 25 H 0.102 0.898 26 H 0.115 0.885 27 H 0.102 0.898 28 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.474 -6.039 -2.037 8.402 hybrid contribution -0.952 0.607 0.206 1.148 sum 4.522 -5.432 -1.831 7.301 Atomic orbital electron populations 1.23303 0.94648 0.97400 1.23180 1.18347 0.93183 0.90807 0.95074 1.19008 1.00844 0.93160 1.37534 0.92091 1.25701 0.94577 1.00236 0.93140 1.69816 1.19079 1.30169 1.23761 0.86695 0.79656 0.82484 0.79678 1.19441 1.20780 1.19310 1.20750 0.99217 0.97572 0.93257 1.21507 0.98387 0.91103 0.99142 0.90767 1.22495 0.97927 0.97762 0.97787 1.24206 0.99672 0.95780 1.01488 1.87610 1.23921 1.09315 1.91351 1.24242 0.90862 0.98926 1.04149 0.94378 0.89412 0.91844 0.92853 0.93568 0.90703 0.90897 0.89799 0.88531 0.89811 0.85909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.34 -9.31 12.92 29.59 0.38 -8.92 15 2 C 0.03 0.70 4.72 -105.07 -0.50 0.20 15 3 C -0.47 -12.54 7.04 -38.12 -0.27 -12.80 15 4 H 0.06 1.57 7.54 -52.49 -0.40 1.18 15 5 C 0.08 2.06 5.09 -17.26 -0.09 1.98 15 6 N -0.80 -21.87 11.04 55.57 0.61 -21.26 15 7 Si 0.89 19.83 29.60 -169.99 -5.03 14.80 15 8 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 9 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 10 H -0.27 -5.97 7.11 56.52 0.40 -5.56 15 11 C -0.07 -1.47 4.48 -27.88 -0.12 -1.59 15 12 C -0.08 -1.53 2.67 -90.28 -0.24 -1.78 15 13 H 0.07 1.50 8.13 -51.93 -0.42 1.07 15 14 C -0.12 -1.81 5.78 -25.71 -0.15 -1.96 15 15 C -0.06 -0.89 7.52 38.21 0.29 -0.60 15 16 S -0.35 -6.18 23.22 -107.50 -2.50 -8.67 15 17 C -0.03 -0.69 6.31 37.53 0.24 -0.46 15 18 H 0.04 0.97 8.06 -52.49 -0.42 0.55 15 19 H 0.09 2.56 6.27 -52.49 -0.33 2.23 15 20 H 0.27 6.90 8.29 -40.82 -0.34 6.56 15 21 H 0.05 1.09 8.12 -51.93 -0.42 0.67 15 22 H 0.05 0.91 8.03 -51.93 -0.42 0.50 15 23 H 0.07 1.10 7.83 -51.93 -0.41 0.69 15 24 H 0.07 0.96 8.14 -51.93 -0.42 0.54 15 25 H 0.08 1.10 8.14 -51.93 -0.42 0.68 15 26 H 0.10 1.15 8.14 -51.93 -0.42 0.73 15 27 H 0.08 1.75 8.14 -51.93 -0.42 1.33 15 28 H 0.12 2.71 5.53 -51.93 -0.29 2.42 15 LS Contribution 242.08 15.07 3.65 3.65 Total: -1.00 -27.50 242.08 -7.65 -35.16 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -3.93 Total: 2.26 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -0.46 Total: -25.93 kcal Atomic # 7 Polarization: -21.87 SS G_CDS: 0.61 Total: -21.26 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -5.03 Total: 14.80 kcal Atomic # 16 Polarization: -6.18 SS G_CDS: -2.50 Total: -8.67 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.50 -7.65 -35.16 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260549835.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.132 kcal (2) G-P(sol) polarization free energy of solvation -27.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds