Wall clock time and date at job start Mon Mar 30 2020 01:59:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.33878 * 122.75811 * 2 1
4 4 O 1.21222 * 125.40137 * 0.02562 * 3 2 1
5 5 C 1.51312 * 109.20547 * 180.02562 * 3 2 1
6 6 C 1.54229 * 103.55582 * 359.97438 * 5 3 2
7 7 N 1.46905 * 110.60868 * 241.48517 * 6 5 3
8 8 C 1.50699 * 110.60453 * 118.67386 * 6 5 3
9 9 H 1.08002 * 120.00334 * 2.15142 * 8 6 5
10 10 C 1.37884 * 119.99950 * 182.14650 * 8 6 5
11 11 N 1.31512 * 119.99771 * 0.02562 * 10 8 6
12 12 Si 1.86799 * 119.99838 * 180.02562 * 10 8 6
13 13 H 1.48498 * 109.47147 * 60.00117 * 12 10 8
14 14 H 1.48504 * 109.47062 * 180.02562 * 12 10 8
15 15 H 1.48501 * 109.47114 * 300.00055 * 12 10 8
16 16 C 1.34222 * 122.71559 * 180.10548 * 2 1 3
17 17 O 1.21225 * 125.58266 * 0.02562 * 16 2 1
18 18 H 1.09001 * 109.47048 * 359.97071 * 1 2 3
19 19 H 1.08998 * 109.46769 * 119.97788 * 1 2 3
20 20 H 1.09000 * 109.46485 * 239.97274 * 1 2 3
21 21 H 1.09005 * 110.60618 * 241.48408 * 5 3 2
22 22 H 1.09001 * 110.74221 * 118.58026 * 5 3 2
23 23 H 1.00901 * 110.99869 * 177.85555 * 7 6 5
24 24 H 1.00896 * 110.99543 * 301.80678 * 7 6 5
25 25 H 0.97003 * 119.99533 * 179.97438 * 11 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1895 1.1259 0.0000
4 8 1.7385 2.2511 0.0004
5 6 3.6604 0.7713 -0.0006
6 6 3.6605 -0.7710 -0.0003
7 7 4.3176 -1.2878 1.2077
8 6 4.3368 -1.3015 -1.2382
9 1 4.7676 -0.6169 -1.9538
10 6 4.4057 -2.6611 -1.4571
11 7 3.8807 -3.4949 -0.5860
12 14 5.2446 -3.3188 -2.9911
13 1 6.6634 -2.8807 -3.0058
14 1 5.1841 -4.8026 -2.9909
15 1 4.5526 -2.7958 -4.1965
16 6 2.1905 -1.1293 -0.0021
17 8 1.7422 -2.2556 -0.0046
18 1 -0.3633 1.0277 0.0005
19 1 -0.3633 -0.5135 -0.8902
20 1 -0.3632 -0.5143 0.8898
21 1 4.1479 1.1547 0.8958
22 1 4.1497 1.1551 -0.8959
23 1 4.2900 -2.2962 1.2310
24 1 5.2659 -0.9503 1.2759
25 1 3.9289 -4.4513 -0.7402
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260754476.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:59:31
Heat of formation + Delta-G solvation = -59.825143 kcal
Electronic energy + Delta-G solvation = -13105.654316 eV
Core-core repulsion = 10698.618608 eV
Total energy + Delta-G solvation = -2407.035709 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 198.079 amu
Computer time = 0.13 seconds
Orbital eigenvalues (eV)
-40.73223 -37.50694 -34.94792 -34.46350 -31.83552 -29.29432 -26.31865 -25.67591
-23.33153 -20.53215 -18.83140 -16.97873 -16.15035 -15.59448 -15.10561 -14.88739
-14.24793 -13.35803 -13.26097 -13.06924 -12.72383 -12.05000 -12.04868 -11.92617
-11.16872 -11.06628 -10.84516 -10.50705 -10.11631 -9.41520 -9.06301 -8.84634
-8.60320 -7.47577 -6.22164 -4.44188 2.57050 3.17122 3.24119 3.24988
3.50947 3.89205 4.22100 4.99743 5.11076 5.51075 5.71248 5.78116
5.84495 6.03194 6.09899 6.36880 6.58287 6.72099 7.56758 7.65844
7.86533 8.26336 8.35337 8.63544 8.83836 9.09722 9.27308 10.73289
Molecular weight = 198.08amu
Principal moments of inertia in cm(-1)
A = 0.045602 B = 0.013961 C = 0.013129
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 613.858494 B = 2005.066332 C = 2132.161191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.069 3.931
2 N -0.584 5.584
3 C 0.536 3.464
4 O -0.527 6.527
5 C -0.148 4.148
6 C 0.219 3.781
7 N -0.838 5.838
8 C -0.568 4.568
9 H 0.069 0.931
10 C 0.074 3.926
11 N -0.839 5.839
12 Si 0.901 3.099
13 H -0.274 1.274
14 H -0.284 1.284
15 H -0.276 1.276
16 C 0.534 3.466
17 O -0.450 6.450
18 H 0.081 0.919
19 H 0.065 0.935
20 H 0.066 0.934
21 H 0.105 0.895
22 H 0.107 0.893
23 H 0.365 0.635
24 H 0.327 0.673
25 H 0.270 0.730
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.747 3.708 0.704 3.847
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.073 4.073
2 N -0.330 5.330
3 C 0.327 3.673
4 O -0.404 6.404
5 C -0.188 4.188
6 C 0.124 3.876
7 N -0.371 5.371
8 C -0.607 4.607
9 H 0.087 0.913
10 C -0.136 4.136
11 N -0.472 5.472
12 Si 0.728 3.272
13 H -0.199 1.199
14 H -0.210 1.210
15 H -0.201 1.201
16 C 0.323 3.677
17 O -0.315 6.315
18 H 0.100 0.900
19 H 0.084 0.916
20 H 0.085 0.915
21 H 0.123 0.877
22 H 0.126 0.874
23 H 0.183 0.817
24 H 0.138 0.862
25 H 0.080 0.920
Dipole moment (debyes) X Y Z Total
from point charges -1.895 3.763 1.175 4.373
hybrid contribution 0.847 -0.918 -1.636 2.058
sum -1.048 2.845 -0.461 3.066
Atomic orbital electron populations
1.21715 0.79897 1.03170 1.02534 1.47182 1.08230 1.10518 1.67019
1.20969 0.90897 0.83281 0.72180 1.90634 1.78617 1.21893 1.49222
1.22636 0.92210 0.99098 1.04888 1.18866 0.88538 0.88620 0.91537
1.59316 1.21171 1.18371 1.38292 1.21405 1.39514 0.92332 1.07498
0.91302 1.25145 0.94364 0.97008 0.97052 1.69838 1.39535 1.03367
1.34501 0.86508 0.79917 0.77861 0.82921 1.19882 1.20981 1.20094
1.21942 0.90284 0.82831 0.72685 1.90652 1.77364 1.20690 1.42802
0.90047 0.91580 0.91538 0.87668 0.87443 0.81731 0.86218 0.92000
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 1.20 10.66 59.85 0.64 1.84 15
2 N -0.58 -12.41 2.96 -122.63 -0.36 -12.77 15
3 C 0.54 11.13 8.08 -11.09 -0.09 11.04 15
4 O -0.53 -11.43 17.23 5.61 0.10 -11.34 15
5 C -0.15 -2.92 6.42 -26.94 -0.17 -3.09 15
6 C 0.22 5.07 0.89 -132.96 -0.12 4.95 15
7 N -0.84 -18.49 8.85 -0.36 0.00 -18.50 15
8 C -0.57 -14.23 8.26 -34.44 -0.28 -14.52 15
9 H 0.07 1.67 7.39 -52.49 -0.39 1.29 15
10 C 0.07 1.89 5.22 -17.82 -0.09 1.80 15
11 N -0.84 -22.44 9.27 55.43 0.51 -21.92 15
12 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 15
13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15
14 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15
15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15
16 C 0.53 13.04 6.93 -10.94 -0.08 12.96 15
17 O -0.45 -12.27 15.41 5.61 0.09 -12.19 15
18 H 0.08 1.28 7.41 -51.93 -0.38 0.90 15
19 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15
20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15
21 H 0.11 1.85 7.97 -51.93 -0.41 1.44 15
22 H 0.11 1.99 7.47 -51.93 -0.39 1.60 15
23 H 0.36 8.89 7.00 -39.29 -0.27 8.62 15
24 H 0.33 6.46 9.04 -39.29 -0.36 6.11 15
25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15
LS Contribution 221.91 15.07 3.34 3.34
Total: -1.00 -28.98 221.91 -3.73 -32.70
By element:
Atomic # 1 Polarization: 12.85 SS G_CDS: -2.18 Total: 10.67 kcal
Atomic # 6 Polarization: 15.18 SS G_CDS: -0.20 Total: 14.99 kcal
Atomic # 7 Polarization: -53.33 SS G_CDS: 0.15 Total: -53.19 kcal
Atomic # 8 Polarization: -23.70 SS G_CDS: 0.18 Total: -23.52 kcal
Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal
Total LS contribution 3.34 Total: 3.34 kcal
Total: -28.98 -3.73 -32.70 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260754476.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.121 kcal
(2) G-P(sol) polarization free energy of solvation -28.977 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.098 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.704 kcal
(6) G-S(sol) free energy of system = (1) + (5) -59.825 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.13 seconds