Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.33878 * 122.75811 * 2 1 4 4 O 1.21222 * 125.40137 * 0.02562 * 3 2 1 5 5 C 1.51312 * 109.20547 * 180.02562 * 3 2 1 6 6 C 1.54229 * 103.55582 * 359.97438 * 5 3 2 7 7 N 1.46905 * 110.60868 * 241.48517 * 6 5 3 8 8 C 1.50699 * 110.60453 * 118.67386 * 6 5 3 9 9 H 1.08002 * 120.00334 * 2.15142 * 8 6 5 10 10 C 1.37884 * 119.99950 * 182.14650 * 8 6 5 11 11 N 1.31512 * 119.99771 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99838 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47147 * 60.00117 * 12 10 8 14 14 H 1.48504 * 109.47062 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47114 * 300.00055 * 12 10 8 16 16 C 1.34222 * 122.71559 * 180.10548 * 2 1 3 17 17 O 1.21225 * 125.58266 * 0.02562 * 16 2 1 18 18 H 1.09001 * 109.47048 * 359.97071 * 1 2 3 19 19 H 1.08998 * 109.46769 * 119.97788 * 1 2 3 20 20 H 1.09000 * 109.46485 * 239.97274 * 1 2 3 21 21 H 1.09005 * 110.60618 * 241.48408 * 5 3 2 22 22 H 1.09001 * 110.74221 * 118.58026 * 5 3 2 23 23 H 1.00901 * 110.99869 * 177.85555 * 7 6 5 24 24 H 1.00896 * 110.99543 * 301.80678 * 7 6 5 25 25 H 0.97003 * 119.99533 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1895 1.1259 0.0000 4 8 1.7385 2.2511 0.0004 5 6 3.6604 0.7713 -0.0006 6 6 3.6605 -0.7710 -0.0003 7 7 4.3176 -1.2878 1.2077 8 6 4.3368 -1.3015 -1.2382 9 1 4.7676 -0.6169 -1.9538 10 6 4.4057 -2.6611 -1.4571 11 7 3.8807 -3.4949 -0.5860 12 14 5.2446 -3.3188 -2.9911 13 1 6.6634 -2.8807 -3.0058 14 1 5.1841 -4.8026 -2.9909 15 1 4.5526 -2.7958 -4.1965 16 6 2.1905 -1.1293 -0.0021 17 8 1.7422 -2.2556 -0.0046 18 1 -0.3633 1.0277 0.0005 19 1 -0.3633 -0.5135 -0.8902 20 1 -0.3632 -0.5143 0.8898 21 1 4.1479 1.1547 0.8958 22 1 4.1497 1.1551 -0.8959 23 1 4.2900 -2.2962 1.2310 24 1 5.2659 -0.9503 1.2759 25 1 3.9289 -4.4513 -0.7402 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260754476.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = -59.825143 kcal Electronic energy + Delta-G solvation = -13105.654316 eV Core-core repulsion = 10698.618608 eV Total energy + Delta-G solvation = -2407.035709 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.73223 -37.50694 -34.94792 -34.46350 -31.83552 -29.29432 -26.31865 -25.67591 -23.33153 -20.53215 -18.83140 -16.97873 -16.15035 -15.59448 -15.10561 -14.88739 -14.24793 -13.35803 -13.26097 -13.06924 -12.72383 -12.05000 -12.04868 -11.92617 -11.16872 -11.06628 -10.84516 -10.50705 -10.11631 -9.41520 -9.06301 -8.84634 -8.60320 -7.47577 -6.22164 -4.44188 2.57050 3.17122 3.24119 3.24988 3.50947 3.89205 4.22100 4.99743 5.11076 5.51075 5.71248 5.78116 5.84495 6.03194 6.09899 6.36880 6.58287 6.72099 7.56758 7.65844 7.86533 8.26336 8.35337 8.63544 8.83836 9.09722 9.27308 10.73289 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045602 B = 0.013961 C = 0.013129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.858494 B = 2005.066332 C = 2132.161191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.584 5.584 3 C 0.536 3.464 4 O -0.527 6.527 5 C -0.148 4.148 6 C 0.219 3.781 7 N -0.838 5.838 8 C -0.568 4.568 9 H 0.069 0.931 10 C 0.074 3.926 11 N -0.839 5.839 12 Si 0.901 3.099 13 H -0.274 1.274 14 H -0.284 1.284 15 H -0.276 1.276 16 C 0.534 3.466 17 O -0.450 6.450 18 H 0.081 0.919 19 H 0.065 0.935 20 H 0.066 0.934 21 H 0.105 0.895 22 H 0.107 0.893 23 H 0.365 0.635 24 H 0.327 0.673 25 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.747 3.708 0.704 3.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.330 5.330 3 C 0.327 3.673 4 O -0.404 6.404 5 C -0.188 4.188 6 C 0.124 3.876 7 N -0.371 5.371 8 C -0.607 4.607 9 H 0.087 0.913 10 C -0.136 4.136 11 N -0.472 5.472 12 Si 0.728 3.272 13 H -0.199 1.199 14 H -0.210 1.210 15 H -0.201 1.201 16 C 0.323 3.677 17 O -0.315 6.315 18 H 0.100 0.900 19 H 0.084 0.916 20 H 0.085 0.915 21 H 0.123 0.877 22 H 0.126 0.874 23 H 0.183 0.817 24 H 0.138 0.862 25 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -1.895 3.763 1.175 4.373 hybrid contribution 0.847 -0.918 -1.636 2.058 sum -1.048 2.845 -0.461 3.066 Atomic orbital electron populations 1.21715 0.79897 1.03170 1.02534 1.47182 1.08230 1.10518 1.67019 1.20969 0.90897 0.83281 0.72180 1.90634 1.78617 1.21893 1.49222 1.22636 0.92210 0.99098 1.04888 1.18866 0.88538 0.88620 0.91537 1.59316 1.21171 1.18371 1.38292 1.21405 1.39514 0.92332 1.07498 0.91302 1.25145 0.94364 0.97008 0.97052 1.69838 1.39535 1.03367 1.34501 0.86508 0.79917 0.77861 0.82921 1.19882 1.20981 1.20094 1.21942 0.90284 0.82831 0.72685 1.90652 1.77364 1.20690 1.42802 0.90047 0.91580 0.91538 0.87668 0.87443 0.81731 0.86218 0.92000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.20 10.66 59.85 0.64 1.84 15 2 N -0.58 -12.41 2.96 -122.63 -0.36 -12.77 15 3 C 0.54 11.13 8.08 -11.09 -0.09 11.04 15 4 O -0.53 -11.43 17.23 5.61 0.10 -11.34 15 5 C -0.15 -2.92 6.42 -26.94 -0.17 -3.09 15 6 C 0.22 5.07 0.89 -132.96 -0.12 4.95 15 7 N -0.84 -18.49 8.85 -0.36 0.00 -18.50 15 8 C -0.57 -14.23 8.26 -34.44 -0.28 -14.52 15 9 H 0.07 1.67 7.39 -52.49 -0.39 1.29 15 10 C 0.07 1.89 5.22 -17.82 -0.09 1.80 15 11 N -0.84 -22.44 9.27 55.43 0.51 -21.92 15 12 Si 0.90 20.03 29.54 -169.99 -5.02 15.01 15 13 H -0.27 -5.93 7.11 56.52 0.40 -5.53 15 14 H -0.28 -6.34 7.11 56.52 0.40 -5.93 15 15 H -0.28 -6.20 7.11 56.52 0.40 -5.80 15 16 C 0.53 13.04 6.93 -10.94 -0.08 12.96 15 17 O -0.45 -12.27 15.41 5.61 0.09 -12.19 15 18 H 0.08 1.28 7.41 -51.93 -0.38 0.90 15 19 H 0.07 1.10 8.14 -51.93 -0.42 0.67 15 20 H 0.07 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.11 1.85 7.97 -51.93 -0.41 1.44 15 22 H 0.11 1.99 7.47 -51.93 -0.39 1.60 15 23 H 0.36 8.89 7.00 -39.29 -0.27 8.62 15 24 H 0.33 6.46 9.04 -39.29 -0.36 6.11 15 25 H 0.27 6.99 8.31 -40.82 -0.34 6.65 15 LS Contribution 221.91 15.07 3.34 3.34 Total: -1.00 -28.98 221.91 -3.73 -32.70 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -2.18 Total: 10.67 kcal Atomic # 6 Polarization: 15.18 SS G_CDS: -0.20 Total: 14.99 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: 0.15 Total: -53.19 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: 0.18 Total: -23.52 kcal Atomic # 14 Polarization: 20.03 SS G_CDS: -5.02 Total: 15.01 kcal Total LS contribution 3.34 Total: 3.34 kcal Total: -28.98 -3.73 -32.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260754476.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.121 kcal (2) G-P(sol) polarization free energy of solvation -28.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds