Wall clock time and date at job start Mon Mar 30 2020 01:59:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.33878 * 122.75811 * 2 1 4 4 O 1.21222 * 125.40137 * 0.02562 * 3 2 1 5 5 C 1.51312 * 109.20547 * 180.02562 * 3 2 1 6 6 C 1.54229 * 103.55582 * 359.97438 * 5 3 2 7 7 N 1.46905 * 110.60868 * 241.48517 * 6 5 3 8 8 C 1.50699 * 110.60453 * 118.67386 * 6 5 3 9 9 H 1.08002 * 120.00334 * 2.15142 * 8 6 5 10 10 C 1.37884 * 119.99950 * 182.14650 * 8 6 5 11 11 N 1.31512 * 119.99771 * 0.02562 * 10 8 6 12 12 Si 1.86799 * 119.99838 * 180.02562 * 10 8 6 13 13 H 1.48498 * 109.47147 * 60.00117 * 12 10 8 14 14 H 1.48504 * 109.47062 * 180.02562 * 12 10 8 15 15 H 1.48501 * 109.47114 * 300.00055 * 12 10 8 16 16 C 1.34222 * 122.71559 * 180.10548 * 2 1 3 17 17 O 1.21225 * 125.58266 * 0.02562 * 16 2 1 18 18 H 1.09001 * 109.47048 * 359.97071 * 1 2 3 19 19 H 1.08998 * 109.46769 * 119.97788 * 1 2 3 20 20 H 1.09000 * 109.46485 * 239.97274 * 1 2 3 21 21 H 1.09005 * 110.60618 * 241.48408 * 5 3 2 22 22 H 1.09001 * 110.74221 * 118.58026 * 5 3 2 23 23 H 1.00901 * 110.99869 * 177.85555 * 7 6 5 24 24 H 1.00896 * 110.99543 * 301.80678 * 7 6 5 25 25 H 0.97003 * 119.99533 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1895 1.1259 0.0000 4 8 1.7385 2.2511 0.0004 5 6 3.6604 0.7713 -0.0006 6 6 3.6605 -0.7710 -0.0003 7 7 4.3176 -1.2878 1.2077 8 6 4.3368 -1.3015 -1.2382 9 1 4.7676 -0.6169 -1.9538 10 6 4.4057 -2.6611 -1.4571 11 7 3.8807 -3.4949 -0.5860 12 14 5.2446 -3.3188 -2.9911 13 1 6.6634 -2.8807 -3.0058 14 1 5.1841 -4.8026 -2.9909 15 1 4.5526 -2.7958 -4.1965 16 6 2.1905 -1.1293 -0.0021 17 8 1.7422 -2.2556 -0.0046 18 1 -0.3633 1.0277 0.0005 19 1 -0.3633 -0.5135 -0.8902 20 1 -0.3632 -0.5143 0.8898 21 1 4.1479 1.1547 0.8958 22 1 4.1497 1.1551 -0.8959 23 1 4.2900 -2.2962 1.2310 24 1 5.2659 -0.9503 1.2759 25 1 3.9289 -4.4513 -0.7402 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260754476.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:59:31 Heat of formation + Delta-G solvation = -81.803143 kcal Electronic energy + Delta-G solvation = -13106.607354 eV Core-core repulsion = 10698.618608 eV Total energy + Delta-G solvation = -2407.988746 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.45213 -39.29997 -36.78551 -36.20299 -33.68207 -30.93826 -28.02899 -27.38615 -25.12130 -22.25873 -20.57425 -18.79145 -17.83738 -17.33035 -16.89177 -16.68467 -16.01130 -15.04592 -15.01476 -14.73092 -14.54026 -13.74559 -13.69335 -13.41903 -12.87021 -12.81433 -12.53638 -12.40428 -11.87893 -11.12988 -10.93532 -10.55362 -10.48112 -9.28421 -8.12291 -6.40115 0.84506 1.42410 1.44508 1.51278 1.88840 2.10603 2.38925 3.08853 3.48189 3.89911 4.01016 4.34687 4.41185 4.55496 4.67596 4.76620 4.98243 5.03142 5.62860 5.82785 6.10145 6.50812 6.60792 6.76679 7.04101 7.27839 7.34852 8.80145 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.045602 B = 0.013961 C = 0.013129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 613.858494 B = 2005.066332 C = 2132.161191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.587 5.587 3 C 0.538 3.462 4 O -0.533 6.533 5 C -0.138 4.138 6 C 0.206 3.794 7 N -0.832 5.832 8 C -0.579 4.579 9 H 0.073 0.927 10 C 0.030 3.970 11 N -0.864 5.864 12 Si 0.958 3.042 13 H -0.262 1.262 14 H -0.288 1.288 15 H -0.279 1.279 16 C 0.528 3.472 17 O -0.488 6.488 18 H 0.099 0.901 19 H 0.071 0.929 20 H 0.076 0.924 21 H 0.129 0.871 22 H 0.122 0.878 23 H 0.352 0.648 24 H 0.339 0.661 25 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.323 4.703 0.369 4.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.331 5.331 3 C 0.330 3.670 4 O -0.411 6.411 5 C -0.178 4.178 6 C 0.111 3.889 7 N -0.365 5.365 8 C -0.618 4.618 9 H 0.092 0.908 10 C -0.177 4.177 11 N -0.498 5.498 12 Si 0.783 3.217 13 H -0.187 1.187 14 H -0.214 1.214 15 H -0.205 1.205 16 C 0.318 3.682 17 O -0.356 6.356 18 H 0.118 0.882 19 H 0.089 0.911 20 H 0.094 0.906 21 H 0.147 0.853 22 H 0.140 0.860 23 H 0.168 0.832 24 H 0.151 0.849 25 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -1.463 4.811 0.843 5.099 hybrid contribution 0.680 -1.175 -1.510 2.030 sum -0.784 3.636 -0.667 3.779 Atomic orbital electron populations 1.21948 0.77818 1.04626 1.03368 1.47144 1.09770 1.09809 1.66424 1.21087 0.91253 0.82942 0.71705 1.90638 1.78849 1.21970 1.49598 1.22617 0.91893 0.96529 1.06760 1.19011 0.87915 0.90783 0.91189 1.59295 1.22095 1.17360 1.37702 1.21736 1.39330 0.92509 1.08208 0.90847 1.25827 0.94989 0.97498 0.99359 1.69976 1.40771 1.03149 1.35881 0.85622 0.79465 0.76892 0.79698 1.18679 1.21407 1.20498 1.22179 0.91263 0.82889 0.71885 1.90625 1.78122 1.22206 1.44658 0.88201 0.91065 0.90559 0.85295 0.85996 0.83198 0.84870 0.92549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 2.10 10.66 127.77 1.36 3.46 15 2 N -0.59 -24.02 2.96 -779.55 -2.31 -26.33 15 3 C 0.54 21.12 8.08 87.99 0.71 21.83 15 4 O -0.53 -21.74 17.23 -2.85 -0.05 -21.79 15 5 C -0.14 -5.09 6.42 30.46 0.20 -4.89 15 6 C 0.21 9.25 0.89 2.64 0.00 9.26 15 7 N -0.83 -35.81 8.85 -155.06 -1.37 -37.19 15 8 C -0.58 -28.24 8.26 25.60 0.21 -28.03 15 9 H 0.07 3.43 7.39 -2.91 -0.02 3.41 15 10 C 0.03 1.51 5.22 84.66 0.44 1.95 15 11 N -0.86 -46.31 9.27 21.45 0.20 -46.11 15 12 Si 0.96 40.60 29.54 68.60 2.03 42.62 15 13 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15 14 H -0.29 -12.30 7.11 99.48 0.71 -11.59 15 15 H -0.28 -11.91 7.11 99.48 0.71 -11.21 15 16 C 0.53 25.41 6.93 87.94 0.61 26.02 15 17 O -0.49 -26.72 15.41 -2.86 -0.04 -26.76 15 18 H 0.10 2.91 7.41 -2.39 -0.02 2.90 15 19 H 0.07 2.27 8.14 -2.39 -0.02 2.26 15 20 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15 21 H 0.13 4.12 7.97 -2.38 -0.02 4.10 15 22 H 0.12 4.15 7.47 -2.39 -0.02 4.13 15 23 H 0.35 17.10 7.00 -89.69 -0.63 16.47 15 24 H 0.34 12.87 9.04 -89.70 -0.81 12.06 15 25 H 0.27 13.88 8.31 -92.71 -0.77 13.11 15 Total: -1.00 -59.60 221.91 1.78 -57.82 By element: Atomic # 1 Polarization: 28.35 SS G_CDS: -0.20 Total: 28.15 kcal Atomic # 6 Polarization: 26.07 SS G_CDS: 3.53 Total: 29.60 kcal Atomic # 7 Polarization: -106.15 SS G_CDS: -3.48 Total: -109.63 kcal Atomic # 8 Polarization: -48.46 SS G_CDS: -0.09 Total: -48.56 kcal Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal Total: -59.60 1.78 -57.82 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260754476.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.988 kcal (2) G-P(sol) polarization free energy of solvation -59.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds