Wall clock time and date at job start Mon Mar 30 2020 01:59:31
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.33878 * 122.75811 * 2 1
4 4 O 1.21222 * 125.40137 * 0.02562 * 3 2 1
5 5 C 1.51312 * 109.20547 * 180.02562 * 3 2 1
6 6 C 1.54229 * 103.55582 * 359.97438 * 5 3 2
7 7 N 1.46905 * 110.60868 * 241.48517 * 6 5 3
8 8 C 1.50699 * 110.60453 * 118.67386 * 6 5 3
9 9 H 1.08002 * 120.00334 * 2.15142 * 8 6 5
10 10 C 1.37884 * 119.99950 * 182.14650 * 8 6 5
11 11 N 1.31512 * 119.99771 * 0.02562 * 10 8 6
12 12 Si 1.86799 * 119.99838 * 180.02562 * 10 8 6
13 13 H 1.48498 * 109.47147 * 60.00117 * 12 10 8
14 14 H 1.48504 * 109.47062 * 180.02562 * 12 10 8
15 15 H 1.48501 * 109.47114 * 300.00055 * 12 10 8
16 16 C 1.34222 * 122.71559 * 180.10548 * 2 1 3
17 17 O 1.21225 * 125.58266 * 0.02562 * 16 2 1
18 18 H 1.09001 * 109.47048 * 359.97071 * 1 2 3
19 19 H 1.08998 * 109.46769 * 119.97788 * 1 2 3
20 20 H 1.09000 * 109.46485 * 239.97274 * 1 2 3
21 21 H 1.09005 * 110.60618 * 241.48408 * 5 3 2
22 22 H 1.09001 * 110.74221 * 118.58026 * 5 3 2
23 23 H 1.00901 * 110.99869 * 177.85555 * 7 6 5
24 24 H 1.00896 * 110.99543 * 301.80678 * 7 6 5
25 25 H 0.97003 * 119.99533 * 179.97438 * 11 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1895 1.1259 0.0000
4 8 1.7385 2.2511 0.0004
5 6 3.6604 0.7713 -0.0006
6 6 3.6605 -0.7710 -0.0003
7 7 4.3176 -1.2878 1.2077
8 6 4.3368 -1.3015 -1.2382
9 1 4.7676 -0.6169 -1.9538
10 6 4.4057 -2.6611 -1.4571
11 7 3.8807 -3.4949 -0.5860
12 14 5.2446 -3.3188 -2.9911
13 1 6.6634 -2.8807 -3.0058
14 1 5.1841 -4.8026 -2.9909
15 1 4.5526 -2.7958 -4.1965
16 6 2.1905 -1.1293 -0.0021
17 8 1.7422 -2.2556 -0.0046
18 1 -0.3633 1.0277 0.0005
19 1 -0.3633 -0.5135 -0.8902
20 1 -0.3632 -0.5143 0.8898
21 1 4.1479 1.1547 0.8958
22 1 4.1497 1.1551 -0.8959
23 1 4.2900 -2.2962 1.2310
24 1 5.2659 -0.9503 1.2759
25 1 3.9289 -4.4513 -0.7402
RHF calculation, no. of doubly occupied orbitals= 36
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000260754476.mol2 25
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 01:59:31
Heat of formation + Delta-G solvation = -81.803143 kcal
Electronic energy + Delta-G solvation = -13106.607354 eV
Core-core repulsion = 10698.618608 eV
Total energy + Delta-G solvation = -2407.988746 eV
No. of doubly occupied orbitals = 36
Molecular weight
(most abundant/longest-lived isotopes) = 198.079 amu
Computer time = 0.16 seconds
Orbital eigenvalues (eV)
-42.45213 -39.29997 -36.78551 -36.20299 -33.68207 -30.93826 -28.02899 -27.38615
-25.12130 -22.25873 -20.57425 -18.79145 -17.83738 -17.33035 -16.89177 -16.68467
-16.01130 -15.04592 -15.01476 -14.73092 -14.54026 -13.74559 -13.69335 -13.41903
-12.87021 -12.81433 -12.53638 -12.40428 -11.87893 -11.12988 -10.93532 -10.55362
-10.48112 -9.28421 -8.12291 -6.40115 0.84506 1.42410 1.44508 1.51278
1.88840 2.10603 2.38925 3.08853 3.48189 3.89911 4.01016 4.34687
4.41185 4.55496 4.67596 4.76620 4.98243 5.03142 5.62860 5.82785
6.10145 6.50812 6.60792 6.76679 7.04101 7.27839 7.34852 8.80145
Molecular weight = 198.08amu
Principal moments of inertia in cm(-1)
A = 0.045602 B = 0.013961 C = 0.013129
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 613.858494 B = 2005.066332 C = 2132.161191
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.063 3.937
2 N -0.587 5.587
3 C 0.538 3.462
4 O -0.533 6.533
5 C -0.138 4.138
6 C 0.206 3.794
7 N -0.832 5.832
8 C -0.579 4.579
9 H 0.073 0.927
10 C 0.030 3.970
11 N -0.864 5.864
12 Si 0.958 3.042
13 H -0.262 1.262
14 H -0.288 1.288
15 H -0.279 1.279
16 C 0.528 3.472
17 O -0.488 6.488
18 H 0.099 0.901
19 H 0.071 0.929
20 H 0.076 0.924
21 H 0.129 0.871
22 H 0.122 0.878
23 H 0.352 0.648
24 H 0.339 0.661
25 H 0.265 0.735
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.323 4.703 0.369 4.729
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.078 4.078
2 N -0.331 5.331
3 C 0.330 3.670
4 O -0.411 6.411
5 C -0.178 4.178
6 C 0.111 3.889
7 N -0.365 5.365
8 C -0.618 4.618
9 H 0.092 0.908
10 C -0.177 4.177
11 N -0.498 5.498
12 Si 0.783 3.217
13 H -0.187 1.187
14 H -0.214 1.214
15 H -0.205 1.205
16 C 0.318 3.682
17 O -0.356 6.356
18 H 0.118 0.882
19 H 0.089 0.911
20 H 0.094 0.906
21 H 0.147 0.853
22 H 0.140 0.860
23 H 0.168 0.832
24 H 0.151 0.849
25 H 0.075 0.925
Dipole moment (debyes) X Y Z Total
from point charges -1.463 4.811 0.843 5.099
hybrid contribution 0.680 -1.175 -1.510 2.030
sum -0.784 3.636 -0.667 3.779
Atomic orbital electron populations
1.21948 0.77818 1.04626 1.03368 1.47144 1.09770 1.09809 1.66424
1.21087 0.91253 0.82942 0.71705 1.90638 1.78849 1.21970 1.49598
1.22617 0.91893 0.96529 1.06760 1.19011 0.87915 0.90783 0.91189
1.59295 1.22095 1.17360 1.37702 1.21736 1.39330 0.92509 1.08208
0.90847 1.25827 0.94989 0.97498 0.99359 1.69976 1.40771 1.03149
1.35881 0.85622 0.79465 0.76892 0.79698 1.18679 1.21407 1.20498
1.22179 0.91263 0.82889 0.71885 1.90625 1.78122 1.22206 1.44658
0.88201 0.91065 0.90559 0.85295 0.85996 0.83198 0.84870 0.92549
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.06 2.10 10.66 127.77 1.36 3.46 15
2 N -0.59 -24.02 2.96 -779.55 -2.31 -26.33 15
3 C 0.54 21.12 8.08 87.99 0.71 21.83 15
4 O -0.53 -21.74 17.23 -2.85 -0.05 -21.79 15
5 C -0.14 -5.09 6.42 30.46 0.20 -4.89 15
6 C 0.21 9.25 0.89 2.64 0.00 9.26 15
7 N -0.83 -35.81 8.85 -155.06 -1.37 -37.19 15
8 C -0.58 -28.24 8.26 25.60 0.21 -28.03 15
9 H 0.07 3.43 7.39 -2.91 -0.02 3.41 15
10 C 0.03 1.51 5.22 84.66 0.44 1.95 15
11 N -0.86 -46.31 9.27 21.45 0.20 -46.11 15
12 Si 0.96 40.60 29.54 68.60 2.03 42.62 15
13 H -0.26 -10.54 7.11 99.48 0.71 -9.83 15
14 H -0.29 -12.30 7.11 99.48 0.71 -11.59 15
15 H -0.28 -11.91 7.11 99.48 0.71 -11.21 15
16 C 0.53 25.41 6.93 87.94 0.61 26.02 15
17 O -0.49 -26.72 15.41 -2.86 -0.04 -26.76 15
18 H 0.10 2.91 7.41 -2.39 -0.02 2.90 15
19 H 0.07 2.27 8.14 -2.39 -0.02 2.26 15
20 H 0.08 2.37 8.14 -2.39 -0.02 2.35 15
21 H 0.13 4.12 7.97 -2.38 -0.02 4.10 15
22 H 0.12 4.15 7.47 -2.39 -0.02 4.13 15
23 H 0.35 17.10 7.00 -89.69 -0.63 16.47 15
24 H 0.34 12.87 9.04 -89.70 -0.81 12.06 15
25 H 0.27 13.88 8.31 -92.71 -0.77 13.11 15
Total: -1.00 -59.60 221.91 1.78 -57.82
By element:
Atomic # 1 Polarization: 28.35 SS G_CDS: -0.20 Total: 28.15 kcal
Atomic # 6 Polarization: 26.07 SS G_CDS: 3.53 Total: 29.60 kcal
Atomic # 7 Polarization: -106.15 SS G_CDS: -3.48 Total: -109.63 kcal
Atomic # 8 Polarization: -48.46 SS G_CDS: -0.09 Total: -48.56 kcal
Atomic # 14 Polarization: 40.60 SS G_CDS: 2.03 Total: 42.62 kcal
Total: -59.60 1.78 -57.82 kcal
The number of atoms in the molecule is 25
The average number of expansion shells was 15.00
The maximum number of expansion shells was 15
The minimum number of expansion shells was 15
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260754476.mol2 25
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -23.988 kcal
(2) G-P(sol) polarization free energy of solvation -59.596 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.584 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.780 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.816 kcal
(6) G-S(sol) free energy of system = (1) + (5) -81.803 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.16 seconds