Wall clock time and date at job start Mon Mar 30 2020 01:50:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31299 * 1 3 3 Si 1.86800 * 119.99846 * 2 1 4 4 H 1.48497 * 109.47005 * 239.99646 * 3 2 1 5 5 H 1.48501 * 109.46998 * 359.97438 * 3 2 1 6 6 H 1.48508 * 109.47003 * 119.99812 * 3 2 1 7 7 C 1.38982 * 120.00250 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00401 * 180.02562 * 7 2 1 9 9 N 1.37343 * 119.99724 * 0.02562 * 7 2 1 10 10 C 1.36565 * 126.09359 * 179.97438 * 9 7 2 11 11 C 1.35501 * 107.52717 * 180.02562 * 10 9 7 12 12 O 1.36181 * 126.05127 * 180.02562 * 11 10 9 13 13 C 1.42905 * 116.99876 * 179.97438 * 12 11 10 14 14 C 1.52997 * 109.46905 * 180.02562 * 13 12 11 15 15 O 1.42900 * 109.47214 * 65.00445 * 14 13 12 16 16 C 1.40503 * 107.89260 * 359.97438 * 11 10 9 17 17 N 1.30950 * 108.41658 * 0.02562 * 16 11 10 18 18 H 0.96999 * 120.00454 * 0.02562 * 1 2 3 19 19 H 1.08002 * 126.23480 * 359.75874 * 10 9 7 20 20 H 1.09000 * 109.47287 * 300.00174 * 13 12 11 21 21 H 1.09007 * 109.46855 * 59.99900 * 13 12 11 22 22 H 1.09002 * 109.46594 * 185.00381 * 14 13 12 23 23 H 1.09000 * 109.47034 * 304.99728 * 14 13 12 24 24 H 0.96696 * 114.00129 * 180.02562 * 15 14 13 25 25 H 1.08007 * 125.79035 * 180.02562 * 16 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3130 0.0000 0.0000 3 14 2.2469 1.6178 0.0000 4 1 3.1007 1.6964 -1.2124 5 1 1.2819 2.7464 -0.0006 6 1 3.1007 1.6964 1.2126 7 6 2.0080 -1.2036 0.0005 8 1 3.0879 -1.2036 0.0010 9 7 1.3212 -2.3930 0.0005 10 6 1.8746 -3.6415 0.0005 11 6 0.8588 -4.5382 0.0000 12 8 0.9865 -5.8940 0.0003 13 6 -0.2204 -6.6593 0.0001 14 6 0.1215 -8.1506 0.0011 15 8 0.7822 -8.4870 1.2227 16 6 -0.3497 -3.8214 0.0002 17 7 -0.0717 -2.5417 0.0003 18 1 -0.4851 0.8400 -0.0004 19 1 2.9297 -3.8721 -0.0031 20 1 -0.8026 -6.4198 0.8899 21 1 -0.8021 -6.4201 -0.8901 22 1 -0.7952 -8.7335 -0.0886 23 1 0.7776 -8.3735 -0.8403 24 1 1.0294 -9.4192 1.2924 25 1 -1.3399 -4.2527 0.0003 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260813377.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:33 Heat of formation + Delta-G solvation = -5.436814 kcal Electronic energy + Delta-G solvation = -12155.499455 eV Core-core repulsion = 9750.822201 eV Total energy + Delta-G solvation = -2404.677254 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -39.55273 -37.51803 -36.02744 -33.32564 -30.22914 -29.78130 -27.34485 -24.78253 -22.54892 -20.34928 -19.55300 -17.79925 -17.46151 -15.88798 -15.33805 -14.80737 -14.40253 -14.06022 -13.67435 -12.99058 -12.93708 -12.55298 -11.68993 -11.23981 -11.12795 -10.86804 -10.75461 -10.50594 -10.38920 -9.93803 -9.23281 -8.73081 -8.08413 -6.67463 -6.51189 -4.18478 3.01641 3.08641 3.12159 3.63961 3.82202 4.17719 4.25587 4.38601 4.84994 5.06281 5.23873 5.37839 5.60971 5.84540 6.02645 6.22613 6.65742 6.85607 7.05030 7.34894 7.61509 7.71065 8.01939 8.56969 8.82337 9.42412 9.66227 10.45667 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.109049 B = 0.007298 C = 0.006965 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 256.703913 B = 3835.768385 C = 4018.863486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.777 5.777 2 C 0.045 3.955 3 Si 0.936 3.064 4 H -0.267 1.267 5 H -0.277 1.277 6 H -0.267 1.267 7 C -0.321 4.321 8 H 0.117 0.883 9 N -0.143 5.143 10 C -0.077 4.077 11 C -0.070 4.070 12 O -0.308 6.308 13 C 0.071 3.929 14 C 0.080 3.920 15 O -0.564 6.564 16 C -0.110 4.110 17 N -0.246 5.246 18 H 0.274 0.726 19 H 0.151 0.849 20 H 0.055 0.945 21 H 0.063 0.937 22 H 0.058 0.942 23 H 0.053 0.947 24 H 0.373 0.627 25 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.562 -8.892 -0.783 8.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.404 5.404 2 C -0.171 4.171 3 Si 0.759 3.241 4 H -0.192 1.192 5 H -0.202 1.202 6 H -0.191 1.191 7 C -0.453 4.453 8 H 0.134 0.866 9 N 0.085 4.915 10 C -0.224 4.224 11 C -0.126 4.126 12 O -0.221 6.221 13 C -0.005 4.005 14 C 0.002 3.998 15 O -0.368 6.368 16 C -0.283 4.283 17 N -0.081 5.081 18 H 0.085 0.915 19 H 0.168 0.832 20 H 0.074 0.926 21 H 0.081 0.919 22 H 0.077 0.923 23 H 0.071 0.929 24 H 0.219 0.781 25 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.035 -7.067 -0.672 7.099 hybrid contribution 0.451 -0.750 -0.163 0.890 sum 0.417 -7.817 -0.835 7.873 Atomic orbital electron populations 1.70202 1.06122 1.27949 1.36143 1.25620 0.95717 1.00194 0.95563 0.85882 0.79107 0.79572 0.79500 1.19168 1.20201 1.19146 1.19840 0.91704 0.80391 1.53367 0.86551 1.44479 1.03571 1.03287 1.40161 1.20937 0.97112 0.84418 1.19918 1.18247 0.93473 0.81927 1.18926 1.85847 1.29530 1.14411 1.92334 1.22423 0.87931 0.89144 1.01041 1.22232 0.96034 0.94505 0.87011 1.86642 1.80206 1.31001 1.38984 1.23567 0.96808 0.92888 1.15011 1.78106 0.90762 1.14298 1.24916 0.91541 0.83193 0.92648 0.91938 0.92349 0.92912 0.78119 0.83277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -21.98 11.82 55.49 0.66 -21.32 15 2 C 0.05 1.20 5.50 -17.50 -0.10 1.10 15 3 Si 0.94 19.33 29.55 -169.99 -5.02 14.31 15 4 H -0.27 -5.35 7.11 56.52 0.40 -4.95 15 5 H -0.28 -5.63 7.11 56.52 0.40 -5.23 15 6 H -0.27 -5.36 7.11 56.52 0.40 -4.96 15 7 C -0.32 -8.81 10.25 -14.81 -0.15 -8.96 15 8 H 0.12 2.87 7.83 -52.49 -0.41 2.45 15 9 N -0.14 -4.10 3.74 -11.43 -0.04 -4.15 15 10 C -0.08 -2.03 11.49 -16.42 -0.19 -2.21 15 11 C -0.07 -1.78 6.97 -39.71 -0.28 -2.05 15 12 O -0.31 -6.91 10.19 -25.17 -0.26 -7.16 15 13 C 0.07 1.23 5.47 37.16 0.20 1.43 15 14 C 0.08 1.05 7.43 37.16 0.28 1.32 15 15 O -0.56 -8.04 13.62 -40.08 -0.55 -8.59 15 16 C -0.11 -2.84 11.09 -17.07 -0.19 -3.03 15 17 N -0.25 -7.26 10.41 30.78 0.32 -6.94 15 18 H 0.27 7.09 8.31 -40.82 -0.34 6.75 15 19 H 0.15 3.48 8.06 -52.49 -0.42 3.06 15 20 H 0.06 0.97 8.10 -51.93 -0.42 0.55 15 21 H 0.06 0.98 8.10 -51.92 -0.42 0.56 15 22 H 0.06 0.57 8.14 -51.93 -0.42 0.14 15 23 H 0.05 0.65 8.14 -51.93 -0.42 0.22 15 24 H 0.37 3.10 9.12 45.56 0.42 3.52 15 25 H 0.15 3.34 7.70 -52.48 -0.40 2.94 15 LS Contribution 232.33 15.07 3.50 3.50 Total: -1.00 -34.25 232.33 -3.46 -37.70 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -1.64 Total: 5.05 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -0.42 Total: -12.41 kcal Atomic # 7 Polarization: -33.34 SS G_CDS: 0.93 Total: -32.41 kcal Atomic # 8 Polarization: -14.95 SS G_CDS: -0.80 Total: -15.75 kcal Atomic # 14 Polarization: 19.33 SS G_CDS: -5.02 Total: 14.31 kcal Total LS contribution 3.50 Total: 3.50 kcal Total: -34.25 -3.46 -37.70 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260813377.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.268 kcal (2) G-P(sol) polarization free energy of solvation -34.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.705 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds