Wall clock time and date at job start Mon Mar 30 2020 01:55:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30741 * 1 3 3 Si 1.86797 * 120.00469 * 2 1 4 4 H 1.48494 * 109.47295 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46854 * 300.00206 * 3 2 1 6 6 H 1.48499 * 109.47400 * 59.99562 * 3 2 1 7 7 C 1.39976 * 119.99805 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99967 * 180.02562 * 7 2 1 9 9 C 1.41739 * 120.00030 * 0.02562 * 7 2 1 10 10 N 1.31870 * 126.58665 * 0.02562 * 9 7 2 11 11 O 1.21273 * 109.89785 * 179.97438 * 10 9 7 12 12 C 1.33794 * 110.33667 * 0.02562 * 11 10 9 13 13 C 1.50700 * 126.28350 * 179.97438 * 12 11 10 14 14 C 1.53003 * 109.47213 * 269.97086 * 13 12 11 15 15 C 1.52997 * 109.47143 * 179.97438 * 14 13 12 16 16 O 1.42896 * 109.46936 * 180.02562 * 15 14 13 17 17 N 1.30748 * 107.43045 * 359.97438 * 12 11 10 18 18 H 0.97004 * 119.99641 * 0.02562 * 1 2 3 19 19 H 1.08994 * 109.47110 * 29.97305 * 13 12 11 20 20 H 1.09005 * 109.46764 * 149.97595 * 13 12 11 21 21 H 1.09000 * 109.46979 * 300.00481 * 14 13 12 22 22 H 1.09006 * 109.46644 * 60.00041 * 14 13 12 23 23 H 1.08994 * 109.47179 * 300.00219 * 15 14 13 24 24 H 1.09005 * 109.46764 * 60.00552 * 15 14 13 25 25 H 0.96704 * 114.00240 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3074 0.0000 0.0000 3 14 2.2415 1.6176 0.0000 4 1 3.7014 1.3462 0.0006 5 1 1.8828 2.3964 -1.2125 6 1 1.8828 2.3965 1.2124 7 6 2.0072 -1.2122 0.0005 8 1 3.0873 -1.2123 0.0010 9 6 1.2985 -2.4397 0.0005 10 7 -0.0115 -2.5909 -0.0004 11 8 -0.2907 -3.7711 -0.0006 12 6 0.8230 -4.5125 0.0008 13 6 0.8923 -6.0179 0.0015 14 6 0.9151 -6.5266 1.4443 15 6 0.9848 -8.0550 1.4451 16 8 1.0055 -8.5302 2.7926 17 7 1.8403 -3.6910 0.0013 18 1 -0.4850 0.8401 -0.0004 19 1 0.0202 -6.4220 -0.5124 20 1 1.7983 -6.3401 -0.5117 21 1 1.7872 -6.1225 1.9583 22 1 0.0091 -6.2043 1.9576 23 1 0.1125 -8.4588 0.9313 24 1 1.8906 -8.3777 0.9317 25 1 1.0498 -9.4931 2.8695 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260911463.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:57 Heat of formation + Delta-G solvation = -37.681555 kcal Electronic energy + Delta-G solvation = -12087.062778 eV Core-core repulsion = 9680.987287 eV Total energy + Delta-G solvation = -2406.075491 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -45.28253 -38.12087 -36.46860 -35.74083 -34.44881 -31.71267 -28.69863 -27.37505 -23.90955 -23.11231 -22.13225 -19.29400 -18.27532 -18.04922 -17.71411 -16.57836 -16.51418 -15.75625 -14.94824 -14.37205 -14.05889 -13.49445 -13.25594 -13.12866 -12.99586 -12.44288 -12.19001 -12.02118 -11.93706 -11.91070 -11.21145 -11.13783 -10.79773 -10.16158 -8.66368 -6.81890 0.97992 1.33076 1.36229 1.55807 2.02666 2.18925 2.62808 3.18857 3.40850 3.61646 4.04940 4.22784 4.41043 4.53058 4.59801 4.66783 4.71217 5.13190 5.15568 5.20701 5.28224 5.74837 6.15075 6.43661 6.73481 7.00723 8.31871 8.43396 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.083711 B = 0.007116 C = 0.006900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 334.402462 B = 3934.124980 C = 4056.825456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.813 5.813 2 C 0.021 3.979 3 Si 1.012 2.988 4 H -0.252 1.252 5 H -0.261 1.261 6 H -0.262 1.262 7 C -0.471 4.471 8 H 0.094 0.906 9 C 0.256 3.744 10 N -0.465 5.465 11 O 0.006 5.994 12 C 0.139 3.861 13 C -0.004 4.004 14 C -0.115 4.115 15 C 0.086 3.914 16 O -0.601 6.601 17 N -0.549 5.549 18 H 0.287 0.713 19 H 0.125 0.875 20 H 0.118 0.882 21 H 0.050 0.950 22 H 0.057 0.943 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 -11.991 0.407 12.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.442 5.442 2 C -0.196 4.196 3 Si 0.830 3.170 4 H -0.175 1.175 5 H -0.185 1.185 6 H -0.187 1.187 7 C -0.512 4.512 8 H 0.112 0.888 9 C 0.005 3.995 10 N -0.196 5.196 11 O -0.033 6.033 12 C -0.083 4.083 13 C -0.043 4.043 14 C -0.154 4.154 15 C 0.008 3.992 16 O -0.410 6.410 17 N -0.289 5.289 18 H 0.097 0.903 19 H 0.143 0.857 20 H 0.136 0.864 21 H 0.069 0.931 22 H 0.076 0.924 23 H 0.093 0.907 24 H 0.087 0.913 25 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 1.230 -10.642 0.524 10.725 hybrid contribution 0.157 0.196 -0.051 0.256 sum 1.387 -10.446 0.472 10.549 Atomic orbital electron populations 1.69986 1.09193 1.30365 1.34680 1.27040 0.95917 1.05079 0.91606 0.84732 0.78938 0.74246 0.79075 1.17505 1.18541 1.18699 1.18908 0.94656 0.87405 1.50224 0.88841 1.22987 0.86677 0.93092 0.96793 1.75550 1.16489 0.92213 1.35327 1.85090 1.35575 1.13372 1.69287 1.29263 0.82038 0.99833 0.97198 1.20061 1.07045 0.78571 0.98605 1.21406 1.02343 0.96641 0.94988 1.22093 1.02123 0.91743 0.83220 1.86436 1.97744 1.29045 1.27819 1.72141 1.30787 1.00564 1.25407 0.90312 0.85705 0.86385 0.93125 0.92380 0.90707 0.91265 0.74920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -47.93 11.98 21.83 0.26 -47.66 15 2 C 0.02 1.15 5.49 85.28 0.47 1.61 15 3 Si 1.01 41.03 29.56 68.60 2.03 43.06 15 4 H -0.25 -9.75 7.11 99.48 0.71 -9.05 15 5 H -0.26 -9.97 7.11 99.48 0.71 -9.26 15 6 H -0.26 -10.09 7.11 99.48 0.71 -9.38 15 7 C -0.47 -28.43 9.52 23.56 0.22 -28.21 15 8 H 0.09 5.36 7.85 -2.91 -0.02 5.34 15 9 C 0.26 15.89 7.70 134.75 1.04 16.93 15 10 N -0.46 -28.91 10.49 -60.21 -0.63 -29.54 15 11 O 0.01 0.31 11.28 73.48 0.83 1.14 15 12 C 0.14 6.37 7.73 88.33 0.68 7.05 15 13 C 0.00 -0.11 5.84 29.85 0.17 0.06 15 14 C -0.11 -3.17 5.57 30.59 0.17 -3.00 15 15 C 0.09 1.58 7.05 71.98 0.51 2.09 15 16 O -0.60 -12.51 13.66 -148.98 -2.03 -14.55 15 17 N -0.55 -29.97 11.62 -304.63 -3.54 -33.51 15 18 H 0.29 15.09 8.29 -92.71 -0.77 14.32 15 19 H 0.12 2.67 8.14 -2.39 -0.02 2.65 15 20 H 0.12 2.86 8.14 -2.38 -0.02 2.84 15 21 H 0.05 1.65 8.14 -2.39 -0.02 1.63 15 22 H 0.06 1.78 8.14 -2.38 -0.02 1.76 15 23 H 0.07 1.01 8.14 -2.39 -0.02 0.99 15 24 H 0.07 1.01 8.14 -2.38 -0.02 0.99 15 25 H 0.40 3.84 9.12 -74.05 -0.68 3.16 15 Total: -1.00 -79.28 232.91 0.71 -78.56 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: 0.54 Total: 5.98 kcal Atomic # 6 Polarization: -6.74 SS G_CDS: 3.27 Total: -3.47 kcal Atomic # 7 Polarization: -106.81 SS G_CDS: -3.91 Total: -110.72 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -1.21 Total: -13.41 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 2.03 Total: 43.06 kcal Total: -79.28 0.71 -78.56 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260911463.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.879 kcal (2) G-P(sol) polarization free energy of solvation -79.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds