Wall clock time and date at job start Mon Mar 30 2020 01:51:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99495 * 2 1 4 4 H 1.48503 * 109.47000 * 239.99790 * 3 2 1 5 5 H 1.48506 * 109.47330 * 359.97438 * 3 2 1 6 6 H 1.48500 * 109.47185 * 119.99599 * 3 2 1 7 7 C 1.37873 * 120.00518 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00172 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99865 * 0.02562 * 7 2 1 10 10 N 1.46506 * 109.46928 * 179.97438 * 9 7 2 11 11 C 1.46317 * 119.91620 * 90.00162 * 10 9 7 12 12 C 1.52607 * 110.54467 * 142.47457 * 11 10 9 13 13 N 1.46315 * 110.53924 * 51.55813 * 12 11 10 14 14 C 1.34814 * 120.16736 * 322.47632 * 13 12 11 15 15 O 1.21340 * 120.46633 * 186.01952 * 14 13 12 16 16 C 1.34804 * 119.91599 * 269.72720 * 10 9 7 17 17 O 1.21344 * 120.46651 * 5.97467 * 16 10 9 18 18 H 0.96992 * 120.00316 * 0.02562 * 1 2 3 19 19 H 1.09004 * 109.47103 * 59.99689 * 9 7 2 20 20 H 1.09000 * 109.47247 * 299.99566 * 9 7 2 21 21 H 1.08997 * 109.26437 * 262.75538 * 11 10 9 22 22 H 1.09004 * 109.26106 * 22.24012 * 11 10 9 23 23 H 1.08997 * 109.26388 * 171.83036 * 12 11 10 24 24 H 1.09001 * 109.25909 * 291.32277 * 12 11 10 25 25 H 0.96996 * 119.92012 * 142.49797 * 13 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2839 2.7466 -0.0006 6 1 3.1027 1.6966 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2034 -3.6126 0.0005 11 6 2.6776 -4.1672 1.2687 12 6 2.8281 -5.6824 1.1677 13 7 3.6304 -6.0418 -0.0019 14 6 3.5051 -5.3453 -1.1494 15 8 4.0848 -5.7038 -2.1532 16 6 2.6361 -4.1271 -1.1679 17 8 2.3285 -3.6076 -2.2204 18 1 -0.4850 0.8400 -0.0004 19 1 0.6248 -2.5570 -0.8897 20 1 0.6243 -2.5567 0.8903 21 1 3.6430 -3.7256 1.5158 22 1 1.9616 -3.9292 2.0554 23 1 3.3167 -6.0561 2.0675 24 1 1.8411 -6.1367 1.0794 25 1 4.2538 -6.7832 0.0483 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000261025894.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:51:45 Heat of formation + Delta-G solvation = -63.447610 kcal Electronic energy + Delta-G solvation = -12606.933886 eV Core-core repulsion = 10199.741095 eV Total energy + Delta-G solvation = -2407.192791 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 198.079 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.38658 -37.68532 -36.61314 -33.98091 -32.44971 -29.29894 -27.73984 -24.50624 -23.41986 -21.93491 -18.28729 -17.48066 -17.24042 -16.58673 -15.65488 -15.14330 -14.42580 -14.33925 -13.67242 -13.61072 -13.06468 -12.23631 -12.19953 -11.84517 -11.28034 -10.95217 -10.85288 -10.62966 -10.21630 -9.77620 -9.22767 -8.92641 -8.50212 -7.92019 -6.12012 -4.17398 1.93800 3.09790 3.29332 3.34244 3.37063 3.51634 3.86380 4.39040 4.60864 4.80089 5.17783 5.22859 5.29024 5.68043 5.97772 6.48838 6.87603 7.03141 7.21395 7.33136 7.82120 7.92752 8.09226 8.14406 8.68386 8.87514 9.48129 10.96226 Molecular weight = 198.08amu Principal moments of inertia in cm(-1) A = 0.051704 B = 0.010182 C = 0.009562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 541.416652 B = 2749.360127 C = 2927.646282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.063 3.937 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.276 1.276 7 C -0.532 4.532 8 H 0.059 0.941 9 C 0.243 3.757 10 N -0.585 5.585 11 C 0.096 3.904 12 C 0.094 3.906 13 N -0.722 5.722 14 C 0.514 3.486 15 O -0.506 6.506 16 C 0.498 3.502 17 O -0.488 6.488 18 H 0.265 0.735 19 H 0.046 0.954 20 H 0.040 0.960 21 H 0.070 0.930 22 H 0.103 0.897 23 H 0.098 0.902 24 H 0.073 0.927 25 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.258 -9.989 7.364 13.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.139 4.139 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.202 1.202 7 C -0.571 4.571 8 H 0.077 0.923 9 C 0.125 3.875 10 N -0.321 5.321 11 C -0.028 4.028 12 C -0.031 4.031 13 N -0.380 5.380 14 C 0.295 3.705 15 O -0.378 6.378 16 C 0.278 3.722 17 O -0.360 6.360 18 H 0.075 0.925 19 H 0.064 0.936 20 H 0.058 0.942 21 H 0.088 0.912 22 H 0.121 0.879 23 H 0.117 0.883 24 H 0.091 0.909 25 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges 4.071 -9.571 6.201 12.108 hybrid contribution 0.714 0.632 0.263 0.990 sum 4.785 -8.938 6.464 12.023 Atomic orbital electron populations 1.69906 1.06011 1.27375 1.49973 1.24926 0.94909 0.99320 0.94783 0.86519 0.79516 0.82443 0.78743 1.20069 1.21094 1.20174 1.21357 0.93435 0.90490 1.51784 0.92326 1.19480 0.87036 0.82069 0.98935 1.48396 1.44953 1.35015 1.03715 1.21731 1.01790 0.91166 0.88148 1.21898 0.96442 0.96332 0.88430 1.46117 1.44177 1.35634 1.12113 1.20969 0.81978 0.84576 0.82950 1.90746 1.46024 1.68043 1.32995 1.19930 0.82337 0.84726 0.85225 1.90768 1.55036 1.59478 1.30674 0.92496 0.93598 0.94199 0.91223 0.87919 0.88330 0.90898 0.76153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.87 13.29 55.43 0.74 -25.13 15 2 C 0.06 1.77 5.46 -17.82 -0.10 1.67 15 3 Si 0.90 21.54 29.54 -169.99 -5.02 16.52 15 4 H -0.28 -6.70 7.11 56.52 0.40 -6.29 15 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 15 6 H -0.28 -6.38 7.11 56.52 0.40 -5.98 15 7 C -0.53 -14.72 9.39 -34.44 -0.32 -15.05 15 8 H 0.06 1.63 7.81 -52.48 -0.41 1.22 15 9 C 0.24 6.06 5.16 -5.19 -0.03 6.04 15 10 N -0.58 -11.91 2.79 -175.86 -0.49 -12.40 15 11 C 0.10 1.32 6.60 -4.34 -0.03 1.29 15 12 C 0.09 0.92 7.18 -4.34 -0.03 0.89 15 13 N -0.72 -9.03 5.64 -60.99 -0.34 -9.37 15 14 C 0.51 9.57 7.91 -11.48 -0.09 9.48 15 15 O -0.51 -10.99 17.84 -9.97 -0.18 -11.17 15 16 C 0.50 11.08 7.60 -11.48 -0.09 10.99 15 17 O -0.49 -13.21 16.67 -9.98 -0.17 -13.38 15 18 H 0.27 7.27 8.31 -40.82 -0.34 6.93 15 19 H 0.05 1.30 7.51 -51.93 -0.39 0.91 15 20 H 0.04 0.96 7.83 -51.93 -0.41 0.56 15 21 H 0.07 0.94 8.14 -51.93 -0.42 0.51 15 22 H 0.10 1.24 7.79 -51.93 -0.40 0.84 15 23 H 0.10 0.56 8.14 -51.93 -0.42 0.14 15 24 H 0.07 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.40 3.90 8.93 -40.82 -0.36 3.54 15 LS Contribution 228.99 15.07 3.45 3.45 Total: -1.00 -34.78 228.99 -5.08 -39.85 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: -2.38 Total: -3.68 kcal Atomic # 6 Polarization: 15.99 SS G_CDS: -0.69 Total: 15.31 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: -0.10 Total: -46.91 kcal Atomic # 8 Polarization: -24.20 SS G_CDS: -0.34 Total: -24.54 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 3.45 Total: 3.45 kcal Total: -34.78 -5.08 -39.85 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000261025894.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.594 kcal (2) G-P(sol) polarization free energy of solvation -34.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.854 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds